Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034116.1

Orthogroup ID

OG0012169

Physical Location & Seq

Genomic Coordinates Forward (+)

606 .. 1073

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034116.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgtctgctttcatgatgagcatcactccaggtataccctcttcttcttcaccatcacacgtagtgacttcttcaccaccgccgacgtcacttcccgtccgtacgatcccgggggcgtacggccttccgttgctgggccccatctccgaccggctggactacttctggttccagggaccggagacgttcttcaagaaaagaacggagaagtacaagagtacggtgttccggaccaatgtccctccgagtttcccggtgttcttgggtgttaaccccaacgttgtggccgtgctggactgcaagtcgttctcgtatctcttcgacatggacgtcgtcgagaagaagaactgtctggtcggcgacttcatgcccagtgttaagttcaccggtgacctcaggacctgtgcttaccttgatacttctgaacctcaacacgcccaggtgcgtacatggatttctctaccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0008150 GO:0008152 GO:0008202 GO:0009507 GO:0009526 GO:0009536 GO:0009611 GO:0009941 GO:0009987 GO:0016125 GO:0016491 GO:0019752 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00592 ko01110 map00592 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

155

Amino Acids

17.2

Weight (kDa)

8.46

Isoelectric Point (pI)

49.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15440
fragaria_vesca	FvH4_6g42740
malus_domestica	MD09G1071400.v1.1 MD17G1100800.v1.1
prunus_persica	Prupe.3G213800_v2.0.a1
pyrus_communis	pycom09g03470 pycom17g09550
rosa_chinensis	RchiOBHm_Chr2g0158631
rosa_laevigata	RLG00000021101
rosa_multiflora	Rmu_co8067608.1_g000001 Rmu_sc0004188.1_g000015 Rmu_sc0034116.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091160
rosa_rugosa	Rorug02G0471000
rosa_samantha	Rh2AG536700 Rh2BG549900 Rh2CG520400 Rh2DG559500
rosa_wichuraiana	Rw2G044430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	329
AatII	GACGTC	2 cut(s)	89, 333
AccI	GTMKAC	1 cut(s)	34
AccIII	TCCGGA	1 cut(s)	228
AciI	CCGC	1 cut(s)	80
AclI	AACGTT	1 cut(s)	279
AclWI	GGATC	1 cut(s)	100
AcoI	YGGCCR	1 cut(s)	285
AcyI	GRCGYC	2 cut(s)	86, 330
AdeI	CACNNNGTG	1 cut(s)	64
AfaI	GTAC	5 cut(s)	103, 119, 212, 220, 448
AfiI	CCNNNNNNNGG	2 cut(s)	134, 178
AflIII	ACRYGT	1 cut(s)	58
AgeI	ACCGGT	1 cut(s)	386
AgsI	TTSAA	1 cut(s)	193
AhdI	GACNNNNNGTC	1 cut(s)	301
AjnI	CCWGG	3 cut(s)	28, 171, 438
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	1 cut(s)	100
AlwNI	CAGNNNCTG	1 cut(s)	402
Ama87I	CYCGRG	1 cut(s)	109
Aor13HI	TCCGGA	1 cut(s)	228
AoxI	GGCC	3 cut(s)	121, 136, 285
ApaI	GGGCCC	1 cut(s)	140
AsiGI	ACCGGT	1 cut(s)	386
AspS9I	GGNCC	5 cut(s)	136, 137, 176, 231, 399
AsuC2I	CCSGG	3 cut(s)	110, 111, 254
AsuHPI	GGTGA	4 cut(s)	42, 66, 376, 401
AvaI	CYCGRG	1 cut(s)	109
AvaII	GGWCC	3 cut(s)	176, 231, 399
AxyI	CCTNAGG	1 cut(s)	395
BaeGI	GKGCMC	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	140
BarI	GAAGNNNNNNTAC	2 cut(s)	25, 57
BccI	CCATC	2 cut(s)	61, 149
BceAI	ACGGC	2 cut(s)	136, 272
BciT130I	CCWGG	3 cut(s)	30, 173, 440
BcnI	CCSGG	3 cut(s)	110, 111, 254
BcoDI	GTCTC	1 cut(s)	176
Bme1390I	CCNGG	6 cut(s)	30, 110, 111, 173, 254, 440
Bme18I	GGWCC	3 cut(s)	176, 231, 399
BmeRI	GACNNNNNGTC	1 cut(s)	301
BmeT110I	CYCGRG	1 cut(s)	109
BmgT120I	GGNCC	5 cut(s)	136, 137, 176, 231, 399
BmiI	GGNNCC	4 cut(s)	138, 139, 170, 177
BmrFI	CCNGG	6 cut(s)	30, 110, 111, 173, 254, 440
BmrI	ACTGGG	1 cut(s)	366
BmsI	GCATC	1 cut(s)	30
BmuI	ACTGGG	1 cut(s)	366
BoxI	GACNNNNGTC	1 cut(s)	236
BplI	GAGNNNNNCTC	2 cut(s)	10, 42
BpmI	CTGGAG	1 cut(s)	12
BpuMI	CCSGG	3 cut(s)	110, 111, 254
BsaAI	YACGTR	1 cut(s)	61
BsaBI	GATNNNNATC	1 cut(s)	20
BsaHI	GRCGYC	2 cut(s)	86, 330
BsaJI	CCNNGG	4 cut(s)	109, 110, 172, 438
BsaWI	WCCGGW	3 cut(s)	178, 228, 386
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 178
Bse118I	RCCGGY	2 cut(s)	150, 386
Bse1I	ACTGG	1 cut(s)	372
Bse21I	CCTNAGG	1 cut(s)	395
Bse8I	GATNNNNATC	1 cut(s)	20
BseAI	TCCGGA	1 cut(s)	228
BseBI	CCWGG	3 cut(s)	30, 173, 440
BseDI	CCNNGG	4 cut(s)	109, 110, 172, 438
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	2 cut(s)	134, 178
BseMII	CTCAG	1 cut(s)	409
BseNI	ACTGG	1 cut(s)	372
BseSI	GKGCMC	1 cut(s)	140
BseYI	CCCAGC	1 cut(s)	133
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	3 cut(s)	123, 138, 287
BshTI	ACCGGT	1 cut(s)	386
BsiEI	CGRYCG	1 cut(s)	151
BsiHKCI	CYCGRG	1 cut(s)	109
BsiSI	CCGG	6 cut(s)	110, 151, 179, 229, 254, 387
BsiWI	CGTACG	2 cut(s)	101, 117
BslFI	GGGAC	2 cut(s)	189, 224
BslI	CCNNNNNNNGG	2 cut(s)	134, 178
BsmAI	GTCTC	1 cut(s)	176
BsmBI	CGTCTC	1 cut(s)	176
BsmFI	GGGAC	2 cut(s)	189, 224
BsnI	GGCC	3 cut(s)	123, 138, 287
BsoBI	CYCGRG	1 cut(s)	109
Bsp120I	GGGCCC	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp13I	TCCGGA	1 cut(s)	228
Bsp143I	GATC	1 cut(s)	105
BspACI	CCGC	1 cut(s)	80
BspANI	GGCC	3 cut(s)	123, 138, 287
BspCNI	CTCAG	1 cut(s)	408
BspEI	TCCGGA	1 cut(s)	228
BspHI	TCATGA	1 cut(s)	12
BspLI	GGNNCC	4 cut(s)	138, 139, 170, 177
BspPI	GGATC	1 cut(s)	100
BsrFI	RCCGGY	2 cut(s)	150, 386
BsrI	ACTGG	1 cut(s)	372
BssAI	RCCGGY	2 cut(s)	150, 386
BssECI	CCNNGG	4 cut(s)	109, 110, 172, 438
BssMI	GATC	1 cut(s)	105
BssNAI	GTATAC	1 cut(s)	35
BssNI	GRCGYC	2 cut(s)	86, 330
Bst1107I	GTATAC	1 cut(s)	35
Bst2UI	CCWGG	3 cut(s)	30, 173, 440
Bst4CI	ACNGT	2 cut(s)	223, 350
Bst6I	CTCTTC	2 cut(s)	46, 323
BstACI	GRCGYC	2 cut(s)	86, 330
BstBAI	YACGTR	1 cut(s)	61
BstDEI	CTNAG	1 cut(s)	395
BstEII	GGTNACC	1 cut(s)	389
BstKTI	GATC	1 cut(s)	108
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	1 cut(s)	105
BstMCI	CGRYCG	1 cut(s)	151
BstNI	CCWGG	3 cut(s)	30, 173, 440
BstPAI	GACNNNNGTC	1 cut(s)	236
BstPI	GGTNACC	1 cut(s)	389
BstSCI	CCNGG	6 cut(s)	28, 108, 109, 171, 252, 438
BstSLI	GKGCMC	1 cut(s)	140
BstXI	CCANNNNNNTGG	1 cut(s)	283
BstZ17I	GTATAC	1 cut(s)	35
Bsu36I	CCTNAGG	1 cut(s)	395
BsuRI	GGCC	3 cut(s)	123, 138, 287
BtsIMutI	CAGTG	1 cut(s)	379
CaiI	CAGNNNCTG	1 cut(s)	402
CciI	TCATGA	1 cut(s)	12
Cfr10I	RCCGGY	2 cut(s)	150, 386
Cfr13I	GGNCC	5 cut(s)	136, 137, 176, 231, 399
Cfr9I	CCCGGG	1 cut(s)	109
Csp6I	GTAC	5 cut(s)	102, 118, 211, 219, 447
CspAI	ACCGGT	1 cut(s)	386
CviAII	CATG	4 cut(s)	13, 325, 367, 450
CviJI	RGCY	4 cut(s)	123, 138, 154, 287
CviKI_1	RGCY	4 cut(s)	123, 138, 154, 287
CviQI	GTAC	5 cut(s)	102, 118, 211, 219, 447
DdeI	CTNAG	1 cut(s)	395
DpnI	GATC	1 cut(s)	107
DpnII	GATC	1 cut(s)	105
DraIII	CACNNNGTG	1 cut(s)	64
DrdI	GACNNNNNNGTC	1 cut(s)	329
DriI	GACNNNNNGTC	1 cut(s)	301
DseDI	GACNNNNNNGTC	1 cut(s)	329
EaeI	YGGCCR	1 cut(s)	285
Eam1104I	CTCTTC	2 cut(s)	46, 323
Eam1105I	GACNNNNNGTC	1 cut(s)	301
EarI	CTCTTC	2 cut(s)	46, 323
Eco24I	GRGCYC	1 cut(s)	140
Eco47I	GGWCC	3 cut(s)	176, 231, 399
Eco81I	CCTNAGG	1 cut(s)	395
Eco88I	CYCGRG	1 cut(s)	109
Eco91I	GGTNACC	1 cut(s)	389
EcoO109I	RGGNCCY	2 cut(s)	137, 399
EcoO65I	GGTNACC	1 cut(s)	389
EcoRII	CCWGG	3 cut(s)	28, 171, 438
EcoT38I	GRGCYC	1 cut(s)	140
Esp3I	CGTCTC	1 cut(s)	176
FaeI	CATG	4 cut(s)	16, 328, 370, 453
FaiI	YATR	5 cut(s)	14, 35, 326, 368, 451
FaqI	GGGAC	2 cut(s)	189, 224
FatI	CATG	4 cut(s)	12, 324, 366, 449
FblI	GTMKAC	1 cut(s)	34
FriOI	GRGCYC	1 cut(s)	140
GsaI	CCCAGC	1 cut(s)	137
GsuI	CTGGAG	1 cut(s)	12
HaeIII	GGCC	3 cut(s)	123, 138, 287
HapII	CCGG	6 cut(s)	110, 151, 179, 229, 254, 387
Hin1I	GRCGYC	2 cut(s)	86, 330
Hin1II	CATG	4 cut(s)	16, 328, 370, 453
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HpaI	GTTAAC	1 cut(s)	271
HpaII	CCGG	6 cut(s)	110, 151, 179, 229, 254, 387
HphI	GGTGA	4 cut(s)	42, 66, 376, 401
Hpy166II	GTNNAC	3 cut(s)	35, 271, 384
Hpy188I	TCNGA	3 cut(s)	148, 246, 424
Hpy188III	TCNNGA	5 cut(s)	13, 193, 229, 337, 397
Hpy8I	GTNNAC	3 cut(s)	35, 271, 384
Hpy99I	CGWCG	3 cut(s)	88, 335, 338
HpyAV	CCTTC	1 cut(s)	134
HpyCH4III	ACNGT	2 cut(s)	223, 350
HpyCH4IV	ACGT	5 cut(s)	60, 86, 185, 279, 330
HpyCH4V	TGCA	1 cut(s)	300
HpyF3I	CTNAG	1 cut(s)	395
HpySE526I	ACGT	5 cut(s)	60, 86, 185, 279, 330
Hsp92I	GRCGYC	2 cut(s)	86, 330
Hsp92II	CATG	4 cut(s)	16, 328, 370, 453
Kpn2I	TCCGGA	1 cut(s)	228
KspAI	GTTAAC	1 cut(s)	271
Kzo9I	GATC	1 cut(s)	105
LweI	GCATC	1 cut(s)	30
MaeII	ACGT	5 cut(s)	60, 86, 185, 279, 330
MaeIII	GTNAC	3 cut(s)	64, 87, 389
MalI	GATC	1 cut(s)	107
MboI	GATC	1 cut(s)	105
MboII	GAAGA	8 cut(s)	33, 36, 39, 63, 181, 310, 352, 355
MhlI	GDGCHC	1 cut(s)	140
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	4 cut(s)	49, 252, 404, 438
MroI	TCCGGA	1 cut(s)	228
MseI	TTAA	3 cut(s)	270, 378, 466
MspI	CCGG	6 cut(s)	110, 151, 179, 229, 254, 387
MspR9I	CCNGG	6 cut(s)	30, 110, 111, 173, 254, 440
MvaI	CCWGG	3 cut(s)	30, 173, 440
NciI	CCSGG	3 cut(s)	110, 111, 254
NdeII	GATC	1 cut(s)	105
NlaIII	CATG	4 cut(s)	16, 328, 370, 453
NlaIV	GGNNCC	4 cut(s)	138, 139, 170, 177
NmuCI	GTSAC	3 cut(s)	64, 87, 389
PagI	TCATGA	1 cut(s)	12
PcsI	WCGNNNNNNNCGW	2 cut(s)	285, 327
Pfl23II	CGTACG	2 cut(s)	101, 117
PflFI	GACNNNGTC	1 cut(s)	332
PinAI	ACCGGT	1 cut(s)	386
Ppu21I	YACGTR	1 cut(s)	61
PpuMI	RGGWCCY	1 cut(s)	399
PshAI	GACNNNNGTC	1 cut(s)	236
Psp1406I	AACGTT	1 cut(s)	279
Psp5II	RGGWCCY	1 cut(s)	399
Psp6I	CCWGG	3 cut(s)	28, 171, 438
PspEI	GGTNACC	1 cut(s)	389
PspFI	CCCAGC	1 cut(s)	133
PspGI	CCWGG	3 cut(s)	28, 171, 438
PspLI	CGTACG	2 cut(s)	101, 117
PspN4I	GGNNCC	4 cut(s)	138, 139, 170, 177
PspOMI	GGGCCC	1 cut(s)	136
PspPI	GGNCC	5 cut(s)	136, 137, 176, 231, 399
PspPPI	RGGWCCY	1 cut(s)	399
PstNI	CAGNNNCTG	1 cut(s)	402
PsyI	GACNNNGTC	1 cut(s)	332
RsaI	GTAC	5 cut(s)	103, 119, 212, 220, 448
RsaNI	GTAC	5 cut(s)	102, 118, 211, 219, 447
SaqAI	TTAA	3 cut(s)	270, 378, 466
Sau3AI	GATC	1 cut(s)	105
Sau96I	GGNCC	5 cut(s)	136, 137, 176, 231, 399
ScrFI	CCNGG	6 cut(s)	30, 110, 111, 173, 254, 440
SduI	GDGCHC	1 cut(s)	140
SfaNI	GCATC	1 cut(s)	30
SgrAI	CRCCGGYG	1 cut(s)	386
SinI	GGWCC	3 cut(s)	176, 231, 399
SmaI	CCCGGG	1 cut(s)	111
SsiI	CCGC	1 cut(s)	80
StyD4I	CCNGG	6 cut(s)	28, 108, 109, 171, 252, 438
TaaI	ACNGT	2 cut(s)	223, 350
TaiI	ACGT	5 cut(s)	63, 89, 188, 282, 333
TaqI	TCGA	2 cut(s)	321, 336
TatI	WGTACW	1 cut(s)	210
Tru1I	TTAA	3 cut(s)	270, 378, 466
Tru9I	TTAA	3 cut(s)	270, 378, 466
TscAI	CASTG	1 cut(s)	379
TseFI	GTSAC	3 cut(s)	64, 87, 389
Tsp45I	GTSAC	3 cut(s)	64, 87, 389
TspDTI	ATGAA	1 cut(s)	355
TspGWI	ACGGA	3 cut(s)	89, 117, 218
TspMI	CCCGGG	1 cut(s)	109
TspRI	CASTG	1 cut(s)	379
Tth111I	GACNNNGTC	1 cut(s)	332
VpaK11BI	GGWCC	3 cut(s)	176, 231, 399
XmaI	CCCGGG	1 cut(s)	109
XmiI	GTMKAC	1 cut(s)	34
ZraI	GACGTC	2 cut(s)	87, 331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.