RLG00000007616

CLASP N terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0014024
Physical Location & Seq
Forward (+)
19044391 .. 19045666
1276 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007616

Sequence Viewer

Length: 897 bp
ATGGCACTCAGACCCATCGACAATGCTCTCCCAATTACACCGGAAAGACCCAAGAAGCCAACCAAAGTTGCTCTTCCGATTCAAAATCAATCTGATTTGGGCGTAAATGATGAGAACAAGGCTCCACTTCCGGCGGCAACCGCTGAAGCCACCATTGACTATATCTCCTCTGAGAATCTCAAACCCATTTCAGACCCTGATTCCAAGATTCAGAGCTTGATTGAAGGACTGGATTCAAAGGATTGGACCAAAGTGTGTGAGGCCCTGAACAATGCTAGGCGTTTTGCTCTCTTTCACTCTGCTCTTTTGGTGCCTACTCTAGAGAAAGTGATGGTGGTACTTGTTAAGTCTATGAAGAATCCGAGGAGTGCTCTGATAAAGACCTCCATCATGGCTTCGGCCGATATCTTCAATGCCTTTGGTGACAGTTTGCTTGACTCCACCACCTCTGATGCATTTGACCAATTGCTGCTGCAATTGCTGCTGAAAGCCTCACAAGACAAGAGGTTTGTTTGTGAAGAAGCAGACAAGGCGCTAAGCGCAATGGTGAAGTCTTTGGCTCCTCTGCCTCTGCTTCATAGGCTTAAAGCCTATGTCACCCATGCCCACCTCAAAGTCAGAGCCAAAGCTGCCATTTCCATCTCAACTTGTGTCTCTAAGATGGGGCTGGAAGGAATGAAAGATTATGGACTGGTTGCTCTGGTTAAAATGGCTGCGGATTCGCTGAATGATAGGCTGCCTGAGGCAAGAGAAGCGGCAAGGAGTATTGTGACTTCGGTGTACAATGCCTATACTGAGAATGAAGAGGAGAAGCAGGAGATATGGCTGAGCTTTTGCGAATCTAATTTGACACCAATTCATGCTCATGCCATGGTCAAGTTTACTTCTTCTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLASP_N

Protein Analysis

299

Amino Acids

32.69

Weight (kDa)

6.61

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014024)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15830
fragaria_vesca FvH4_4g18210
malus_domestica MD13G1168000.v1.1 MD16G1168400.v1.1
prunus_persica Prupe.1G135600_v2.0.a1
pyrus_communis pycom13g14380 pycom16g14180
rosa_chinensis RchiOBHm_Chr4g0422361
rosa_laevigata RLG00000007616
rosa_multiflora Rmu_co8367675.1_g000001 Rmu_sc0013245.1_g000010
rosa_roxburghii Rroxscaffold_5G00364480
rosa_rugosa Rorug04G0179400
rosa_samantha Rh4AG238800 Rh4BG242400 Rh4CG253900
rosa_wichuraiana Rw4G020650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 310
AciI CCGC 4 cut(s) 134, 141, 716, 755
AcoI YGGCCR 1 cut(s) 399
AcuI CTGAAG 1 cut(s) 165
AfaI GTAC 2 cut(s) 339, 782
AgsI TTSAA 4 cut(s) 83, 224, 237, 412
AluBI AGCT 3 cut(s) 216, 629, 831
AluI AGCT 3 cut(s) 216, 629, 831
Alw21I GWGCWC 1 cut(s) 373
Alw26I GTCTC 1 cut(s) 658
AlwNI CAGNNNCTG 1 cut(s) 197
AoxI GGCC 2 cut(s) 261, 399
ApeKI GCWGC 6 cut(s) 469, 472, 481, 629, 713, 736
ArsI GACNNNNNNTTYG 2 cut(s) 491, 523
AspLEI GCGC 2 cut(s) 535, 542
AspS9I GGNCC 2 cut(s) 246, 262
AsuHPI GGTGA 3 cut(s) 434, 559, 589
AvaII GGWCC 1 cut(s) 246
AxyI CCTNAGG 1 cut(s) 741
BanI GGYRCC 1 cut(s) 310
BarI GAAGNNNNNNTAC 2 cut(s) 757, 789
Bbv12I GWGCWC 1 cut(s) 373
BbvI GCAGC 6 cut(s) 456, 459, 468, 616, 700, 723
BccI CCATC 5 cut(s) 23, 325, 395, 647, 655
BcoDI GTCTC 1 cut(s) 658
BfaI CTAG 2 cut(s) 276, 320
BfoI RGCGCY 1 cut(s) 536
BisI GCNGC 8 cut(s) 135, 470, 473, 482, 630, 714, 737, 756
BlpI GCTNAGC 2 cut(s) 536, 827
BlsI GCNGC 8 cut(s) 136, 471, 474, 483, 631, 715, 738, 757
Bme18I GGWCC 1 cut(s) 246
BmgT120I GGNCC 2 cut(s) 246, 262
BmiI GGNNCC 3 cut(s) 123, 312, 561
BmsI GCATC 1 cut(s) 442
BplI GAGNNNNNCTC 2 cut(s) 355, 387
Bpu1102I GCTNAGC 2 cut(s) 536, 827
BsaJI CCNNGG 2 cut(s) 362, 870
BsaWI WCCGGW 1 cut(s) 40
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bse1I ACTGG 2 cut(s) 234, 696
Bse21I CCTNAGG 1 cut(s) 741
Bse3DI GCAATG 1 cut(s) 549
BseDI CCNNGG 2 cut(s) 362, 870
BseMI GCAATG 1 cut(s) 549
BseMII CTCAG 5 cut(s) 22, 162, 732, 786, 818
BseNI ACTGG 2 cut(s) 234, 696
BseRI GAGGAG 4 cut(s) 157, 379, 552, 821
BseX3I CGGCCG 1 cut(s) 399
BseXI GCAGC 6 cut(s) 456, 459, 468, 616, 700, 723
Bsh1285I CGRYCG 1 cut(s) 402
BshFI GGCC 2 cut(s) 263, 401
BshNI GGYRCC 1 cut(s) 310
BsiEI CGRYCG 1 cut(s) 402
BsiHKAI GWGCWC 1 cut(s) 373
BsiSI CCGG 2 cut(s) 41, 131
BsmAI GTCTC 1 cut(s) 658
BsnI GGCC 2 cut(s) 263, 401
Bsp1286I GDGCHC 1 cut(s) 373
Bsp1407I TGTACA 1 cut(s) 780
Bsp1720I GCTNAGC 2 cut(s) 536, 827
Bsp19I CCATGG 1 cut(s) 870
BspACI CCGC 4 cut(s) 134, 141, 716, 755
BspANI GGCC 2 cut(s) 263, 401
BspCNI CTCAG 5 cut(s) 21, 163, 733, 787, 819
BspLI GGNNCC 3 cut(s) 123, 312, 561
BspQI GCTCTTC 1 cut(s) 78
BspT107I GGYRCC 1 cut(s) 310
BsrDI GCAATG 1 cut(s) 549
BsrGI TGTACA 1 cut(s) 780
BsrI ACTGG 2 cut(s) 234, 696
BssECI CCNNGG 2 cut(s) 362, 870
BssT1I CCWWGG 1 cut(s) 870
Bst4CI ACNGT 1 cut(s) 428
Bst6I CTCTTC 2 cut(s) 78, 798
BstAPI GCANNNNNTGC 1 cut(s) 481
BstAUI TGTACA 1 cut(s) 780
BstDEI CTNAG 8 cut(s) 8, 171, 536, 657, 741, 795, 827, 891
BstDSI CCRYGG 1 cut(s) 870
BstH2I RGCGCY 1 cut(s) 536
BstHHI GCGC 2 cut(s) 535, 542
BstMAI GTCTC 1 cut(s) 658
BstMCI CGRYCG 1 cut(s) 402
BstMWI GCNNNNNNNGC 8 cut(s) 140, 478, 481, 530, 539, 580, 629, 752
BstV1I GCAGC 6 cut(s) 456, 459, 468, 616, 700, 723
BstZI CGGCCG 1 cut(s) 399
Bsu36I CCTNAGG 1 cut(s) 741
BsuRI GGCC 2 cut(s) 263, 401
BtgI CCRYGG 1 cut(s) 870
CaiI CAGNNNCTG 1 cut(s) 197
CfoI GCGC 2 cut(s) 535, 542
Cfr13I GGNCC 2 cut(s) 246, 262
Csp6I GTAC 2 cut(s) 338, 781
CviAII CATG 5 cut(s) 391, 602, 860, 866, 871
CviQI GTAC 2 cut(s) 338, 781
DdeI CTNAG 8 cut(s) 8, 171, 536, 657, 741, 795, 827, 891
EaeI YGGCCR 1 cut(s) 399
EagI CGGCCG 1 cut(s) 399
Eam1104I CTCTTC 2 cut(s) 78, 798
EarI CTCTTC 2 cut(s) 78, 798
EclXI CGGCCG 1 cut(s) 399
Eco130I CCWWGG 1 cut(s) 870
Eco32I GATATC 1 cut(s) 406
Eco47I GGWCC 1 cut(s) 246
Eco52I CGGCCG 1 cut(s) 399
Eco57I CTGAAG 1 cut(s) 165
Eco81I CCTNAGG 1 cut(s) 741
EcoO109I RGGNCCY 1 cut(s) 262
EcoRV GATATC 1 cut(s) 406
EcoT14I CCWWGG 1 cut(s) 870
EcoT22I ATGCAT 1 cut(s) 457
ErhI CCWWGG 1 cut(s) 870
FaeI CATG 5 cut(s) 394, 605, 863, 869, 874
FalI AAGNNNNNCTT 2 cut(s) 57, 89
FatI CATG 5 cut(s) 390, 601, 859, 865, 870
Fnu4HI GCNGC 8 cut(s) 135, 470, 473, 482, 630, 714, 737, 756
Fsp4HI GCNGC 8 cut(s) 135, 470, 473, 482, 630, 714, 737, 756
FspBI CTAG 2 cut(s) 276, 320
GlaI GCGC 2 cut(s) 534, 541
GluI GCNGC 8 cut(s) 135, 470, 473, 482, 630, 714, 737, 756
HaeII RGCGCY 1 cut(s) 536
HaeIII GGCC 2 cut(s) 263, 401
HapII CCGG 2 cut(s) 41, 131
HhaI GCGC 2 cut(s) 535, 542
Hin1II CATG 5 cut(s) 394, 605, 863, 869, 874
Hin6I GCGC 2 cut(s) 533, 540
HinP1I GCGC 2 cut(s) 533, 540
HinfI GANTC 9 cut(s) 79, 175, 200, 208, 233, 358, 437, 719, 839
HpaII CCGG 2 cut(s) 41, 131
HphI GGTGA 3 cut(s) 434, 559, 589
Hpy166II GTNNAC 2 cut(s) 781, 882
Hpy188III TCNNGA 1 cut(s) 320
Hpy8I GTNNAC 2 cut(s) 781, 882
HpyAV CCTTC 2 cut(s) 218, 665
HpyCH4III ACNGT 1 cut(s) 428
HpyCH4V TGCA 2 cut(s) 455, 475
HpyF10VI GCNNNNNNNGC 8 cut(s) 140, 478, 481, 530, 539, 580, 629, 752
HpyF3I CTNAG 8 cut(s) 8, 171, 536, 657, 741, 795, 827, 891
Hsp92II CATG 5 cut(s) 394, 605, 863, 869, 874
HspAI GCGC 2 cut(s) 533, 540
LguI GCTCTTC 1 cut(s) 78
LmnI GCTCC 2 cut(s) 127, 565
Lsp1109I GCAGC 6 cut(s) 456, 459, 468, 616, 700, 723
LweI GCATC 1 cut(s) 442
MaeI CTAG 2 cut(s) 276, 320
MaeIII GTNAC 3 cut(s) 422, 595, 769
MboII GAAGA 6 cut(s) 65, 367, 400, 530, 815, 879
MfeI CAATTG 2 cut(s) 464, 476
MhlI GDGCHC 1 cut(s) 373
MluCI AATT 5 cut(s) 33, 464, 476, 844, 855
MlyI GAGTC 1 cut(s) 431
Mph1103I ATGCAT 1 cut(s) 457
MseI TTAA 3 cut(s) 345, 585, 705
MslI CAYNNNNRTG 1 cut(s) 864
MspA1I CMGCKG 1 cut(s) 143
MspI CCGG 2 cut(s) 41, 131
MunI CAATTG 2 cut(s) 464, 476
MwoI GCNNNNNNNGC 8 cut(s) 140, 478, 481, 530, 539, 580, 629, 752
NcoI CCATGG 1 cut(s) 870
NlaIII CATG 5 cut(s) 394, 605, 863, 869, 874
NlaIV GGNNCC 3 cut(s) 123, 312, 561
NmuCI GTSAC 3 cut(s) 422, 595, 769
NsiI ATGCAT 1 cut(s) 457
PciSI GCTCTTC 1 cut(s) 78
PfeI GAWTC 8 cut(s) 79, 175, 200, 208, 233, 358, 719, 839
PkrI GCNGC 8 cut(s) 136, 471, 474, 483, 631, 715, 738, 757
PleI GAGTC 1 cut(s) 431
PpsI GAGTC 1 cut(s) 431
PspN4I GGNNCC 3 cut(s) 123, 312, 561
PspPI GGNCC 2 cut(s) 246, 262
PstNI CAGNNNCTG 1 cut(s) 197
RsaI GTAC 2 cut(s) 339, 782
RsaNI GTAC 2 cut(s) 338, 781
RseI CAYNNNNRTG 1 cut(s) 864
SapI GCTCTTC 1 cut(s) 78
SaqAI TTAA 3 cut(s) 345, 585, 705
SatI GCNGC 8 cut(s) 135, 470, 473, 482, 630, 714, 737, 756
Sau96I GGNCC 2 cut(s) 246, 262
SchI GAGTC 1 cut(s) 431
SduI GDGCHC 1 cut(s) 373
SetI ASST 7 cut(s) 218, 386, 449, 509, 612, 631, 833
SfaNI GCATC 1 cut(s) 442
SinI GGWCC 1 cut(s) 246
SmiMI CAYNNNNRTG 1 cut(s) 864
Sse9I AATT 5 cut(s) 33, 464, 476, 844, 855
SsiI CCGC 4 cut(s) 134, 141, 716, 755
SspMI CTAG 2 cut(s) 276, 320
StyI CCWWGG 1 cut(s) 870
TaaI ACNGT 1 cut(s) 428
TaqI TCGA 1 cut(s) 18
TasI AATT 5 cut(s) 33, 464, 476, 844, 855
TatI WGTACW 1 cut(s) 780
TauI GCSGC 2 cut(s) 137, 758
TfiI GAWTC 8 cut(s) 79, 175, 200, 208, 233, 358, 719, 839
Tru1I TTAA 3 cut(s) 345, 585, 705
Tru9I TTAA 3 cut(s) 345, 585, 705
TseFI GTSAC 3 cut(s) 422, 595, 769
TseI GCWGC 6 cut(s) 469, 472, 481, 629, 713, 736
Tsp45I GTSAC 3 cut(s) 422, 595, 769
TspDTI ATGAA 5 cut(s) 368, 566, 692, 816, 848
VpaK11BI GGWCC 1 cut(s) 246
XbaI TCTAGA 1 cut(s) 319
XspI CTAG 2 cut(s) 276, 320
Zsp2I ATGCAT 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.