AT4G15830

non-motile cilium assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014024
Physical Location & Seq
Reverse (-)
8995113 .. 8996613
1501 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G15830.1

Sequence Viewer

Length: 891 bp
ATGGCGTTGAGGAACATTGAAAACGCTCTTCCGATCTCACAGGAACGACCTAAGAAGCTGGCCAAACTCTCAAAGCAACCGGAGATTGGTCTAAATGACGAAAACAACCCTGTCGCTGTGGCTGAATCGACCGTCGAATACGTTGCTTCTGAGAATCTCAAACCATTTTCAGATCCTGAATCTTCTGTCCAGAGATTACTTGAAGAATTAGCATCAAAGGATTGGATTAAAGTATGTGACTCATTGAACAACACAAGGAGATTTGCAATTCATCACTCTTCTCTGTTGCTACCAATTCTAGAAAAGCTTATAGTTGTGATGGTGAAGGCGATGAAGAATCCTAGAAGTGCATTGTGCAAGACTTCGATTATGACTTGTTCTGATATCTTCACTGCTTATGGAGAAAAGTTGCTGGAAGGACCTCATTTGAAATCTATGGACGATCTGCTGTTGCAGTTGCTGATGAAAGCTTCACAAGACAAGAAGTTTGTGTGTGAAGAAGCAGAGAAAGCGCTGAACACGATGGTTAACTCGGTGGCTCGCTTGCCGCTTCTGCGTAAGCTTCAGAGTTATGTCCGTCACAGTAACCCTCGTGTCAGGGCCAAAGCTGCTGTGTCTACTTCCAACTGCGTTTCTAAAATGGAGGTAAATGAAATGGAAGAATTTGGGATGATTCTGCTCGCACAAATGGCTGCGGATCAGTTGAGTGACAAGTTGCCAGAGGCAAGGGAAGCTGCAAGGAGTATGGTGAACTCGCTTTTCGAGAAATTTACATGGAATGAAGAAGAAGACGAAGAAGGAAGCAAGCAAGAAGCTTGGAAGAAGTTTTGTGAGAAGAATGTAACAGGGCTTAATGCACAAGCCATGATCAAGATCGTTGCATCTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLASP_N

Protein Analysis

296

Amino Acids

33.27

Weight (kDa)

6.49

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLASP_N PF12348 97 - 267 1e-08 CLASP N terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014024)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15830
fragaria_vesca FvH4_4g18210
malus_domestica MD13G1168000.v1.1 MD16G1168400.v1.1
prunus_persica Prupe.1G135600_v2.0.a1
pyrus_communis pycom13g14380 pycom16g14180
rosa_chinensis RchiOBHm_Chr4g0422361
rosa_laevigata RLG00000007616
rosa_multiflora Rmu_co8367675.1_g000001 Rmu_sc0013245.1_g000010
rosa_roxburghii Rroxscaffold_5G00364480
rosa_rugosa Rorug04G0179400
rosa_samantha Rh4AG238800 Rh4BG242400 Rh4CG253900
rosa_wichuraiana Rw4G020650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 617
AciI CCGC 2 cut(s) 548, 695
AclWI GGATC 2 cut(s) 167, 705
AcoI YGGCCR 1 cut(s) 60
AcsI RAATTY 2 cut(s) 662, 767
AcuI CTGAAG 1 cut(s) 548
AfeI AGCGCT 1 cut(s) 513
AfiI CCNNNNNNNGG 1 cut(s) 86
AgsI TTSAA 4 cut(s) 20, 203, 247, 430
AluBI AGCT 7 cut(s) 58, 307, 470, 562, 608, 734, 815
AluI AGCT 7 cut(s) 58, 307, 470, 562, 608, 734, 815
AlwI GGATC 2 cut(s) 167, 705
AlwNI CAGNNNCTG 2 cut(s) 176, 460
Aor51HI AGCGCT 1 cut(s) 513
AoxI GGCC 2 cut(s) 60, 600
ApeKI GCWGC 3 cut(s) 608, 692, 734
ApoI RAATTY 2 cut(s) 662, 767
ArsI GACNNNNNNTTYG 2 cut(s) 470, 502
AspLEI GCGC 1 cut(s) 514
AspS9I GGNCC 2 cut(s) 419, 600
AsuHPI GGTGA 2 cut(s) 334, 760
AvaII GGWCC 1 cut(s) 419
BalI TGGCCA 1 cut(s) 62
BauI CACGAG 1 cut(s) 591
BbsI GAAGAC 1 cut(s) 795
BbvI GCAGC 3 cut(s) 595, 679, 721
BccI CCATC 2 cut(s) 313, 517
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BclI TGATCA 1 cut(s) 867
BfaI CTAG 2 cut(s) 299, 342
BfoI RGCGCY 1 cut(s) 515
BisI GCNGC 4 cut(s) 548, 609, 693, 735
BlsI GCNGC 4 cut(s) 549, 610, 694, 736
Bme18I GGWCC 1 cut(s) 419
BmgT120I GGNCC 2 cut(s) 419, 600
BmsI GCATC 1 cut(s) 221
BpiI GAAGAC 1 cut(s) 795
BsaBI GATNNNNATC 1 cut(s) 872
BsaWI WCCGGW 1 cut(s) 79
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse8I GATNNNNATC 1 cut(s) 872
BseGI GGATG 1 cut(s) 675
BseJI GATNNNNATC 1 cut(s) 872
BseLI CCNNNNNNNGG 1 cut(s) 86
BseMII CTCAG 1 cut(s) 141
BseXI GCAGC 3 cut(s) 595, 679, 721
Bsh1285I CGRYCG 1 cut(s) 132
BshFI GGCC 2 cut(s) 62, 602
BsiEI CGRYCG 1 cut(s) 132
BsiSI CCGG 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 86
BsnI GGCC 2 cut(s) 62, 602
Bsp143I GATC 6 cut(s) 33, 172, 442, 697, 867, 873
BspACI CCGC 2 cut(s) 548, 695
BspANI GGCC 2 cut(s) 62, 602
BspCNI CTCAG 1 cut(s) 142
BspPI GGATC 2 cut(s) 167, 705
BspQI GCTCTTC 1 cut(s) 33
BssMI GATC 6 cut(s) 33, 172, 442, 697, 867, 873
BssSI CACGAG 1 cut(s) 591
Bst2BI CACGAG 1 cut(s) 591
Bst4CI ACNGT 2 cut(s) 133, 584
Bst6I CTCTTC 2 cut(s) 33, 283
BstC8I GCNNGC 5 cut(s) 60, 541, 545, 681, 806
BstDEI CTNAG 2 cut(s) 51, 150
BstF5I GGATG 1 cut(s) 675
BstH2I RGCGCY 1 cut(s) 515
BstHHI GCGC 1 cut(s) 514
BstKTI GATC 6 cut(s) 36, 175, 445, 700, 870, 876
BstMBI GATC 6 cut(s) 33, 172, 442, 697, 867, 873
BstMCI CGRYCG 1 cut(s) 132
BstMWI GCNNNNNNNGC 5 cut(s) 509, 553, 608, 689, 731
BstV1I GCAGC 3 cut(s) 595, 679, 721
BstV2I GAAGAC 1 cut(s) 795
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BsuRI GGCC 2 cut(s) 62, 602
BtgZI GCGATG 1 cut(s) 344
BtsCI GGATG 1 cut(s) 675
BtsI GCAGTG 1 cut(s) 390
BtsIMutI CAGTG 1 cut(s) 390
Cac8I GCNNGC 5 cut(s) 60, 541, 545, 681, 806
CaiI CAGNNNCTG 2 cut(s) 176, 460
CfoI GCGC 1 cut(s) 514
Cfr13I GGNCC 2 cut(s) 419, 600
CviAII CATG 2 cut(s) 774, 865
DdeI CTNAG 2 cut(s) 51, 150
DpnI GATC 6 cut(s) 35, 174, 444, 699, 869, 875
DpnII GATC 6 cut(s) 33, 172, 442, 697, 867, 873
EaeI YGGCCR 1 cut(s) 60
Eam1104I CTCTTC 2 cut(s) 33, 283
EarI CTCTTC 2 cut(s) 33, 283
Eco32I GATATC 1 cut(s) 385
Eco47I GGWCC 1 cut(s) 419
Eco47III AGCGCT 1 cut(s) 513
Eco57I CTGAAG 1 cut(s) 548
EcoO109I RGGNCCY 1 cut(s) 419
EcoRV GATATC 1 cut(s) 385
FaeI CATG 2 cut(s) 777, 868
FaiI YATR 9 cut(s) 235, 311, 371, 399, 437, 573, 746, 775, 866
FatI CATG 2 cut(s) 773, 864
FbaI TGATCA 1 cut(s) 867
FblI GTMKAC 1 cut(s) 617
Fnu4HI GCNGC 4 cut(s) 548, 609, 693, 735
FokI GGATG 1 cut(s) 682
Fsp4HI GCNGC 4 cut(s) 548, 609, 693, 735
FspBI CTAG 2 cut(s) 299, 342
GlaI GCGC 1 cut(s) 513
GluI GCNGC 4 cut(s) 548, 609, 693, 735
HaeII RGCGCY 1 cut(s) 515
HaeIII GGCC 2 cut(s) 62, 602
HapII CCGG 1 cut(s) 80
HhaI GCGC 1 cut(s) 514
Hin1II CATG 2 cut(s) 777, 868
Hin6I GCGC 1 cut(s) 512
HinP1I GCGC 1 cut(s) 512
HincII GTYRAC 1 cut(s) 529
HindII GTYRAC 1 cut(s) 529
HindIII AAGCTT 4 cut(s) 305, 468, 560, 813
HinfI GANTC 6 cut(s) 125, 154, 179, 239, 337, 673
HpaI GTTAAC 1 cut(s) 529
HpaII CCGG 1 cut(s) 80
HphI GGTGA 2 cut(s) 334, 760
Hpy166II GTNNAC 3 cut(s) 529, 618, 751
Hpy188I TCNGA 5 cut(s) 33, 151, 172, 382, 567
Hpy188III TCNNGA 5 cut(s) 176, 190, 299, 763, 871
Hpy8I GTNNAC 3 cut(s) 529, 618, 751
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 3 cut(s) 319, 410, 791
HpyCH4III ACNGT 2 cut(s) 133, 584
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 7 cut(s) 266, 350, 357, 454, 737, 857, 881
HpyF10VI GCNNNNNNNGC 5 cut(s) 509, 553, 608, 689, 731
HpyF3I CTNAG 2 cut(s) 51, 150
HpySE526I ACGT 1 cut(s) 141
Hsp92II CATG 2 cut(s) 777, 868
HspAI GCGC 1 cut(s) 512
Ksp22I TGATCA 1 cut(s) 867
KspAI GTTAAC 1 cut(s) 529
Kzo9I GATC 6 cut(s) 33, 172, 442, 697, 867, 873
LguI GCTCTTC 1 cut(s) 33
Lsp1109I GCAGC 3 cut(s) 595, 679, 721
LweI GCATC 1 cut(s) 221
MaeI CTAG 2 cut(s) 299, 342
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 5 cut(s) 236, 578, 584, 707, 841
MalI GATC 6 cut(s) 35, 174, 444, 699, 869, 875
MboI GATC 6 cut(s) 33, 172, 442, 697, 867, 873
MflI RGATCY 1 cut(s) 172
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 5 cut(s) 206, 267, 294, 662, 767
MluNI TGGCCA 1 cut(s) 62
MlyI GAGTC 1 cut(s) 233
MmeI TCCRAC 1 cut(s) 648
MnlI CCTC 5 cut(s) 3, 432, 600, 637, 715
Mox20I TGGCCA 1 cut(s) 62
MscI TGGCCA 1 cut(s) 62
MseI TTAA 3 cut(s) 228, 528, 852
Msp20I TGGCCA 1 cut(s) 62
MspI CCGG 1 cut(s) 80
MwoI GCNNNNNNNGC 5 cut(s) 509, 553, 608, 689, 731
NdeII GATC 6 cut(s) 33, 172, 442, 697, 867, 873
NlaIII CATG 2 cut(s) 777, 868
NmuCI GTSAC 3 cut(s) 236, 578, 707
PciSI GCTCTTC 1 cut(s) 33
PfeI GAWTC 5 cut(s) 125, 154, 179, 337, 673
PkrI GCNGC 4 cut(s) 549, 610, 694, 736
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
PpuMI RGGWCCY 1 cut(s) 419
Psp5II RGGWCCY 1 cut(s) 419
PspPI GGNCC 2 cut(s) 419, 600
PspPPI RGGWCCY 1 cut(s) 419
PstNI CAGNNNCTG 2 cut(s) 176, 460
PsuI RGATCY 1 cut(s) 172
SapI GCTCTTC 1 cut(s) 33
SaqAI TTAA 3 cut(s) 228, 528, 852
SatI GCNGC 4 cut(s) 548, 609, 693, 735
Sau3AI GATC 6 cut(s) 33, 172, 442, 697, 867, 873
Sau96I GGNCC 2 cut(s) 419, 600
SchI GAGTC 1 cut(s) 233
SfaNI GCATC 1 cut(s) 221
SinI GGWCC 1 cut(s) 419
Sse9I AATT 5 cut(s) 206, 267, 294, 662, 767
SsiI CCGC 2 cut(s) 548, 695
SspMI CTAG 2 cut(s) 299, 342
TaaI ACNGT 2 cut(s) 133, 584
TaiI ACGT 1 cut(s) 144
TaqI TCGA 4 cut(s) 128, 135, 365, 762
TasI AATT 5 cut(s) 206, 267, 294, 662, 767
TauI GCSGC 1 cut(s) 550
TfiI GAWTC 5 cut(s) 125, 154, 179, 337, 673
Tru1I TTAA 3 cut(s) 228, 528, 852
Tru9I TTAA 3 cut(s) 228, 528, 852
TscAI CASTG 1 cut(s) 397
TseFI GTSAC 3 cut(s) 236, 578, 707
TseI GCWGC 3 cut(s) 608, 692, 734
Tsp45I GTSAC 3 cut(s) 236, 578, 707
TspDTI ATGAA 5 cut(s) 260, 347, 479, 666, 795
TspGWI ACGGA 1 cut(s) 566
TspRI CASTG 1 cut(s) 397
VpaK11BI GGWCC 1 cut(s) 419
XapI RAATTY 2 cut(s) 662, 767
XbaI TCTAGA 1 cut(s) 298
XmiI GTMKAC 1 cut(s) 617
XspI CTAG 2 cut(s) 299, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.