pycom13g14380

CLASP N terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0014024
Physical Location & Seq
Forward (+)
10379145 .. 10380488
1344 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g14380.3

Sequence Viewer

Length: 957 bp
ATGGCAATGGCTCTCAGACCCATCGACAATGCTCTCCCAACCACACCGGAAAGACCCAAAAAGCAAACCAAAGTTGCTGTTCCAATGCAAAAGCAGCAATCCGGCCTCGTAAATGACGAAAATCAGGCTCCGCTTCCTGCAACCGCGGATTCCGCCATCGATTACATCTCCTCTGAGAATCTCAAACCCTTCTCAGACCCGGATCTCAAGATCCAGAGCTTGAGTGAGGGATTGGAATCAAAGGATTGGGTGAAGGTGTGTGAGTCTCTGAACAATGTTAGGCGTTTTGCACTCCACCACTCTGCTCTTCTGGCTCCTACTCTAGAGAATGTTGTAGTGGTGCTGGTGAAGGCAATGAAGAATCCGAGAAGTGCCTTAATCAAGACCTCGATTATGGCTTCTTCCGACATCTTCACCGCCTTTGGTGATGGTTTACTTGACTCCGCAGCCTCTAATGCATTTGACCAATTGCTGCTGCAATTGCTGCTCAAGGCATCTCAAGACAAACGTTTTGTGTGTGAAGAAGCAGACAGGGCACTGAGCTCGATGGTGCAGTCCTTGACCCCTCTTCCTCTGCTTCAGAAGCTCCGAGCTTACGCTTCCCATGGCAACCCTAGAGTCAGAGCCAAAGCTGCCATTTCCATCGCATCTTGTGTCGCCAAGATGGGCCTTGAAGGAATGAAGGATTATGGGCTGGTTTCTCTGGTGCAAATGGCTGCAGATTTGTTGAATGATAGGCTGCCTGAGGCGAGAGAAGCAGCGCGGGGAATTGTAATGTCGGTATACAATGCCTATACAGAGAATGAAGCGGAGAAGCTGCGGGAGAATGAAGAGGAGAAGTTGCGGGAAAATGAAGAGGAGAAACCGGAGAAGCAGCAGATTTGGCTAAACTTTTGCCAGTCTAATTTGTCAACGATTCATGCTCAGTCCATGGTCAAAATTACTTCTTCTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLASP_N

Protein Analysis

319

Amino Acids

35.08

Weight (kDa)

5.93

Isoelectric Point (pI)

47.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014024)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15830
fragaria_vesca FvH4_4g18210
malus_domestica MD13G1168000.v1.1 MD16G1168400.v1.1
prunus_persica Prupe.1G135600_v2.0.a1
pyrus_communis pycom13g14380 pycom16g14180
rosa_chinensis RchiOBHm_Chr4g0422361
rosa_laevigata RLG00000007616
rosa_multiflora Rmu_co8367675.1_g000001 Rmu_sc0013245.1_g000010
rosa_roxburghii Rroxscaffold_5G00364480
rosa_rugosa Rorug04G0179400
rosa_samantha Rh4AG238800 Rh4BG242400 Rh4CG253900
rosa_wichuraiana Rw4G020650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 783
AccII CGCG 2 cut(s) 146, 763
AclI AACGTT 1 cut(s) 508
AclWI GGATC 2 cut(s) 205, 210
AcuI CTGAAG 1 cut(s) 563
AgsI TTSAA 2 cut(s) 674, 730
AluBI AGCT 6 cut(s) 219, 543, 586, 593, 632, 817
AluI AGCT 6 cut(s) 219, 543, 586, 593, 632, 817
Alw21I GWGCWC 1 cut(s) 545
Alw26I GTCTC 1 cut(s) 270
AlwI GGATC 2 cut(s) 205, 210
AoxI GGCC 2 cut(s) 103, 667
ArsI GACNNNNNNTTYG 2 cut(s) 494, 526
AspLEI GCGC 1 cut(s) 763
AspS9I GGNCC 1 cut(s) 667
AsuC2I CCSGG 1 cut(s) 200
AsuHPI GGTGA 4 cut(s) 262, 358, 406, 437
AxyI CCTNAGG 1 cut(s) 744
BaeGI GKGCMC 1 cut(s) 538
BanII GRGCYC 1 cut(s) 545
Bbv12I GWGCWC 1 cut(s) 545
BccI CCATC 6 cut(s) 29, 164, 422, 541, 650, 658
BcgI CGANNNNNNTGC 2 cut(s) 525, 559
BcnI CCSGG 1 cut(s) 200
BcoDI GTCTC 1 cut(s) 270
BfaI CTAG 2 cut(s) 323, 615
BfmI CTRYAG 1 cut(s) 717
Bme1390I CCNGG 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 667
BmiI GGNNCC 2 cut(s) 129, 315
BmrFI CCNGG 1 cut(s) 200
BmsI GCATC 2 cut(s) 503, 656
BpuEI CTTGAG 4 cut(s) 191, 241, 473, 483
BpuMI CCSGG 1 cut(s) 200
Bsa29I ATCGAT 1 cut(s) 159
BsaBI GATNNNNATC 1 cut(s) 235
BsaJI CCNNGG 3 cut(s) 144, 604, 930
BsaWI WCCGGW 2 cut(s) 46, 865
Bse1I ACTGG 1 cut(s) 898
Bse21I CCTNAGG 1 cut(s) 744
Bse3DI GCAATG 2 cut(s) 12, 360
Bse8I GATNNNNATC 1 cut(s) 235
BseCI ATCGAT 1 cut(s) 159
BseDI CCNNGG 3 cut(s) 144, 604, 930
BseJI GATNNNNATC 1 cut(s) 235
BseMI GCAATG 2 cut(s) 12, 360
BseMII CTCAG 6 cut(s) 28, 165, 207, 530, 735, 938
BseNI ACTGG 1 cut(s) 898
BseRI GAGGAG 3 cut(s) 160, 848, 872
BseSI GKGCMC 1 cut(s) 538
BsgI GTGCAG 1 cut(s) 572
Bsh1236I CGCG 2 cut(s) 146, 763
BshFI GGCC 2 cut(s) 105, 669
BshVI ATCGAT 1 cut(s) 159
BsiHKAI GWGCWC 1 cut(s) 545
BsiSI CCGG 4 cut(s) 47, 102, 200, 866
BsmAI GTCTC 1 cut(s) 270
BsnI GGCC 2 cut(s) 105, 669
Bsp1286I GDGCHC 2 cut(s) 538, 545
Bsp143I GATC 2 cut(s) 202, 210
Bsp19I CCATGG 2 cut(s) 604, 930
BspANI GGCC 2 cut(s) 105, 669
BspCNI CTCAG 6 cut(s) 27, 166, 206, 531, 736, 937
BspDI ATCGAT 1 cut(s) 159
BspFNI CGCG 2 cut(s) 146, 763
BspLI GGNNCC 2 cut(s) 129, 315
BspMAI CTGCAG 1 cut(s) 721
BspPI GGATC 2 cut(s) 205, 210
BspQI GCTCTTC 1 cut(s) 312
BsrDI GCAATG 2 cut(s) 12, 360
BsrI ACTGG 1 cut(s) 898
BssECI CCNNGG 3 cut(s) 144, 604, 930
BssMI GATC 2 cut(s) 202, 210
BssNAI GTATAC 1 cut(s) 784
BssT1I CCWWGG 2 cut(s) 604, 930
Bst1107I GTATAC 1 cut(s) 784
Bst6I CTCTTC 4 cut(s) 312, 573, 825, 849
BstAPI GCANNNNNTGC 1 cut(s) 484
BstDEI CTNAG 7 cut(s) 14, 174, 193, 539, 744, 924, 951
BstDSI CCRYGG 3 cut(s) 144, 604, 930
BstFNI CGCG 2 cut(s) 146, 763
BstHHI GCGC 1 cut(s) 763
BstKTI GATC 2 cut(s) 205, 213
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 2 cut(s) 202, 210
BstSCI CCNGG 1 cut(s) 198
BstSFI CTRYAG 1 cut(s) 717
BstSLI GKGCMC 1 cut(s) 538
BstUI CGCG 2 cut(s) 146, 763
BstX2I RGATCY 2 cut(s) 202, 210
BstYI RGATCY 2 cut(s) 202, 210
BstZ17I GTATAC 1 cut(s) 784
Bsu15I ATCGAT 1 cut(s) 159
Bsu36I CCTNAGG 1 cut(s) 744
BsuRI GGCC 2 cut(s) 105, 669
BsuTUI ATCGAT 1 cut(s) 159
BtgI CCRYGG 3 cut(s) 144, 604, 930
BtgZI GCGATG 1 cut(s) 628
BtsIMutI CAGTG 1 cut(s) 536
CfoI GCGC 1 cut(s) 763
Cfr13I GGNCC 1 cut(s) 667
Cfr42I CCGCGG 1 cut(s) 147
ClaI ATCGAT 1 cut(s) 159
CviAII CATG 3 cut(s) 605, 920, 931
DdeI CTNAG 7 cut(s) 14, 174, 193, 539, 744, 924, 951
DpnI GATC 2 cut(s) 204, 212
DpnII GATC 2 cut(s) 202, 210
Eam1104I CTCTTC 4 cut(s) 312, 573, 825, 849
EarI CTCTTC 4 cut(s) 312, 573, 825, 849
EciI GGCGGA 1 cut(s) 142
Ecl136II GAGCTC 1 cut(s) 543
Eco130I CCWWGG 2 cut(s) 604, 930
Eco24I GRGCYC 1 cut(s) 545
Eco53kI GAGCTC 1 cut(s) 543
Eco57I CTGAAG 1 cut(s) 563
Eco81I CCTNAGG 1 cut(s) 744
EcoICRI GAGCTC 1 cut(s) 543
EcoT14I CCWWGG 2 cut(s) 604, 930
EcoT22I ATGCAT 1 cut(s) 460
EcoT38I GRGCYC 1 cut(s) 545
ErhI CCWWGG 2 cut(s) 604, 930
FaeI CATG 3 cut(s) 608, 923, 934
FaiI YATR 7 cut(s) 395, 606, 690, 784, 795, 921, 932
FatI CATG 3 cut(s) 604, 919, 930
FauI CCCGC 3 cut(s) 756, 813, 837
FblI GTMKAC 1 cut(s) 783
FriOI GRGCYC 1 cut(s) 545
FspBI CTAG 2 cut(s) 323, 615
GlaI GCGC 1 cut(s) 762
HaeIII GGCC 2 cut(s) 105, 669
HapII CCGG 4 cut(s) 47, 102, 200, 866
HhaI GCGC 1 cut(s) 763
Hin1II CATG 3 cut(s) 608, 923, 934
Hin6I GCGC 1 cut(s) 761
HinP1I GCGC 1 cut(s) 761
HincII GTYRAC 1 cut(s) 912
HindII GTYRAC 1 cut(s) 912
HinfI GANTC 8 cut(s) 149, 178, 236, 263, 361, 440, 618, 916
HpaII CCGG 4 cut(s) 47, 102, 200, 866
HphI GGTGA 4 cut(s) 262, 358, 406, 437
Hpy166II GTNNAC 3 cut(s) 434, 784, 912
Hpy188I TCNGA 9 cut(s) 17, 175, 196, 270, 366, 406, 582, 590, 623
Hpy188III TCNNGA 5 cut(s) 208, 214, 323, 382, 500
Hpy8I GTNNAC 3 cut(s) 434, 784, 912
HpyAV CCTTC 5 cut(s) 199, 247, 343, 668, 676
HpyCH4IV ACGT 1 cut(s) 508
HpyCH4V TGCA 8 cut(s) 88, 140, 290, 458, 478, 553, 709, 719
HpyF3I CTNAG 7 cut(s) 14, 174, 193, 539, 744, 924, 951
HpySE526I ACGT 1 cut(s) 508
Hsp92II CATG 3 cut(s) 608, 923, 934
HspAI GCGC 1 cut(s) 761
KspI CCGCGG 1 cut(s) 147
Kzo9I GATC 2 cut(s) 202, 210
LguI GCTCTTC 1 cut(s) 312
LmnI GCTCC 3 cut(s) 133, 319, 591
LweI GCATC 2 cut(s) 503, 656
MaeI CTAG 2 cut(s) 323, 615
MaeII ACGT 1 cut(s) 508
MalI GATC 2 cut(s) 204, 212
MboI GATC 2 cut(s) 202, 210
MboII GAAGA 9 cut(s) 299, 370, 393, 403, 533, 560, 842, 866, 939
MfeI CAATTG 2 cut(s) 467, 479
MflI RGATCY 2 cut(s) 202, 210
MhlI GDGCHC 2 cut(s) 538, 545
MluCI AATT 5 cut(s) 467, 479, 768, 904, 939
MlyI GAGTC 3 cut(s) 272, 434, 627
MmeI TCCRAC 1 cut(s) 429
Mph1103I ATGCAT 1 cut(s) 460
MseI TTAA 1 cut(s) 377
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 4 cut(s) 47, 102, 200, 866
MspR9I CCNGG 1 cut(s) 200
MunI CAATTG 2 cut(s) 467, 479
MvnI CGCG 2 cut(s) 146, 763
NciI CCSGG 1 cut(s) 200
NcoI CCATGG 2 cut(s) 604, 930
NdeII GATC 2 cut(s) 202, 210
NlaIII CATG 3 cut(s) 608, 923, 934
NlaIV GGNNCC 2 cut(s) 129, 315
NsiI ATGCAT 1 cut(s) 460
PciSI GCTCTTC 1 cut(s) 312
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PfeI GAWTC 5 cut(s) 149, 178, 236, 361, 916
PleI GAGTC 3 cut(s) 271, 434, 626
PpsI GAGTC 3 cut(s) 271, 434, 626
Psp124BI GAGCTC 1 cut(s) 545
Psp1406I AACGTT 1 cut(s) 508
PspN4I GGNNCC 2 cut(s) 129, 315
PspPI GGNCC 1 cut(s) 667
PstI CTGCAG 1 cut(s) 721
PsuI RGATCY 2 cut(s) 202, 210
SacI GAGCTC 1 cut(s) 545
SacII CCGCGG 1 cut(s) 147
SapI GCTCTTC 1 cut(s) 312
SaqAI TTAA 1 cut(s) 377
Sau3AI GATC 2 cut(s) 202, 210
Sau96I GGNCC 1 cut(s) 667
SchI GAGTC 3 cut(s) 272, 434, 627
ScrFI CCNGG 1 cut(s) 200
SduI GDGCHC 2 cut(s) 538, 545
SetI ASST 9 cut(s) 221, 258, 389, 511, 545, 588, 595, 634, 819
SfaNI GCATC 2 cut(s) 503, 656
SfcI CTRYAG 1 cut(s) 717
Sfr303I CCGCGG 1 cut(s) 147
SgrBI CCGCGG 1 cut(s) 147
SmlI CTYRAG 4 cut(s) 206, 220, 488, 498
SmoI CTYRAG 4 cut(s) 206, 220, 488, 498
Sse9I AATT 5 cut(s) 467, 479, 768, 904, 939
SspMI CTAG 2 cut(s) 323, 615
SstI GAGCTC 1 cut(s) 545
StyD4I CCNGG 1 cut(s) 198
StyI CCWWGG 2 cut(s) 604, 930
TaiI ACGT 1 cut(s) 511
TaqI TCGA 4 cut(s) 24, 159, 389, 545
TasI AATT 5 cut(s) 467, 479, 768, 904, 939
TfiI GAWTC 5 cut(s) 149, 178, 236, 361, 916
Tru1I TTAA 1 cut(s) 377
Tru9I TTAA 1 cut(s) 377
TscAI CASTG 1 cut(s) 543
TspDTI ATGAA 6 cut(s) 371, 695, 819, 843, 867, 908
TspRI CASTG 1 cut(s) 543
XbaI TCTAGA 1 cut(s) 322
XmiI GTMKAC 1 cut(s) 783
XspI CTAG 2 cut(s) 323, 615
Zsp2I ATGCAT 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.