FvH4_4g18210

CLASP N terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014024
Physical Location & Seq
Reverse (-)
22180106 .. 22182600
2495 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g18210.t1

Sequence Viewer

Length: 900 bp
ATGGCAATGGCGCTCAGACCCATCGACAATGCTCTCCCAACCACACCGGATAGACCCATAAAGCCAACCAAAGTTGCTGTTCCCACCCAAAAGAAATCTGATTTGGGCCTCAATGACGAAAACAAGGCTCCGCTTCCGGTAGCCGCTGAAGCCACCATTGACTACATCTCCTCTGAGAATCTCAAACCCATTTCAGACCCTGATTCCAACATTCAGAGCTTGATTGGAGGACTGGACTCGAAGGATTGGATTAAAGTCTGCGAGTCCCTGAACAATGCTAGGCGTTTTGCTCTGTTTCACTCTGATCTTTTGGTGCCTACCCTAGAGAAAGTGATGGTGGTGTTGGTTAAGTCCATGAAGAATCCGAGGAGTGCTCTGATCAAGACCTCCATCATGGCTTCGGCCGATATCTTCAATGCCTTCGGTGACAGATTGCTTGACTCCACCACCTCTGATGCATTTGATCAATTGCTTCTGCAGTTGCTGCTGAAAGCTTCACAAGATAAGAGGTTTGTTTGTGAAGAGGCAGACAAGGCGCTAATCACAATGGTGAAGTCCTTGACTCCTCTGCCTCTGCTTAATAGGCTTAAAGCCTATGTCACCCATGCTCACCTCAAAGTCAGGGCCAAAGCTGCCATATCCATCTCAACCTGTGTCTCTAAGATGGGGCTGGAAGGAATGAAAGATTATGGGCTGGCTGCTCTAGTTAAAATGGGGGCAGATTCCCTGAATGATAGGCTGCCTGAGGCAAGAGAAGCAGCAAGGAGTATTATGACTTCGGTCTACAATGCCTACACTGAGAATGAAGAGGAGAAGCAGGAGGTATGGCTGAGCTTTTGTGAATTAAATTTGACACCAATTCATGCTCATGCCATGGTCAAGTTTACTTCTTCTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLASP_N

Protein Analysis

300

Amino Acids

32.9

Weight (kDa)

6.96

Isoelectric Point (pI)

36.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014024)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15830
fragaria_vesca FvH4_4g18210
malus_domestica MD13G1168000.v1.1 MD16G1168400.v1.1
prunus_persica Prupe.1G135600_v2.0.a1
pyrus_communis pycom13g14380 pycom16g14180
rosa_chinensis RchiOBHm_Chr4g0422361
rosa_laevigata RLG00000007616
rosa_multiflora Rmu_co8367675.1_g000001 Rmu_sc0013245.1_g000010
rosa_roxburghii Rroxscaffold_5G00364480
rosa_rugosa Rorug04G0179400
rosa_samantha Rh4AG238800 Rh4BG242400 Rh4CG253900
rosa_wichuraiana Rw4G020650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 313
AccI GTMKAC 1 cut(s) 783
AciI CCGC 2 cut(s) 131, 144
AcoI YGGCCR 1 cut(s) 402
AcsI RAATTY 1 cut(s) 847
AcuI CTGAAG 1 cut(s) 168
AgsI TTSAA 1 cut(s) 415
AjuI GAANNNNNNNTTGG 2 cut(s) 86, 118
AleI CACNNNNGTG 1 cut(s) 548
AluBI AGCT 4 cut(s) 219, 494, 632, 834
AluI AGCT 4 cut(s) 219, 494, 632, 834
Alw21I GWGCWC 1 cut(s) 376
Alw26I GTCTC 1 cut(s) 661
AlwNI CAGNNNCTG 2 cut(s) 200, 484
AoxI GGCC 3 cut(s) 106, 402, 624
ApeKI GCWGC 5 cut(s) 484, 632, 698, 739, 758
ApoI RAATTY 1 cut(s) 847
AspLEI GCGC 2 cut(s) 13, 538
AspS9I GGNCC 2 cut(s) 106, 624
AsuHPI GGTGA 4 cut(s) 437, 562, 592, 602
AxyI CCTNAGG 1 cut(s) 744
BanI GGYRCC 1 cut(s) 313
BarI GAAGNNNNNNTAC 2 cut(s) 760, 792
Bbv12I GWGCWC 1 cut(s) 376
BbvI GCAGC 5 cut(s) 471, 619, 685, 726, 770
BccI CCATC 5 cut(s) 29, 328, 398, 650, 658
BclI TGATCA 2 cut(s) 378, 463
BcoDI GTCTC 1 cut(s) 661
BfaI CTAG 3 cut(s) 279, 323, 704
BfmI CTRYAG 1 cut(s) 476
BfoI RGCGCY 2 cut(s) 14, 539
BisI GCNGC 6 cut(s) 144, 485, 633, 699, 740, 759
BlpI GCTNAGC 1 cut(s) 830
BlsI GCNGC 6 cut(s) 145, 486, 634, 700, 741, 760
BmgT120I GGNCC 2 cut(s) 106, 624
BmiI GGNNCC 2 cut(s) 129, 315
BmsI GCATC 1 cut(s) 445
BoxI GACNNNNGTC 1 cut(s) 779
BplI GAGNNNNNCTC 2 cut(s) 358, 390
Bpu1102I GCTNAGC 1 cut(s) 830
BsaJI CCNNGG 2 cut(s) 365, 873
BsaWI WCCGGW 2 cut(s) 46, 136
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bse1I ACTGG 1 cut(s) 237
Bse21I CCTNAGG 1 cut(s) 744
Bse3DI GCAATG 1 cut(s) 12
BseDI CCNNGG 2 cut(s) 365, 873
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 5 cut(s) 28, 165, 735, 789, 821
BseNI ACTGG 1 cut(s) 237
BseRI GAGGAG 4 cut(s) 160, 382, 555, 824
BseX3I CGGCCG 1 cut(s) 402
BseXI GCAGC 5 cut(s) 471, 619, 685, 726, 770
Bsh1285I CGRYCG 1 cut(s) 405
BshFI GGCC 3 cut(s) 108, 404, 626
BshNI GGYRCC 1 cut(s) 313
BsiEI CGRYCG 1 cut(s) 405
BsiHKAI GWGCWC 1 cut(s) 376
BsiSI CCGG 2 cut(s) 47, 137
BslFI GGGAC 1 cut(s) 250
BsmAI GTCTC 1 cut(s) 661
BsmFI GGGAC 1 cut(s) 250
BsnI GGCC 3 cut(s) 108, 404, 626
Bsp1286I GDGCHC 1 cut(s) 376
Bsp143I GATC 3 cut(s) 304, 378, 463
Bsp1720I GCTNAGC 1 cut(s) 830
Bsp19I CCATGG 1 cut(s) 873
BspACI CCGC 2 cut(s) 131, 144
BspANI GGCC 3 cut(s) 108, 404, 626
BspCNI CTCAG 5 cut(s) 27, 166, 736, 790, 822
BspLI GGNNCC 2 cut(s) 129, 315
BspMAI CTGCAG 1 cut(s) 480
BspT107I GGYRCC 1 cut(s) 313
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 1 cut(s) 237
BssECI CCNNGG 2 cut(s) 365, 873
BssMI GATC 3 cut(s) 304, 378, 463
BssT1I CCWWGG 1 cut(s) 873
Bst6I CTCTTC 2 cut(s) 516, 801
BstAPI GCANNNNNTGC 1 cut(s) 484
BstC8I GCNNGC 1 cut(s) 696
BstDEI CTNAG 7 cut(s) 14, 174, 660, 744, 798, 830, 894
BstDSI CCRYGG 1 cut(s) 873
BstH2I RGCGCY 2 cut(s) 14, 539
BstHHI GCGC 2 cut(s) 13, 538
BstKTI GATC 3 cut(s) 307, 381, 466
BstMAI GTCTC 1 cut(s) 661
BstMBI GATC 3 cut(s) 304, 378, 463
BstMCI CGRYCG 1 cut(s) 405
BstMWI GCNNNNNNNGC 6 cut(s) 149, 484, 533, 583, 632, 755
BstPAI GACNNNNGTC 1 cut(s) 779
BstSFI CTRYAG 1 cut(s) 476
BstV1I GCAGC 5 cut(s) 471, 619, 685, 726, 770
BstZI CGGCCG 1 cut(s) 402
Bsu36I CCTNAGG 1 cut(s) 744
BsuRI GGCC 3 cut(s) 108, 404, 626
BtgI CCRYGG 1 cut(s) 873
BtsIMutI CAGTG 1 cut(s) 795
Cac8I GCNNGC 1 cut(s) 696
CaiI CAGNNNCTG 2 cut(s) 200, 484
CfoI GCGC 2 cut(s) 13, 538
Cfr13I GGNCC 2 cut(s) 106, 624
CviAII CATG 6 cut(s) 355, 394, 605, 863, 869, 874
DdeI CTNAG 7 cut(s) 14, 174, 660, 744, 798, 830, 894
DpnI GATC 3 cut(s) 306, 380, 465
DpnII GATC 3 cut(s) 304, 378, 463
EaeI YGGCCR 1 cut(s) 402
EagI CGGCCG 1 cut(s) 402
Eam1104I CTCTTC 2 cut(s) 516, 801
EarI CTCTTC 2 cut(s) 516, 801
EclXI CGGCCG 1 cut(s) 402
Eco130I CCWWGG 1 cut(s) 873
Eco32I GATATC 1 cut(s) 409
Eco52I CGGCCG 1 cut(s) 402
Eco57I CTGAAG 1 cut(s) 168
Eco81I CCTNAGG 1 cut(s) 744
EcoRV GATATC 1 cut(s) 409
EcoT14I CCWWGG 1 cut(s) 873
EcoT22I ATGCAT 1 cut(s) 460
ErhI CCWWGG 1 cut(s) 873
FaeI CATG 6 cut(s) 358, 397, 608, 866, 872, 877
FaqI GGGAC 1 cut(s) 250
FatI CATG 6 cut(s) 354, 393, 604, 862, 868, 873
FbaI TGATCA 2 cut(s) 378, 463
FblI GTMKAC 1 cut(s) 783
Fnu4HI GCNGC 6 cut(s) 144, 485, 633, 699, 740, 759
Fsp4HI GCNGC 6 cut(s) 144, 485, 633, 699, 740, 759
FspBI CTAG 3 cut(s) 279, 323, 704
GlaI GCGC 2 cut(s) 12, 537
GluI GCNGC 6 cut(s) 144, 485, 633, 699, 740, 759
HaeII RGCGCY 2 cut(s) 14, 539
HaeIII GGCC 3 cut(s) 108, 404, 626
HapII CCGG 2 cut(s) 47, 137
HhaI GCGC 2 cut(s) 13, 538
Hin1II CATG 6 cut(s) 358, 397, 608, 866, 872, 877
Hin6I GCGC 2 cut(s) 11, 536
HinP1I GCGC 2 cut(s) 11, 536
HindIII AAGCTT 1 cut(s) 492
HinfI GANTC 8 cut(s) 178, 203, 236, 263, 361, 440, 562, 722
HpaII CCGG 2 cut(s) 47, 137
HphI GGTGA 4 cut(s) 437, 562, 592, 602
Hpy166II GTNNAC 2 cut(s) 784, 885
Hpy188I TCNGA 9 cut(s) 17, 100, 175, 196, 216, 304, 366, 378, 454
Hpy188III TCNNGA 1 cut(s) 382
Hpy8I GTNNAC 2 cut(s) 784, 885
HpyAV CCTTC 3 cut(s) 235, 430, 668
HpyCH4V TGCA 2 cut(s) 458, 478
HpyF10VI GCNNNNNNNGC 6 cut(s) 149, 484, 533, 583, 632, 755
HpyF3I CTNAG 7 cut(s) 14, 174, 660, 744, 798, 830, 894
Hsp92II CATG 6 cut(s) 358, 397, 608, 866, 872, 877
HspAI GCGC 2 cut(s) 11, 536
Ksp22I TGATCA 2 cut(s) 378, 463
Kzo9I GATC 3 cut(s) 304, 378, 463
LmnI GCTCC 1 cut(s) 133
Lsp1109I GCAGC 5 cut(s) 471, 619, 685, 726, 770
LweI GCATC 1 cut(s) 445
MaeI CTAG 3 cut(s) 279, 323, 704
MaeIII GTNAC 2 cut(s) 425, 598
MalI GATC 3 cut(s) 306, 380, 465
MboI GATC 3 cut(s) 304, 378, 463
MboII GAAGA 5 cut(s) 370, 403, 533, 818, 882
MfeI CAATTG 1 cut(s) 467
MhlI GDGCHC 1 cut(s) 376
MluCI AATT 4 cut(s) 467, 842, 847, 858
MlyI GAGTC 4 cut(s) 230, 272, 434, 556
MmeI TCCRAC 1 cut(s) 231
Mph1103I ATGCAT 1 cut(s) 460
MseI TTAA 6 cut(s) 252, 348, 579, 588, 708, 845
MslI CAYNNNNRTG 2 cut(s) 548, 867
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 2 cut(s) 47, 137
MunI CAATTG 1 cut(s) 467
MwoI GCNNNNNNNGC 6 cut(s) 149, 484, 533, 583, 632, 755
NcoI CCATGG 1 cut(s) 873
NdeII GATC 3 cut(s) 304, 378, 463
NlaIII CATG 6 cut(s) 358, 397, 608, 866, 872, 877
NlaIV GGNNCC 2 cut(s) 129, 315
NmuCI GTSAC 2 cut(s) 425, 598
NsiI ATGCAT 1 cut(s) 460
OliI CACNNNNGTG 1 cut(s) 548
PfeI GAWTC 4 cut(s) 178, 203, 361, 722
PkrI GCNGC 6 cut(s) 145, 486, 634, 700, 741, 760
PleI GAGTC 4 cut(s) 230, 271, 434, 556
PpsI GAGTC 4 cut(s) 230, 271, 434, 556
PshAI GACNNNNGTC 1 cut(s) 779
PspN4I GGNNCC 2 cut(s) 129, 315
PspPI GGNCC 2 cut(s) 106, 624
PstI CTGCAG 1 cut(s) 480
PstNI CAGNNNCTG 2 cut(s) 200, 484
RseI CAYNNNNRTG 2 cut(s) 548, 867
SaqAI TTAA 6 cut(s) 252, 348, 579, 588, 708, 845
SatI GCNGC 6 cut(s) 144, 485, 633, 699, 740, 759
Sau3AI GATC 3 cut(s) 304, 378, 463
Sau96I GGNCC 2 cut(s) 106, 624
SchI GAGTC 4 cut(s) 230, 272, 434, 556
SduI GDGCHC 1 cut(s) 376
SfaNI GCATC 1 cut(s) 445
SfcI CTRYAG 1 cut(s) 476
SmiMI CAYNNNNRTG 2 cut(s) 548, 867
Sse9I AATT 4 cut(s) 467, 842, 847, 858
SsiI CCGC 2 cut(s) 131, 144
SspMI CTAG 3 cut(s) 279, 323, 704
StyI CCWWGG 1 cut(s) 873
TaqI TCGA 2 cut(s) 24, 239
TaqII GACCGA 1 cut(s) 769
TasI AATT 4 cut(s) 467, 842, 847, 858
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 4 cut(s) 178, 203, 361, 722
Tru1I TTAA 6 cut(s) 252, 348, 579, 588, 708, 845
Tru9I TTAA 6 cut(s) 252, 348, 579, 588, 708, 845
TscAI CASTG 1 cut(s) 802
TseFI GTSAC 2 cut(s) 425, 598
TseI GCWGC 5 cut(s) 484, 632, 698, 739, 758
Tsp45I GTSAC 2 cut(s) 425, 598
TspDTI ATGAA 4 cut(s) 371, 695, 819, 851
TspRI CASTG 1 cut(s) 802
XapI RAATTY 1 cut(s) 847
XmiI GTMKAC 1 cut(s) 783
XspI CTAG 3 cut(s) 279, 323, 704
Zsp2I ATGCAT 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.