Prupe.1G135600_v2.0.a1

CLASP N terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014024
Physical Location & Seq
Forward (+)
10682390 .. 10684274
1885 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G135600.1

Sequence Viewer

Length: 903 bp
ATGGCTATGGCTCTCAGGCCCATCGATAATGCTCTTCCAACCACACCAGAAAGGCCGAAAAAGCAAACCAAAGTTCCTGTTTCTATCCAAAAGCAACCCGAGTTTGGGGTCAATGATGAAAACCAGGCTCCACTTCCTGCAGCAACCATTGATGCCACCATTGATTATATCTCTTCTGAGAATCTCAAACCCATCTCAGACCCTGATTTCAAAATTCTGAGCTTGAATGAGGGATTAGATTCAAAGGATTGGGTGAAGGTGTGCGAGTCTCTGAACAATGTTAGGCGTTTTGCACTCTATCACTCTGCTCTTTTGTTTCCTACTCTAGAGAAAGTTATGGTGGTGATGGTTAAGGCAATGAAGAATCCCAGAAGTGCTTTATGCAAGACATCCATTATGGCGTCGTTTGATATCTTTAAGGCCTTTGGTGACAGTTTATTTGACTCTGCCACCTCTGCTGCATTTGATCAATTGCTGCTGCAACTGCTGCTGAAAGCGTCTCAAGACAAACGGTTTGTGTGCGAAGAAGCAGATAGGACCCTGAACACAATGGTGCAGTCTTTGACTCCTCTGCCTTTGCTTCAAAAGCTTAGAGCCTATGCTTCCCATGCCAACCCCCGAGTCAGAGCCAAAGCTGCCGTTTCCGTCTCAGCTTGTGTCTCTAAGATGGGGCTTGAAGGAATGAAGGATTATGGGCTGGTCTCTTTGGTTAAAATGGCTGCAGATTTGTTGAATGATAGGCTGCCGGAGGCAAGGGAAGCGGCACGGGGTATTGTGCTTTCGGTGTACAATGCCTATACAGAGAATGAAGAGGAGAAGCAAGAGATATGGCTAAACTTTTGCCAGTCTAATTTGACACCAATTCATGCTCAGTCCATGGTCAAAATTACTTCTTCTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLASP_N

Protein Analysis

301

Amino Acids

33.26

Weight (kDa)

7.59

Isoelectric Point (pI)

44.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014024)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15830
fragaria_vesca FvH4_4g18210
malus_domestica MD13G1168000.v1.1 MD16G1168400.v1.1
prunus_persica Prupe.1G135600_v2.0.a1
pyrus_communis pycom13g14380 pycom16g14180
rosa_chinensis RchiOBHm_Chr4g0422361
rosa_laevigata RLG00000007616
rosa_multiflora Rmu_co8367675.1_g000001 Rmu_sc0013245.1_g000010
rosa_roxburghii Rroxscaffold_5G00364480
rosa_rugosa Rorug04G0179400
rosa_samantha Rh4AG238800 Rh4BG242400 Rh4CG253900
rosa_wichuraiana Rw4G020650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 761
AcsI RAATTY 1 cut(s) 213
AcyI GRCGYC 1 cut(s) 401
AfaI GTAC 1 cut(s) 788
AfiI CCNNNNNNNGG 2 cut(s) 104, 105
AgsI TTSAA 6 cut(s) 211, 226, 243, 584, 677, 733
AjnI CCWGG 1 cut(s) 123
AleI CACNNNNGTG 1 cut(s) 551
AluBI AGCT 4 cut(s) 222, 589, 635, 653
AluI AGCT 4 cut(s) 222, 589, 635, 653
Alw26I GTCTC 5 cut(s) 273, 504, 652, 664, 706
AlwNI CAGNNNCTG 1 cut(s) 203
Ama87I CYCGRG 2 cut(s) 98, 618
AoxI GGCC 3 cut(s) 17, 53, 420
ApeKI GCWGC 8 cut(s) 140, 458, 475, 478, 487, 635, 719, 742
ApoI RAATTY 1 cut(s) 213
ArsI GACNNNNNNTTYG 4 cut(s) 422, 454, 497, 529
AspS9I GGNCC 2 cut(s) 18, 537
AsuHPI GGTGA 3 cut(s) 265, 355, 440
AvaI CYCGRG 2 cut(s) 98, 618
AvaII GGWCC 1 cut(s) 537
BbvI GCAGC 8 cut(s) 152, 445, 462, 465, 474, 622, 706, 729
BccI CCATC 4 cut(s) 29, 200, 340, 661
BceAI ACGGC 1 cut(s) 623
BciT130I CCWGG 1 cut(s) 125
BclI TGATCA 1 cut(s) 466
BcoDI GTCTC 5 cut(s) 273, 504, 652, 664, 706
BfaI CTAG 1 cut(s) 326
BfmI CTRYAG 2 cut(s) 138, 720
BisI GCNGC 9 cut(s) 141, 459, 476, 479, 488, 636, 720, 743, 762
BlsI GCNGC 9 cut(s) 142, 460, 477, 480, 489, 637, 721, 744, 763
Bme1390I CCNGG 1 cut(s) 125
Bme18I GGWCC 1 cut(s) 537
BmeT110I CYCGRG 2 cut(s) 98, 618
BmgT120I GGNCC 2 cut(s) 18, 537
BmiI GGNNCC 2 cut(s) 129, 539
BmrFI CCNGG 1 cut(s) 125
BmsI GCATC 1 cut(s) 142
BpuEI CTTGAG 1 cut(s) 486
Bsa29I ATCGAT 1 cut(s) 24
BsaHI GRCGYC 1 cut(s) 401
BsaI GGTCTC 1 cut(s) 706
BsaJI CCNNGG 1 cut(s) 876
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 105
Bse1I ACTGG 1 cut(s) 844
Bse3DI GCAATG 1 cut(s) 363
BseBI CCWGG 1 cut(s) 125
BseCI ATCGAT 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 876
BseGI GGATG 1 cut(s) 389
BseLI CCNNNNNNNGG 2 cut(s) 104, 105
BseMI GCAATG 1 cut(s) 363
BseMII CTCAG 6 cut(s) 28, 168, 209, 210, 663, 884
BseNI ACTGG 1 cut(s) 844
BseRI GAGGAG 2 cut(s) 558, 827
BseXI GCAGC 8 cut(s) 152, 445, 462, 465, 474, 622, 706, 729
BsgI GTGCAG 1 cut(s) 575
BshFI GGCC 3 cut(s) 19, 55, 422
BshVI ATCGAT 1 cut(s) 24
BsiHKCI CYCGRG 2 cut(s) 98, 618
BsiSI CCGG 1 cut(s) 746
BslI CCNNNNNNNGG 2 cut(s) 104, 105
BsmAI GTCTC 5 cut(s) 273, 504, 652, 664, 706
BsmBI CGTCTC 2 cut(s) 504, 652
BsnI GGCC 3 cut(s) 19, 55, 422
Bso31I GGTCTC 1 cut(s) 706
BsoBI CYCGRG 2 cut(s) 98, 618
Bsp1407I TGTACA 1 cut(s) 786
Bsp143I GATC 1 cut(s) 466
Bsp19I CCATGG 1 cut(s) 876
BspACI CCGC 1 cut(s) 761
BspANI GGCC 3 cut(s) 19, 55, 422
BspCNI CTCAG 6 cut(s) 27, 169, 209, 210, 662, 883
BspDI ATCGAT 1 cut(s) 24
BspLI GGNNCC 2 cut(s) 129, 539
BspMAI CTGCAG 2 cut(s) 142, 724
BspQI GCTCTTC 1 cut(s) 39
BspTNI GGTCTC 1 cut(s) 706
BsrDI GCAATG 1 cut(s) 363
BsrGI TGTACA 1 cut(s) 786
BsrI ACTGG 1 cut(s) 844
BssECI CCNNGG 1 cut(s) 876
BssMI GATC 1 cut(s) 466
BssNI GRCGYC 1 cut(s) 401
BssT1I CCWWGG 1 cut(s) 876
Bst2UI CCWGG 1 cut(s) 125
Bst4CI ACNGT 2 cut(s) 434, 513
Bst6I CTCTTC 3 cut(s) 39, 178, 804
BstACI GRCGYC 1 cut(s) 401
BstAPI GCANNNNNTGC 1 cut(s) 487
BstAUI TGTACA 1 cut(s) 786
BstDEI CTNAG 9 cut(s) 14, 177, 196, 218, 590, 649, 663, 870, 897
BstDSI CCRYGG 1 cut(s) 876
BstF5I GGATG 1 cut(s) 389
BstKTI GATC 1 cut(s) 469
BstMAI GTCTC 5 cut(s) 273, 504, 652, 664, 706
BstMBI GATC 1 cut(s) 466
BstMWI GCNNNNNNNGC 8 cut(s) 61, 455, 484, 487, 586, 608, 635, 758
BstNI CCWGG 1 cut(s) 125
BstSCI CCNGG 1 cut(s) 123
BstSFI CTRYAG 2 cut(s) 138, 720
BstV1I GCAGC 8 cut(s) 152, 445, 462, 465, 474, 622, 706, 729
Bsu15I ATCGAT 1 cut(s) 24
BsuRI GGCC 3 cut(s) 19, 55, 422
BsuTUI ATCGAT 1 cut(s) 24
BtgI CCRYGG 1 cut(s) 876
BtsCI GGATG 1 cut(s) 389
CaiI CAGNNNCTG 1 cut(s) 203
Cfr13I GGNCC 2 cut(s) 18, 537
ClaI ATCGAT 1 cut(s) 24
CseI GACGC 2 cut(s) 390, 486
Csp6I GTAC 1 cut(s) 787
CviAII CATG 3 cut(s) 608, 866, 877
CviQI GTAC 1 cut(s) 787
DdeI CTNAG 9 cut(s) 14, 177, 196, 218, 590, 649, 663, 870, 897
DpnI GATC 1 cut(s) 468
DpnII GATC 1 cut(s) 466
Eam1104I CTCTTC 3 cut(s) 39, 178, 804
EarI CTCTTC 3 cut(s) 39, 178, 804
Eco130I CCWWGG 1 cut(s) 876
Eco147I AGGCCT 1 cut(s) 422
Eco31I GGTCTC 1 cut(s) 706
Eco32I GATATC 1 cut(s) 412
Eco47I GGWCC 1 cut(s) 537
Eco88I CYCGRG 2 cut(s) 98, 618
EcoO109I RGGNCCY 1 cut(s) 537
EcoRII CCWGG 1 cut(s) 123
EcoRV GATATC 1 cut(s) 412
EcoT14I CCWWGG 1 cut(s) 876
ErhI CCWWGG 1 cut(s) 876
Esp3I CGTCTC 2 cut(s) 504, 652
FaeI CATG 3 cut(s) 611, 869, 880
FatI CATG 3 cut(s) 607, 865, 876
FbaI TGATCA 1 cut(s) 466
Fnu4HI GCNGC 9 cut(s) 141, 459, 476, 479, 488, 636, 720, 743, 762
FokI GGATG 1 cut(s) 376
Fsp4HI GCNGC 9 cut(s) 141, 459, 476, 479, 488, 636, 720, 743, 762
FspBI CTAG 1 cut(s) 326
GluI GCNGC 9 cut(s) 141, 459, 476, 479, 488, 636, 720, 743, 762
HaeIII GGCC 3 cut(s) 19, 55, 422
HapII CCGG 1 cut(s) 746
HgaI GACGC 2 cut(s) 390, 486
Hin1I GRCGYC 1 cut(s) 401
Hin1II CATG 3 cut(s) 611, 869, 880
HindIII AAGCTT 1 cut(s) 587
HinfI GANTC 7 cut(s) 181, 239, 266, 364, 443, 565, 621
HpaII CCGG 1 cut(s) 746
HphI GGTGA 3 cut(s) 265, 355, 440
Hpy166II GTNNAC 1 cut(s) 787
Hpy188I TCNGA 5 cut(s) 178, 199, 219, 273, 626
Hpy188III TCNNGA 2 cut(s) 326, 503
Hpy8I GTNNAC 1 cut(s) 787
Hpy99I CGWCG 1 cut(s) 406
HpyAV CCTTC 3 cut(s) 250, 671, 679
HpyCH4III ACNGT 2 cut(s) 434, 513
HpyCH4V TGCA 7 cut(s) 140, 293, 384, 461, 481, 556, 722
HpyF10VI GCNNNNNNNGC 8 cut(s) 61, 455, 484, 487, 586, 608, 635, 758
HpyF3I CTNAG 9 cut(s) 14, 177, 196, 218, 590, 649, 663, 870, 897
Hsp92I GRCGYC 1 cut(s) 401
Hsp92II CATG 3 cut(s) 611, 869, 880
Ksp22I TGATCA 1 cut(s) 466
Kzo9I GATC 1 cut(s) 466
LguI GCTCTTC 1 cut(s) 39
LmnI GCTCC 1 cut(s) 133
Lsp1109I GCAGC 8 cut(s) 152, 445, 462, 465, 474, 622, 706, 729
LweI GCATC 1 cut(s) 142
MaeI CTAG 1 cut(s) 326
MaeIII GTNAC 1 cut(s) 428
MalI GATC 1 cut(s) 468
MboI GATC 1 cut(s) 466
MboII GAAGA 6 cut(s) 26, 165, 373, 536, 821, 885
MfeI CAATTG 1 cut(s) 470
MluCI AATT 5 cut(s) 213, 470, 850, 861, 885
MlyI GAGTC 4 cut(s) 275, 437, 559, 630
MmeI TCCRAC 1 cut(s) 62
MnlI CCTC 5 cut(s) 223, 463, 579, 742, 805
MseI TTAA 3 cut(s) 351, 417, 711
MslI CAYNNNNRTG 1 cut(s) 551
MspI CCGG 1 cut(s) 746
MspR9I CCNGG 1 cut(s) 125
MunI CAATTG 1 cut(s) 470
MvaI CCWGG 1 cut(s) 125
MwoI GCNNNNNNNGC 8 cut(s) 61, 455, 484, 487, 586, 608, 635, 758
NcoI CCATGG 1 cut(s) 876
NdeII GATC 1 cut(s) 466
NlaIII CATG 3 cut(s) 611, 869, 880
NlaIV GGNNCC 2 cut(s) 129, 539
NmuCI GTSAC 1 cut(s) 428
OliI CACNNNNGTG 1 cut(s) 551
PceI AGGCCT 1 cut(s) 422
PciSI GCTCTTC 1 cut(s) 39
PfeI GAWTC 3 cut(s) 181, 239, 364
PkrI GCNGC 9 cut(s) 142, 460, 477, 480, 489, 637, 721, 744, 763
PleI GAGTC 4 cut(s) 274, 437, 559, 629
PpsI GAGTC 4 cut(s) 274, 437, 559, 629
PpuMI RGGWCCY 1 cut(s) 537
Psp5II RGGWCCY 1 cut(s) 537
Psp6I CCWGG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 123
PspN4I GGNNCC 2 cut(s) 129, 539
PspPI GGNCC 2 cut(s) 18, 537
PspPPI RGGWCCY 1 cut(s) 537
PstI CTGCAG 2 cut(s) 142, 724
PstNI CAGNNNCTG 1 cut(s) 203
RsaI GTAC 1 cut(s) 788
RsaNI GTAC 1 cut(s) 787
RseI CAYNNNNRTG 1 cut(s) 551
SapI GCTCTTC 1 cut(s) 39
SaqAI TTAA 3 cut(s) 351, 417, 711
SatI GCNGC 9 cut(s) 141, 459, 476, 479, 488, 636, 720, 743, 762
Sau3AI GATC 1 cut(s) 466
Sau96I GGNCC 2 cut(s) 18, 537
SchI GAGTC 4 cut(s) 275, 437, 559, 630
ScrFI CCNGG 1 cut(s) 125
SetI ASST 6 cut(s) 224, 261, 455, 591, 637, 655
SfaNI GCATC 1 cut(s) 142
SfcI CTRYAG 2 cut(s) 138, 720
SinI GGWCC 1 cut(s) 537
SmiMI CAYNNNNRTG 1 cut(s) 551
SmlI CTYRAG 1 cut(s) 501
SmoI CTYRAG 1 cut(s) 501
Sse9I AATT 5 cut(s) 213, 470, 850, 861, 885
SseBI AGGCCT 1 cut(s) 422
SsiI CCGC 1 cut(s) 761
SspMI CTAG 1 cut(s) 326
StuI AGGCCT 1 cut(s) 422
StyD4I CCNGG 1 cut(s) 123
StyI CCWWGG 1 cut(s) 876
TaaI ACNGT 2 cut(s) 434, 513
TaqI TCGA 1 cut(s) 24
TasI AATT 5 cut(s) 213, 470, 850, 861, 885
TatI WGTACW 1 cut(s) 786
TauI GCSGC 1 cut(s) 764
TfiI GAWTC 3 cut(s) 181, 239, 364
Tru1I TTAA 3 cut(s) 351, 417, 711
Tru9I TTAA 3 cut(s) 351, 417, 711
TseFI GTSAC 1 cut(s) 428
TseI GCWGC 8 cut(s) 140, 458, 475, 478, 487, 635, 719, 742
Tsp45I GTSAC 1 cut(s) 428
TspDTI ATGAA 5 cut(s) 132, 374, 698, 822, 854
TspGWI ACGGA 1 cut(s) 634
VpaK11BI GGWCC 1 cut(s) 537
XapI RAATTY 1 cut(s) 213
XbaI TCTAGA 1 cut(s) 325
XspI CTAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.