MD16G1168400.v1.1

CLASP N terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0014024
Physical Location & Seq
Forward (+)
14020643 .. 14022360
1718 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1168400.v1.1.491

Sequence Viewer

Length: 939 bp
ATGGCTATGGCTCTCAGACCCATCGACAATGCTCTCCCAACCACACCGGAAAGACCCAAAAAGCAAACCAAAGTTGCTGTTCCAATCCAGAAGCAGAAACCTGAATTCGGCCTCATAAATGACGAAAACCAGGCTCCGCTTCCTGCAACCGCTGATGCCGCCATCGACTACATCTCTTCCGAGAATCTCAAACCCATCTCAGACCCTGATCTCAAGATTCAGAGCTTGAATGAGGGATTGGAATCAAAGGATTGGGTGAAGGTGTGTGAGTCTCTGAACAATGTCAGGCGTTTTGCACTCTACCACTCTGCCCTTCTGGCTCCTACTCTAGAAAAAGTTATGGTGGTGCTGGTCAAGGCAATGAAGAATCCGAGAAGTGCCTTAATCAAGACCTCGATTATGGCTTCTTCCGACATCTTCACCGCCTTTGGCGATGGTTTACTTGAGTCCGCGGCCTCTAATGCATTTGATCAATTGCTGCTGCAATTGCTGTTGAAGTCATCTCAAGACAAACGTTTTGTGTGTGAAGAAGCAGACAGGGCACTGAGCTCCATGGTGCAGTCCTTGACCCCTCTTCCTCTGCTTCAGAAGCTTCGAGCCTACGCTTCCCATGGCAACCCTAGAGTCAGAGCCAAAGCTGCCATTTCCGTCGCATCTTGCGTCGCCAAGATGGGGCTTGAAGGAATGAAGGATTATGGGGTGGTTTCTTTGGTGAAAATGGCTGCAGATTTGTTGAATGATAGGCTGCCTGAGGCGAGAGAAGCAGCGCGGGGAATTGTGATGTCGGTATACAATGCCTATACAGAGAATGAAGAGGAGAAGCTGCGGGAGAATGAAGAGGAGAAGCCAGAGAAGCAGGAGATTTGGCTAAGCTTTTGCCAGTCTAATTTGTCAACAATCCATGCGCAGTCCATGGTCAAAATTACTTCTTCTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLASP_N

Protein Analysis

313

Amino Acids

34.42

Weight (kDa)

6.38

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLASP_N PF12348 112 - 275 1.3e-06 CLASP N terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014024)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15830
fragaria_vesca FvH4_4g18210
malus_domestica MD13G1168000.v1.1 MD16G1168400.v1.1
prunus_persica Prupe.1G135600_v2.0.a1
pyrus_communis pycom13g14380 pycom16g14180
rosa_chinensis RchiOBHm_Chr4g0422361
rosa_laevigata RLG00000007616
rosa_multiflora Rmu_co8367675.1_g000001 Rmu_sc0013245.1_g000010
rosa_roxburghii Rroxscaffold_5G00364480
rosa_rugosa Rorug04G0179400
rosa_samantha Rh4AG238800 Rh4BG242400 Rh4CG253900
rosa_wichuraiana Rw4G020650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 906
AccI GTMKAC 1 cut(s) 789
AccII CGCG 2 cut(s) 452, 769
AciI CCGC 8 cut(s) 137, 150, 159, 423, 450, 452, 769, 826
AclI AACGTT 1 cut(s) 514
AcsI RAATTY 1 cut(s) 104
AcuI CTGAAG 1 cut(s) 569
AfiI CCNNNNNNNGG 2 cut(s) 107, 672
AgsI TTSAA 4 cut(s) 229, 496, 680, 736
AjnI CCWGG 1 cut(s) 129
AjuI GAANNNNNNNTTGG 2 cut(s) 221, 253
AluBI AGCT 6 cut(s) 225, 549, 592, 638, 823, 873
AluI AGCT 6 cut(s) 225, 549, 592, 638, 823, 873
Alw21I GWGCWC 1 cut(s) 551
Alw26I GTCTC 1 cut(s) 276
AlwNI CAGNNNCTG 1 cut(s) 206
AoxI GGCC 2 cut(s) 109, 453
ApeKI GCWGC 7 cut(s) 478, 481, 638, 722, 745, 764, 823
ApoI RAATTY 1 cut(s) 104
ArsI GACNNNNNNTTYG 2 cut(s) 500, 532
AspLEI GCGC 2 cut(s) 769, 907
AsuHPI GGTGA 3 cut(s) 268, 412, 724
AxyI CCTNAGG 1 cut(s) 750
BaeGI GKGCMC 1 cut(s) 544
BanII GRGCYC 1 cut(s) 551
Bbv12I GWGCWC 1 cut(s) 551
BbvI GCAGC 7 cut(s) 465, 468, 625, 709, 732, 776, 810
BccI CCATC 5 cut(s) 29, 170, 203, 428, 664
BciT130I CCWGG 1 cut(s) 131
BclI TGATCA 1 cut(s) 469
BcoDI GTCTC 1 cut(s) 276
BfaI CTAG 2 cut(s) 329, 621
BfmI CTRYAG 1 cut(s) 723
BglI GCCNNNNNGGC 1 cut(s) 317
BisI GCNGC 9 cut(s) 159, 453, 479, 482, 639, 723, 746, 765, 824
BlpI GCTNAGC 1 cut(s) 869
BlsI GCNGC 9 cut(s) 160, 454, 480, 483, 640, 724, 747, 766, 825
Bme1390I CCNGG 1 cut(s) 131
BmiI GGNNCC 2 cut(s) 135, 321
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 2 cut(s) 145, 662
Bpu1102I GCTNAGC 1 cut(s) 869
BpuEI CTTGAG 3 cut(s) 197, 464, 489
BsaBI GATNNNNATC 1 cut(s) 241
BsaJI CCNNGG 4 cut(s) 450, 552, 610, 912
BsaWI WCCGGW 1 cut(s) 46
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 672
Bse1I ACTGG 1 cut(s) 880
Bse21I CCTNAGG 1 cut(s) 750
Bse3DI GCAATG 1 cut(s) 366
Bse8I GATNNNNATC 1 cut(s) 241
BseBI CCWGG 1 cut(s) 131
BseDI CCNNGG 4 cut(s) 450, 552, 610, 912
BseJI GATNNNNATC 1 cut(s) 241
BseLI CCNNNNNNNGG 2 cut(s) 107, 672
BseMI GCAATG 1 cut(s) 366
BseMII CTCAG 4 cut(s) 28, 213, 536, 741
BseNI ACTGG 1 cut(s) 880
BseRI GAGGAG 2 cut(s) 830, 854
BseSI GKGCMC 1 cut(s) 544
BseXI GCAGC 7 cut(s) 465, 468, 625, 709, 732, 776, 810
BsgI GTGCAG 1 cut(s) 578
Bsh1236I CGCG 2 cut(s) 452, 769
BshFI GGCC 2 cut(s) 111, 455
BsiHKAI GWGCWC 1 cut(s) 551
BsiSI CCGG 1 cut(s) 47
BslI CCNNNNNNNGG 2 cut(s) 107, 672
BsmAI GTCTC 1 cut(s) 276
BsnI GGCC 2 cut(s) 111, 455
Bsp1286I GDGCHC 2 cut(s) 544, 551
Bsp143I GATC 2 cut(s) 208, 469
Bsp1720I GCTNAGC 1 cut(s) 869
Bsp19I CCATGG 3 cut(s) 552, 610, 912
BspACI CCGC 8 cut(s) 137, 150, 159, 423, 450, 452, 769, 826
BspANI GGCC 2 cut(s) 111, 455
BspCNI CTCAG 4 cut(s) 27, 212, 537, 742
BspFNI CGCG 2 cut(s) 452, 769
BspLI GGNNCC 2 cut(s) 135, 321
BspMAI CTGCAG 1 cut(s) 727
BsrDI GCAATG 1 cut(s) 366
BsrI ACTGG 1 cut(s) 880
BssECI CCNNGG 4 cut(s) 450, 552, 610, 912
BssMI GATC 2 cut(s) 208, 469
BssNAI GTATAC 1 cut(s) 790
BssT1I CCWWGG 3 cut(s) 552, 610, 912
Bst1107I GTATAC 1 cut(s) 790
Bst2UI CCWGG 1 cut(s) 131
Bst6I CTCTTC 4 cut(s) 181, 579, 807, 831
BstDEI CTNAG 6 cut(s) 14, 199, 545, 750, 869, 933
BstDSI CCRYGG 4 cut(s) 450, 552, 610, 912
BstFNI CGCG 2 cut(s) 452, 769
BstHHI GCGC 2 cut(s) 769, 907
BstKTI GATC 2 cut(s) 211, 472
BstMAI GTCTC 1 cut(s) 276
BstMBI GATC 2 cut(s) 208, 469
BstMWI GCNNNNNNNGC 9 cut(s) 158, 317, 461, 487, 539, 589, 638, 761, 853
BstNI CCWGG 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 129
BstSFI CTRYAG 1 cut(s) 723
BstSLI GKGCMC 1 cut(s) 544
BstUI CGCG 2 cut(s) 452, 769
BstV1I GCAGC 7 cut(s) 465, 468, 625, 709, 732, 776, 810
BstZ17I GTATAC 1 cut(s) 790
Bsu36I CCTNAGG 1 cut(s) 750
BsuRI GGCC 2 cut(s) 111, 455
BtgI CCRYGG 4 cut(s) 450, 552, 610, 912
BtgZI GCGATG 1 cut(s) 447
BtsIMutI CAGTG 1 cut(s) 542
CaiI CAGNNNCTG 1 cut(s) 206
CfoI GCGC 2 cut(s) 769, 907
Cfr42I CCGCGG 1 cut(s) 453
CseI GACGC 1 cut(s) 649
CviAII CATG 4 cut(s) 553, 611, 902, 913
DdeI CTNAG 6 cut(s) 14, 199, 545, 750, 869, 933
DpnI GATC 2 cut(s) 210, 471
DpnII GATC 2 cut(s) 208, 469
Eam1104I CTCTTC 4 cut(s) 181, 579, 807, 831
EarI CTCTTC 4 cut(s) 181, 579, 807, 831
Ecl136II GAGCTC 1 cut(s) 549
Eco130I CCWWGG 3 cut(s) 552, 610, 912
Eco24I GRGCYC 1 cut(s) 551
Eco53kI GAGCTC 1 cut(s) 549
Eco57I CTGAAG 1 cut(s) 569
Eco81I CCTNAGG 1 cut(s) 750
EcoICRI GAGCTC 1 cut(s) 549
EcoRI GAATTC 1 cut(s) 104
EcoRII CCWGG 1 cut(s) 129
EcoT14I CCWWGG 3 cut(s) 552, 610, 912
EcoT22I ATGCAT 1 cut(s) 466
EcoT38I GRGCYC 1 cut(s) 551
ErhI CCWWGG 3 cut(s) 552, 610, 912
FaeI CATG 4 cut(s) 556, 614, 905, 916
FatI CATG 4 cut(s) 552, 610, 901, 912
FauI CCCGC 2 cut(s) 762, 819
FbaI TGATCA 1 cut(s) 469
FblI GTMKAC 1 cut(s) 789
Fnu4HI GCNGC 9 cut(s) 159, 453, 479, 482, 639, 723, 746, 765, 824
FriOI GRGCYC 1 cut(s) 551
Fsp4HI GCNGC 9 cut(s) 159, 453, 479, 482, 639, 723, 746, 765, 824
FspBI CTAG 2 cut(s) 329, 621
FspI TGCGCA 1 cut(s) 906
GlaI GCGC 2 cut(s) 768, 906
GluI GCNGC 9 cut(s) 159, 453, 479, 482, 639, 723, 746, 765, 824
HaeIII GGCC 2 cut(s) 111, 455
HapII CCGG 1 cut(s) 47
HgaI GACGC 1 cut(s) 649
HhaI GCGC 2 cut(s) 769, 907
Hin1II CATG 4 cut(s) 556, 614, 905, 916
Hin6I GCGC 2 cut(s) 767, 905
HinP1I GCGC 2 cut(s) 767, 905
HincII GTYRAC 1 cut(s) 894
HindII GTYRAC 1 cut(s) 894
HindIII AAGCTT 2 cut(s) 590, 871
HinfI GANTC 7 cut(s) 184, 217, 242, 269, 367, 446, 624
HpaII CCGG 1 cut(s) 47
HphI GGTGA 3 cut(s) 268, 412, 724
Hpy166II GTNNAC 3 cut(s) 440, 790, 894
Hpy188I TCNGA 9 cut(s) 17, 181, 202, 222, 276, 372, 412, 588, 629
Hpy188III TCNNGA 5 cut(s) 88, 214, 329, 388, 506
Hpy8I GTNNAC 3 cut(s) 440, 790, 894
Hpy99I CGWCG 2 cut(s) 653, 665
HpyAV CCTTC 4 cut(s) 253, 323, 674, 682
HpyCH4IV ACGT 1 cut(s) 514
HpyCH4V TGCA 6 cut(s) 146, 296, 464, 484, 559, 725
HpyF10VI GCNNNNNNNGC 9 cut(s) 158, 317, 461, 487, 539, 589, 638, 761, 853
HpyF3I CTNAG 6 cut(s) 14, 199, 545, 750, 869, 933
HpySE526I ACGT 1 cut(s) 514
Hsp92II CATG 4 cut(s) 556, 614, 905, 916
HspAI GCGC 2 cut(s) 767, 905
Ksp22I TGATCA 1 cut(s) 469
KspI CCGCGG 1 cut(s) 453
Kzo9I GATC 2 cut(s) 208, 469
LmnI GCTCC 3 cut(s) 139, 325, 554
Lsp1109I GCAGC 7 cut(s) 465, 468, 625, 709, 732, 776, 810
LweI GCATC 2 cut(s) 145, 662
MaeI CTAG 2 cut(s) 329, 621
MaeII ACGT 1 cut(s) 514
MalI GATC 2 cut(s) 210, 471
MboI GATC 2 cut(s) 208, 469
MboII GAAGA 9 cut(s) 168, 376, 399, 409, 539, 566, 824, 848, 921
MfeI CAATTG 2 cut(s) 473, 485
MhlI GDGCHC 2 cut(s) 544, 551
MluCI AATT 6 cut(s) 104, 473, 485, 774, 886, 921
MlyI GAGTC 3 cut(s) 278, 455, 633
MmeI TCCRAC 1 cut(s) 435
MnlI CCTC 9 cut(s) 122, 226, 403, 466, 582, 588, 745, 808, 832
Mph1103I ATGCAT 1 cut(s) 466
MseI TTAA 1 cut(s) 383
MspA1I CMGCKG 2 cut(s) 152, 452
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 1 cut(s) 131
MunI CAATTG 2 cut(s) 473, 485
MvaI CCWGG 1 cut(s) 131
MvnI CGCG 2 cut(s) 452, 769
MwoI GCNNNNNNNGC 9 cut(s) 158, 317, 461, 487, 539, 589, 638, 761, 853
NcoI CCATGG 3 cut(s) 552, 610, 912
NdeII GATC 2 cut(s) 208, 469
NlaIII CATG 4 cut(s) 556, 614, 905, 916
NlaIV GGNNCC 2 cut(s) 135, 321
NsbI TGCGCA 1 cut(s) 906
NsiI ATGCAT 1 cut(s) 466
PcsI WCGNNNNNNNCGW 1 cut(s) 657
PfeI GAWTC 4 cut(s) 184, 217, 242, 367
PkrI GCNGC 9 cut(s) 160, 454, 480, 483, 640, 724, 747, 766, 825
PleI GAGTC 3 cut(s) 277, 454, 632
PpsI GAGTC 3 cut(s) 277, 454, 632
Psp124BI GAGCTC 1 cut(s) 551
Psp1406I AACGTT 1 cut(s) 514
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
PspN4I GGNNCC 2 cut(s) 135, 321
PstI CTGCAG 1 cut(s) 727
PstNI CAGNNNCTG 1 cut(s) 206
SacI GAGCTC 1 cut(s) 551
SacII CCGCGG 1 cut(s) 453
SaqAI TTAA 1 cut(s) 383
SatI GCNGC 9 cut(s) 159, 453, 479, 482, 639, 723, 746, 765, 824
Sau3AI GATC 2 cut(s) 208, 469
SchI GAGTC 3 cut(s) 278, 455, 633
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 2 cut(s) 544, 551
SfaNI GCATC 2 cut(s) 145, 662
SfcI CTRYAG 1 cut(s) 723
Sfr303I CCGCGG 1 cut(s) 453
SgrBI CCGCGG 1 cut(s) 453
SmlI CTYRAG 3 cut(s) 212, 443, 504
SmoI CTYRAG 3 cut(s) 212, 443, 504
Sse9I AATT 6 cut(s) 104, 473, 485, 774, 886, 921
SsiI CCGC 8 cut(s) 137, 150, 159, 423, 450, 452, 769, 826
SspMI CTAG 2 cut(s) 329, 621
SstI GAGCTC 1 cut(s) 551
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 3 cut(s) 552, 610, 912
TaiI ACGT 1 cut(s) 517
TaqI TCGA 4 cut(s) 24, 165, 395, 595
TasI AATT 6 cut(s) 104, 473, 485, 774, 886, 921
TauI GCSGC 2 cut(s) 161, 455
TfiI GAWTC 4 cut(s) 184, 217, 242, 367
Tru1I TTAA 1 cut(s) 383
Tru9I TTAA 1 cut(s) 383
TscAI CASTG 1 cut(s) 549
TseI GCWGC 7 cut(s) 478, 481, 638, 722, 745, 764, 823
TspDTI ATGAA 4 cut(s) 377, 701, 825, 849
TspGWI ACGGA 1 cut(s) 637
TspRI CASTG 1 cut(s) 549
XapI RAATTY 1 cut(s) 104
XbaI TCTAGA 1 cut(s) 328
XmiI GTMKAC 1 cut(s) 789
XspI CTAG 2 cut(s) 329, 621
Zsp2I ATGCAT 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.