Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8067608.1

Orthogroup ID

OG0012169

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 573

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8067608.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 392 bp

atcaagagctttgccatggacatcttgaaacaaagctccaagatatgggtaactgagctcactgccaacctctccacattttgggacacgatagatgcagatgttgccaaggatggaaaggctagctatttgatcccactccagaagtccttcttcaatttcctcacaaaatgcttagttggagctgacgcttccaactcgcccaaaatagccgagtctggctacgctatgctcgaccgctggctcgccctccagctcctccccactgtgaagatcggtgtgcttcagcctctcgaggagattttcctccattcctttgcatacccatcttttcttgtgagtggagactacaaaaaggtttaccagtttatagaagaatatggtgagttaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0008150 GO:0008152 GO:0008202 GO:0009507 GO:0009526 GO:0009536 GO:0009611 GO:0009941 GO:0009987 GO:0016125 GO:0016491 GO:0019752 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00592 ko01110 map00592 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

130

Amino Acids

14.65

Weight (kDa)

5.06

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15440
fragaria_vesca	FvH4_6g42740
malus_domestica	MD09G1071400.v1.1 MD17G1100800.v1.1
prunus_persica	Prupe.3G213800_v2.0.a1
pyrus_communis	pycom09g03470 pycom17g09550
rosa_chinensis	RchiOBHm_Chr2g0158631
rosa_laevigata	RLG00000021101
rosa_multiflora	Rmu_co8067608.1_g000001 Rmu_sc0004188.1_g000015 Rmu_sc0034116.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091160
rosa_rugosa	Rorug02G0471000
rosa_samantha	Rh2AG536700 Rh2BG549900 Rh2CG520400 Rh2DG559500
rosa_wichuraiana	Rw2G044430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	45, 81
AciI	CCGC	1 cut(s)	238
AclWI	GGATC	1 cut(s)	127
AcuI	CTGAAG	1 cut(s)	269
AfiI	CCNNNNNNNGG	2 cut(s)	45, 81
AgsI	TTSAA	2 cut(s)	28, 157
AluBI	AGCT	6 cut(s)	9, 36, 58, 126, 185, 256
AluI	AGCT	6 cut(s)	9, 36, 58, 126, 185, 256
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	1 cut(s)	339
AlwI	GGATC	1 cut(s)	127
Ama87I	CYCGRG	1 cut(s)	293
Asp700I	GAANNNNTTC	1 cut(s)	149
AsuNHI	GCTAGC	1 cut(s)	122
AvaI	CYCGRG	1 cut(s)	293
BanII	GRGCYC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	60
BccI	CCATC	2 cut(s)	107, 334
BcoDI	GTCTC	1 cut(s)	339
BfaI	CTAG	1 cut(s)	123
BmeT110I	CYCGRG	1 cut(s)	293
BmsI	GCATC	1 cut(s)	85
BmtI	GCTAGC	1 cut(s)	126
BpmI	CTGGAG	2 cut(s)	125, 236
BsaJI	CCNNGG	2 cut(s)	15, 108
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 81
Bse1I	ACTGG	1 cut(s)	364
BseDI	CCNNGG	2 cut(s)	15, 108
BseGI	GGATG	1 cut(s)	118
BseLI	CCNNNNNNNGG	2 cut(s)	45, 81
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	364
BseRI	GAGGAG	2 cut(s)	248, 311
Bsh1285I	CGRYCG	1 cut(s)	238
BsiEI	CGRYCG	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	60
BsiHKCI	CYCGRG	1 cut(s)	293
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	2 cut(s)	45, 81
BsmAI	GTCTC	1 cut(s)	339
BsmFI	GGGAC	1 cut(s)	98
BsoBI	CYCGRG	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp143I	GATC	2 cut(s)	132, 273
Bsp19I	CCATGG	1 cut(s)	15
BspACI	CCGC	1 cut(s)	238
BspCNI	CTCAG	1 cut(s)	46
BspOI	GCTAGC	1 cut(s)	126
BspPI	GGATC	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	364
BssECI	CCNNGG	2 cut(s)	15, 108
BssMI	GATC	2 cut(s)	132, 273
BssT1I	CCWWGG	2 cut(s)	15, 108
Bst4CI	ACNGT	1 cut(s)	268
BstAPI	GCANNNNNTGC	1 cut(s)	104
BstC8I	GCNNGC	3 cut(s)	124, 242, 246
BstDEI	CTNAG	2 cut(s)	54, 175
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	1 cut(s)	118
BstKTI	GATC	2 cut(s)	135, 276
BstMAI	GTCTC	1 cut(s)	339
BstMBI	GATC	2 cut(s)	132, 273
BstMCI	CGRYCG	1 cut(s)	238
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BtgI	CCRYGG	1 cut(s)	15
BtsCI	GGATG	1 cut(s)	118
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	2 cut(s)	60, 264
Cac8I	GCNNGC	3 cut(s)	124, 242, 246
CseI	GACGC	1 cut(s)	197
CviAII	CATG	1 cut(s)	16
DdeI	CTNAG	2 cut(s)	54, 175
DpnI	GATC	2 cut(s)	134, 275
DpnII	GATC	2 cut(s)	132, 273
Ecl136II	GAGCTC	1 cut(s)	58
Eco130I	CCWWGG	2 cut(s)	15, 108
Eco24I	GRGCYC	1 cut(s)	60
Eco53kI	GAGCTC	1 cut(s)	58
Eco57I	CTGAAG	1 cut(s)	269
Eco88I	CYCGRG	1 cut(s)	293
EcoICRI	GAGCTC	1 cut(s)	58
EcoT14I	CCWWGG	2 cut(s)	15, 108
EcoT38I	GRGCYC	1 cut(s)	60
ErhI	CCWWGG	2 cut(s)	15, 108
FaeI	CATG	1 cut(s)	19
FaiI	YATR	6 cut(s)	17, 46, 230, 322, 371, 381
FalI	AAGNNNNNCTT	2 cut(s)	137, 169
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	1 cut(s)	15
FokI	GGATG	1 cut(s)	125
FriOI	GRGCYC	1 cut(s)	60
FspBI	CTAG	1 cut(s)	123
GsuI	CTGGAG	2 cut(s)	125, 236
HgaI	GACGC	1 cut(s)	197
Hin1II	CATG	1 cut(s)	19
HinfI	GANTC	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188III	TCNNGA	4 cut(s)	4, 25, 142, 293
Hpy8I	GTNNAC	1 cut(s)	361
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4V	TGCA	2 cut(s)	98, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	2 cut(s)	54, 175
Hsp92II	CATG	1 cut(s)	19
Kzo9I	GATC	2 cut(s)	132, 273
LmnI	GCTCC	3 cut(s)	41, 182, 261
LpnPI	CCDG	5 cut(s)	155, 204, 226, 266, 377
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	2 cut(s)	134, 275
MboI	GATC	2 cut(s)	132, 273
MboII	GAAGA	3 cut(s)	145, 283, 386
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	1 cut(s)	157
MlyI	GAGTC	1 cut(s)	224
MmeI	TCCRAC	2 cut(s)	160, 219
MnlI	CCTC	7 cut(s)	80, 173, 260, 269, 289, 300, 317
MroXI	GAANNNNTTC	1 cut(s)	149
MseI	TTAA	1 cut(s)	389
MspA1I	CMGCKG	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	104
NcoI	CCATGG	1 cut(s)	15
NdeII	GATC	2 cut(s)	132, 273
NheI	GCTAGC	1 cut(s)	122
NlaIII	CATG	1 cut(s)	19
NmeAIII	GCCGAG	1 cut(s)	238
PaeR7I	CTCGAG	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PdmI	GAANNNNTTC	1 cut(s)	149
PflMI	CCANNNNNTGG	2 cut(s)	45, 81
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
Psp124BI	GAGCTC	1 cut(s)	60
SacI	GAGCTC	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	389
Sau3AI	GATC	2 cut(s)	132, 273
SchI	GAGTC	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	8 cut(s)	11, 38, 60, 72, 128, 187, 258, 360
SfaNI	GCATC	1 cut(s)	85
Sfr274I	CTCGAG	1 cut(s)	293
SlaI	CTCGAG	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	1 cut(s)	157
SsiI	CCGC	1 cut(s)	238
SspMI	CTAG	1 cut(s)	123
SstI	GAGCTC	1 cut(s)	60
StyI	CCWWGG	2 cut(s)	15, 108
TaaI	ACNGT	1 cut(s)	268
TaqI	TCGA	2 cut(s)	234, 294
TasI	AATT	1 cut(s)	157
Tru1I	TTAA	1 cut(s)	389
Tru9I	TTAA	1 cut(s)	389
TscAI	CASTG	2 cut(s)	67, 271
TspRI	CASTG	2 cut(s)	67, 271
Van91I	CCANNNNNTGG	2 cut(s)	45, 81
XhoI	CTCGAG	1 cut(s)	293
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.