Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8367675.1

Orthogroup ID

OG0014024

Physical Location & Seq

Genomic Coordinates Reverse (-)

281 .. 1031

Gene Structure 751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8367675.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atggtggtacttgttaagtctatgaagaatccgaggagtgctctgatcaagacctccatcatggcttcggccgatttcttcaatgcctttggtgacagtttgcttgactccaccacctctgatgcatttgaccaattgctgctgcaattgctgctgaaagcctcccaagacaagaggtttgtttgtgaagaagcagacaaggcgctaagcgcaatggtgaagtccttgactcctctgcctctgcttcataggcttaaagcctatgtcacccatgcccacctcaaagtcagagccaaagctgccatttccatctcaacttgtgtctctaagatggggctggaaggaatgaaagattatggactggttgctctggttaaaatggctgcggattcgctgaatgataggctgcctgaggcaagagaagcggcaaggagtattgtgacttcggtgtacaatgcctttactgagaatgaagaggagaagcaggagatatggctgagcttttgcgaatctaatttgacaccaattcatgctcatgccatggtcaagtttacttcttctcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N

Protein Analysis

188

Amino Acids

20.73

Weight (kDa)

7.73

Isoelectric Point (pI)

35.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15830
fragaria_vesca	FvH4_4g18210
malus_domestica	MD13G1168000.v1.1 MD16G1168400.v1.1
prunus_persica	Prupe.1G135600_v2.0.a1
pyrus_communis	pycom13g14380 pycom16g14180
rosa_chinensis	RchiOBHm_Chr4g0422361
rosa_laevigata	RLG00000007616
rosa_multiflora	Rmu_co8367675.1_g000001 Rmu_sc0013245.1_g000010
rosa_roxburghii	Rroxscaffold_5G00364480
rosa_rugosa	Rorug04G0179400
rosa_samantha	Rh4AG238800 Rh4BG242400 Rh4CG253900
rosa_wichuraiana	Rw4G020650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	386, 425
AcoI	YGGCCR	1 cut(s)	69
AfaI	GTAC	2 cut(s)	9, 452
AgsI	TTSAA	1 cut(s)	82
AluBI	AGCT	2 cut(s)	299, 501
AluI	AGCT	2 cut(s)	299, 501
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	328
AoxI	GGCC	1 cut(s)	69
ApeKI	GCWGC	6 cut(s)	139, 142, 151, 299, 383, 406
ArsI	GACNNNNNNTTYG	2 cut(s)	161, 193
AspLEI	GCGC	2 cut(s)	205, 212
AsuHPI	GGTGA	3 cut(s)	104, 229, 259
AxyI	CCTNAGG	1 cut(s)	411
BarI	GAAGNNNNNNTAC	2 cut(s)	427, 459
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	6 cut(s)	126, 129, 138, 286, 370, 393
BccI	CCATC	3 cut(s)	65, 317, 325
BclI	TGATCA	1 cut(s)	45
BcoDI	GTCTC	1 cut(s)	328
BfoI	RGCGCY	1 cut(s)	206
BisI	GCNGC	7 cut(s)	140, 143, 152, 300, 384, 407, 426
BlpI	GCTNAGC	2 cut(s)	206, 497
BlsI	GCNGC	7 cut(s)	141, 144, 153, 301, 385, 408, 427
BmsI	GCATC	1 cut(s)	112
BplI	GAGNNNNNCTC	2 cut(s)	25, 57
Bpu1102I	GCTNAGC	2 cut(s)	206, 497
BsaJI	CCNNGG	2 cut(s)	32, 540
Bse1I	ACTGG	1 cut(s)	366
Bse21I	CCTNAGG	1 cut(s)	411
Bse3DI	GCAATG	1 cut(s)	219
BseDI	CCNNGG	2 cut(s)	32, 540
BseMI	GCAATG	1 cut(s)	219
BseMII	CTCAG	3 cut(s)	402, 456, 488
BseNI	ACTGG	1 cut(s)	366
BseRI	GAGGAG	3 cut(s)	49, 222, 491
BseX3I	CGGCCG	1 cut(s)	69
BseXI	GCAGC	6 cut(s)	126, 129, 138, 286, 370, 393
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	1 cut(s)	71
BsiEI	CGRYCG	1 cut(s)	72
BsiHKAI	GWGCWC	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	328
BsnI	GGCC	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp1407I	TGTACA	1 cut(s)	450
Bsp143I	GATC	1 cut(s)	45
Bsp1720I	GCTNAGC	2 cut(s)	206, 497
Bsp19I	CCATGG	1 cut(s)	540
BspACI	CCGC	2 cut(s)	386, 425
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	3 cut(s)	403, 457, 489
BsrDI	GCAATG	1 cut(s)	219
BsrGI	TGTACA	1 cut(s)	450
BsrI	ACTGG	1 cut(s)	366
BssECI	CCNNGG	2 cut(s)	32, 540
BssMI	GATC	1 cut(s)	45
BssT1I	CCWWGG	1 cut(s)	540
Bst4CI	ACNGT	1 cut(s)	98
Bst6I	CTCTTC	1 cut(s)	468
BstAPI	GCANNNNNTGC	1 cut(s)	151
BstAUI	TGTACA	1 cut(s)	450
BstDEI	CTNAG	6 cut(s)	206, 327, 411, 465, 497, 561
BstDSI	CCRYGG	1 cut(s)	540
BstH2I	RGCGCY	1 cut(s)	206
BstHHI	GCGC	2 cut(s)	205, 212
BstKTI	GATC	1 cut(s)	48
BstMAI	GTCTC	1 cut(s)	328
BstMBI	GATC	1 cut(s)	45
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	7 cut(s)	148, 151, 200, 209, 250, 299, 422
BstV1I	GCAGC	6 cut(s)	126, 129, 138, 286, 370, 393
BstZI	CGGCCG	1 cut(s)	69
Bsu36I	CCTNAGG	1 cut(s)	411
BsuRI	GGCC	1 cut(s)	71
BtgI	CCRYGG	1 cut(s)	540
CfoI	GCGC	2 cut(s)	205, 212
Csp6I	GTAC	2 cut(s)	8, 451
CviAII	CATG	5 cut(s)	61, 272, 530, 536, 541
CviQI	GTAC	2 cut(s)	8, 451
DdeI	CTNAG	6 cut(s)	206, 327, 411, 465, 497, 561
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
EaeI	YGGCCR	1 cut(s)	69
EagI	CGGCCG	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
EclXI	CGGCCG	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	540
Eco52I	CGGCCG	1 cut(s)	69
Eco81I	CCTNAGG	1 cut(s)	411
EcoT14I	CCWWGG	1 cut(s)	540
EcoT22I	ATGCAT	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	540
FaeI	CATG	5 cut(s)	64, 275, 533, 539, 544
FatI	CATG	5 cut(s)	60, 271, 529, 535, 540
FbaI	TGATCA	1 cut(s)	45
Fnu4HI	GCNGC	7 cut(s)	140, 143, 152, 300, 384, 407, 426
Fsp4HI	GCNGC	7 cut(s)	140, 143, 152, 300, 384, 407, 426
GlaI	GCGC	2 cut(s)	204, 211
GluI	GCNGC	7 cut(s)	140, 143, 152, 300, 384, 407, 426
HaeII	RGCGCY	1 cut(s)	206
HaeIII	GGCC	1 cut(s)	71
HhaI	GCGC	2 cut(s)	205, 212
Hin1II	CATG	5 cut(s)	64, 275, 533, 539, 544
Hin6I	GCGC	2 cut(s)	203, 210
HinP1I	GCGC	2 cut(s)	203, 210
HinfI	GANTC	5 cut(s)	28, 107, 229, 389, 509
HphI	GGTGA	3 cut(s)	104, 229, 259
Hpy166II	GTNNAC	2 cut(s)	451, 552
Hpy188I	TCNGA	4 cut(s)	33, 45, 121, 290
Hpy188III	TCNNGA	1 cut(s)	49
Hpy8I	GTNNAC	2 cut(s)	451, 552
HpyAV	CCTTC	1 cut(s)	335
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4V	TGCA	2 cut(s)	125, 145
HpyF10VI	GCNNNNNNNGC	7 cut(s)	148, 151, 200, 209, 250, 299, 422
HpyF3I	CTNAG	6 cut(s)	206, 327, 411, 465, 497, 561
Hsp92II	CATG	5 cut(s)	64, 275, 533, 539, 544
HspAI	GCGC	2 cut(s)	203, 210
Ksp22I	TGATCA	1 cut(s)	45
Kzo9I	GATC	1 cut(s)	45
LpnPI	CCDG	5 cut(s)	323, 347, 356, 423, 470
Lsp1109I	GCAGC	6 cut(s)	126, 129, 138, 286, 370, 393
LweI	GCATC	1 cut(s)	112
MaeIII	GTNAC	3 cut(s)	92, 265, 439
MalI	GATC	1 cut(s)	47
MboI	GATC	1 cut(s)	45
MboII	GAAGA	5 cut(s)	37, 70, 200, 485, 549
MfeI	CAATTG	2 cut(s)	134, 146
MhlI	GDGCHC	1 cut(s)	43
MluCI	AATT	4 cut(s)	134, 146, 514, 525
MlyI	GAGTC	2 cut(s)	101, 223
Mph1103I	ATGCAT	1 cut(s)	127
MseI	TTAA	3 cut(s)	15, 255, 375
MslI	CAYNNNNRTG	1 cut(s)	534
MunI	CAATTG	2 cut(s)	134, 146
MwoI	GCNNNNNNNGC	7 cut(s)	148, 151, 200, 209, 250, 299, 422
NcoI	CCATGG	1 cut(s)	540
NdeII	GATC	1 cut(s)	45
NlaIII	CATG	5 cut(s)	64, 275, 533, 539, 544
NmuCI	GTSAC	3 cut(s)	92, 265, 439
NsiI	ATGCAT	1 cut(s)	127
PfeI	GAWTC	3 cut(s)	28, 389, 509
PkrI	GCNGC	7 cut(s)	141, 144, 153, 301, 385, 408, 427
PleI	GAGTC	2 cut(s)	101, 223
PpsI	GAGTC	2 cut(s)	101, 223
RsaI	GTAC	2 cut(s)	9, 452
RsaNI	GTAC	2 cut(s)	8, 451
RseI	CAYNNNNRTG	1 cut(s)	534
SaqAI	TTAA	3 cut(s)	15, 255, 375
SatI	GCNGC	7 cut(s)	140, 143, 152, 300, 384, 407, 426
Sau3AI	GATC	1 cut(s)	45
SchI	GAGTC	2 cut(s)	101, 223
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	6 cut(s)	56, 119, 179, 282, 301, 503
SfaNI	GCATC	1 cut(s)	112
SmiMI	CAYNNNNRTG	1 cut(s)	534
Sse9I	AATT	4 cut(s)	134, 146, 514, 525
SsiI	CCGC	2 cut(s)	386, 425
StyI	CCWWGG	1 cut(s)	540
TaaI	ACNGT	1 cut(s)	98
TasI	AATT	4 cut(s)	134, 146, 514, 525
TatI	WGTACW	1 cut(s)	450
TauI	GCSGC	1 cut(s)	428
TfiI	GAWTC	3 cut(s)	28, 389, 509
Tru1I	TTAA	3 cut(s)	15, 255, 375
Tru9I	TTAA	3 cut(s)	15, 255, 375
TseFI	GTSAC	3 cut(s)	92, 265, 439
TseI	GCWGC	6 cut(s)	139, 142, 151, 299, 383, 406
Tsp45I	GTSAC	3 cut(s)	92, 265, 439
TspDTI	ATGAA	5 cut(s)	38, 236, 362, 486, 518
Zsp2I	ATGCAT	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.