RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G15850 |
| fragaria_vesca | FvH4_3g05121 FvH4_3g05121 |
| malus_domestica | MD05G1280500.v1.1 |
| prunus_persica | Prupe.4G084900_v2.0.a1 Prupe.4G084900_v2.0.a1 Prupe.4G084900_v2.0.a1 Prupe.4G084900_v2.0.a1 |
| pyrus_communis | pycom05g26080 |
| rosa_chinensis | RchiOBHm_Chr5g0014641 |
| rosa_laevigata | RLG00000032134 |
| rosa_multiflora | Rmu_sc0000120.1_g000019 |
| rosa_roxburghii | Rroxscaffold_1G00061820 |
| rosa_rugosa | Rorug05G0019900 Rorug05G0020000 |
| rosa_samantha | Rh5AG115600 Rh5BG112200 Rh5CG123800 Rh5DG112000 |
| rosa_wichuraiana | Rw5G009980 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 72 |
| Acc36I | ACCTGC | 2 cut(s) | 346, 879 |
| AccBSI | CCGCTC | 1 cut(s) | 1445 |
| AccI | GTMKAC | 1 cut(s) | 763 |
| AciI | CCGC | 5 cut(s) | 476, 735, 1309, 1403, 1443 |
| AclWI | GGATC | 5 cut(s) | 485, 570, 839, 852, 1393 |
| AcoI | YGGCCR | 1 cut(s) | 1306 |
| AcvI | CACGTG | 2 cut(s) | 341, 1199 |
| AcyI | GRCGYC | 1 cut(s) | 69 |
| AfaI | GTAC | 1 cut(s) | 822 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 392, 808, 1490 |
| AflIII | ACRYGT | 2 cut(s) | 338, 1196 |
| AgsI | TTSAA | 5 cut(s) | 127, 215, 518, 787, 1518 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1044 |
| AjnI | CCWGG | 5 cut(s) | 202, 547, 656, 1299, 1359 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 119, 151 |
| Alw21I | GWGCWC | 1 cut(s) | 61 |
| Alw26I | GTCTC | 2 cut(s) | 213, 1031 |
| AlwI | GGATC | 5 cut(s) | 485, 570, 839, 852, 1393 |
| AoxI | GGCC | 3 cut(s) | 200, 1297, 1306 |
| ApeKI | GCWGC | 2 cut(s) | 283, 1311 |
| AseI | ATTAAT | 1 cut(s) | 1233 |
| AspLEI | GCGC | 1 cut(s) | 92 |
| AspS9I | GGNCC | 1 cut(s) | 200 |
| AsuHPI | GGTGA | 6 cut(s) | 449, 823, 869, 1016, 1088, 1172 |
| BamHI | GGATCC | 1 cut(s) | 844 |
| BanII | GRGCYC | 1 cut(s) | 61 |
| BbrPI | CACGTG | 2 cut(s) | 341, 1199 |
| BbsI | GAAGAC | 1 cut(s) | 1501 |
| Bbv12I | GWGCWC | 1 cut(s) | 61 |
| BbvI | GCAGC | 2 cut(s) | 295, 1298 |
| BccI | CCATC | 3 cut(s) | 25, 553, 1278 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 740, 774 |
| BciT130I | CCWGG | 5 cut(s) | 204, 549, 658, 1301, 1361 |
| BcoDI | GTCTC | 2 cut(s) | 213, 1031 |
| BfaI | CTAG | 2 cut(s) | 1290, 1448 |
| BfmI | CTRYAG | 4 cut(s) | 195, 390, 429, 749 |
| BfuAI | ACCTGC | 2 cut(s) | 346, 879 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1305 |
| BisI | GCNGC | 3 cut(s) | 284, 1309, 1312 |
| BlpI | GCTNAGC | 1 cut(s) | 409 |
| BlsI | GCNGC | 3 cut(s) | 285, 1310, 1313 |
| Bme1390I | CCNGG | 5 cut(s) | 204, 549, 658, 1301, 1361 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1044 |
| BmgT120I | GGNCC | 1 cut(s) | 200 |
| BmiI | GGNNCC | 1 cut(s) | 846 |
| BmrFI | CCNGG | 5 cut(s) | 204, 549, 658, 1301, 1361 |
| BmsI | GCATC | 7 cut(s) | 299, 302, 364, 463, 883, 1177, 1190 |
| BpiI | GAAGAC | 1 cut(s) | 1501 |
| BpmI | CTGGAG | 3 cut(s) | 369, 918, 1382 |
| Bpu10I | CCTNAGC | 1 cut(s) | 638 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 409 |
| BpuEI | CTTGAG | 2 cut(s) | 614, 1442 |
| BsaAI | YACGTR | 2 cut(s) | 341, 1199 |
| BsaHI | GRCGYC | 1 cut(s) | 69 |
| BsaJI | CCNNGG | 3 cut(s) | 47, 579, 803 |
| BsaWI | WCCGGW | 2 cut(s) | 61, 956 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 392, 808, 1490 |
| Bse1I | ACTGG | 2 cut(s) | 167, 901 |
| Bse3DI | GCAATG | 2 cut(s) | 82, 1319 |
| BseBI | CCWGG | 5 cut(s) | 204, 549, 658, 1301, 1361 |
| BseDI | CCNNGG | 3 cut(s) | 47, 579, 803 |
| BseGI | GGATG | 3 cut(s) | 57, 1213, 1266 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 392, 808, 1490 |
| BseMI | GCAATG | 2 cut(s) | 82, 1319 |
| BseMII | CTCAG | 4 cut(s) | 423, 698, 912, 1316 |
| BseNI | ACTGG | 2 cut(s) | 167, 901 |
| BseXI | GCAGC | 2 cut(s) | 295, 1298 |
| BsgI | GTGCAG | 1 cut(s) | 302 |
| BshFI | GGCC | 3 cut(s) | 202, 1299, 1308 |
| BsiHKAI | GWGCWC | 1 cut(s) | 61 |
| BsiSI | CCGG | 2 cut(s) | 62, 957 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 392, 808, 1490 |
| BsmAI | GTCTC | 2 cut(s) | 213, 1031 |
| BsnI | GGCC | 3 cut(s) | 202, 1299, 1308 |
| Bsp1286I | GDGCHC | 1 cut(s) | 61 |
| Bsp143I | GATC | 6 cut(s) | 490, 499, 562, 844, 1398, 1556 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 409 |
| Bsp19I | CCATGG | 1 cut(s) | 47 |
| BspACI | CCGC | 5 cut(s) | 476, 735, 1309, 1403, 1443 |
| BspANI | GGCC | 3 cut(s) | 202, 1299, 1308 |
| BspCNI | CTCAG | 4 cut(s) | 422, 697, 913, 1317 |
| BspHI | TCATGA | 2 cut(s) | 888, 1333 |
| BspLI | GGNNCC | 1 cut(s) | 846 |
| BspMAI | CTGCAG | 1 cut(s) | 753 |
| BspMI | ACCTGC | 2 cut(s) | 346, 879 |
| BspPI | GGATC | 5 cut(s) | 485, 570, 839, 852, 1393 |
| BsrBI | CCGCTC | 1 cut(s) | 1445 |
| BsrDI | GCAATG | 2 cut(s) | 82, 1319 |
| BsrI | ACTGG | 2 cut(s) | 167, 901 |
| BssECI | CCNNGG | 3 cut(s) | 47, 579, 803 |
| BssMI | GATC | 6 cut(s) | 490, 499, 562, 844, 1398, 1556 |
| BssNI | GRCGYC | 1 cut(s) | 69 |
| BssT1I | CCWWGG | 3 cut(s) | 47, 579, 803 |
| Bst2UI | CCWGG | 5 cut(s) | 204, 549, 658, 1301, 1361 |
| Bst4CI | ACNGT | 2 cut(s) | 670, 757 |
| BstACI | GRCGYC | 1 cut(s) | 69 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1187 |
| BstBAI | YACGTR | 2 cut(s) | 341, 1199 |
| BstC8I | GCNNGC | 3 cut(s) | 854, 1297, 1306 |
| BstDEI | CTNAG | 6 cut(s) | 409, 638, 684, 921, 938, 1325 |
| BstDSI | CCRYGG | 1 cut(s) | 47 |
| BstEII | GGTNACC | 1 cut(s) | 1076 |
| BstF5I | GGATG | 3 cut(s) | 57, 1213, 1266 |
| BstHHI | GCGC | 1 cut(s) | 92 |
| BstKTI | GATC | 6 cut(s) | 493, 502, 565, 847, 1401, 1559 |
| BstMAI | GTCTC | 2 cut(s) | 213, 1031 |
| BstMBI | GATC | 6 cut(s) | 490, 499, 562, 844, 1398, 1556 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 862, 871, 1187, 1301, 1305 |
| BstNI | CCWGG | 5 cut(s) | 204, 549, 658, 1301, 1361 |
| BstPI | GGTNACC | 1 cut(s) | 1076 |
| BstSCI | CCNGG | 5 cut(s) | 202, 547, 656, 1299, 1359 |
| BstSFI | CTRYAG | 4 cut(s) | 195, 390, 429, 749 |
| BstV1I | GCAGC | 2 cut(s) | 295, 1298 |
| BstV2I | GAAGAC | 1 cut(s) | 1501 |
| BstX2I | RGATCY | 1 cut(s) | 844 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1277 |
| BstYI | RGATCY | 1 cut(s) | 844 |
| BsuRI | GGCC | 3 cut(s) | 202, 1299, 1308 |
| BtgI | CCRYGG | 1 cut(s) | 47 |
| BtsCI | GGATG | 3 cut(s) | 57, 1213, 1266 |
| BtsIMutI | CAGTG | 1 cut(s) | 174 |
| BveI | ACCTGC | 2 cut(s) | 346, 879 |
| Cac8I | GCNNGC | 3 cut(s) | 854, 1297, 1306 |
| CciI | TCATGA | 2 cut(s) | 888, 1333 |
| CfoI | GCGC | 1 cut(s) | 92 |
| Cfr13I | GGNCC | 1 cut(s) | 200 |
| CseI | GACGC | 1 cut(s) | 847 |
| Csp6I | GTAC | 1 cut(s) | 821 |
| CviAII | CATG | 7 cut(s) | 48, 145, 188, 889, 996, 1334, 1383 |
| CviQI | GTAC | 1 cut(s) | 821 |
| DdeI | CTNAG | 6 cut(s) | 409, 638, 684, 921, 938, 1325 |
| DpnI | GATC | 6 cut(s) | 492, 501, 564, 846, 1400, 1558 |
| DpnII | GATC | 6 cut(s) | 490, 499, 562, 844, 1398, 1556 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1044 |
| EaeI | YGGCCR | 1 cut(s) | 1306 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1044 |
| Ecl136II | GAGCTC | 1 cut(s) | 59 |
| Eco130I | CCWWGG | 3 cut(s) | 47, 579, 803 |
| Eco24I | GRGCYC | 1 cut(s) | 61 |
| Eco32I | GATATC | 1 cut(s) | 1165 |
| Eco53kI | GAGCTC | 1 cut(s) | 59 |
| Eco72I | CACGTG | 2 cut(s) | 341, 1199 |
| Eco91I | GGTNACC | 1 cut(s) | 1076 |
| EcoICRI | GAGCTC | 1 cut(s) | 59 |
| EcoO65I | GGTNACC | 1 cut(s) | 1076 |
| EcoRII | CCWGG | 5 cut(s) | 202, 547, 656, 1299, 1359 |
| EcoRV | GATATC | 1 cut(s) | 1165 |
| EcoT14I | CCWWGG | 3 cut(s) | 47, 579, 803 |
| EcoT38I | GRGCYC | 1 cut(s) | 61 |
| ErhI | CCWWGG | 3 cut(s) | 47, 579, 803 |
| FaeI | CATG | 7 cut(s) | 51, 148, 191, 892, 999, 1337, 1386 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1486, 1518 |
| FatI | CATG | 7 cut(s) | 47, 144, 187, 888, 995, 1333, 1382 |
| FauI | CCCGC | 3 cut(s) | 469, 1410, 1450 |
| FblI | GTMKAC | 1 cut(s) | 763 |
| Fnu4HI | GCNGC | 3 cut(s) | 284, 1309, 1312 |
| FokI | GGATG | 3 cut(s) | 64, 1220, 1253 |
| FriOI | GRGCYC | 1 cut(s) | 61 |
| Fsp4HI | GCNGC | 3 cut(s) | 284, 1309, 1312 |
| FspBI | CTAG | 2 cut(s) | 1290, 1448 |
| GlaI | GCGC | 1 cut(s) | 91 |
| GluI | GCNGC | 3 cut(s) | 284, 1309, 1312 |
| GsuI | CTGGAG | 3 cut(s) | 369, 918, 1382 |
| HaeIII | GGCC | 3 cut(s) | 202, 1299, 1308 |
| HapII | CCGG | 2 cut(s) | 62, 957 |
| HgaI | GACGC | 1 cut(s) | 847 |
| HhaI | GCGC | 1 cut(s) | 92 |
| Hin1I | GRCGYC | 1 cut(s) | 69 |
| Hin1II | CATG | 7 cut(s) | 51, 148, 191, 892, 999, 1337, 1386 |
| Hin6I | GCGC | 1 cut(s) | 90 |
| HinP1I | GCGC | 1 cut(s) | 90 |
| HincII | GTYRAC | 2 cut(s) | 67, 232 |
| HindII | GTYRAC | 2 cut(s) | 67, 232 |
| HindIII | AAGCTT | 2 cut(s) | 854, 1500 |
| HinfI | GANTC | 7 cut(s) | 35, 256, 682, 783, 1379, 1418, 1472 |
| HpaI | GTTAAC | 1 cut(s) | 232 |
| HpaII | CCGG | 2 cut(s) | 62, 957 |
| HphI | GGTGA | 6 cut(s) | 449, 823, 869, 1016, 1088, 1172 |
| Hpy166II | GTNNAC | 5 cut(s) | 67, 232, 529, 764, 794 |
| Hpy188I | TCNGA | 7 cut(s) | 687, 694, 1131, 1186, 1398, 1477, 1561 |
| Hpy188III | TCNNGA | 8 cut(s) | 95, 457, 494, 889, 1334, 1351, 1448, 1518 |
| Hpy8I | GTNNAC | 5 cut(s) | 67, 232, 529, 764, 794 |
| Hpy99I | CGWCG | 1 cut(s) | 1050 |
| HpyAV | CCTTC | 7 cut(s) | 124, 323, 546, 720, 741, 995, 1273 |
| HpyCH4III | ACNGT | 2 cut(s) | 670, 757 |
| HpyCH4IV | ACGT | 3 cut(s) | 69, 340, 1198 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 862, 871, 1187, 1301, 1305 |
| HpyF3I | CTNAG | 6 cut(s) | 409, 638, 684, 921, 938, 1325 |
| HpySE526I | ACGT | 3 cut(s) | 69, 340, 1198 |
| Hsp92I | GRCGYC | 1 cut(s) | 69 |
| Hsp92II | CATG | 7 cut(s) | 51, 148, 191, 892, 999, 1337, 1386 |
| HspAI | GCGC | 1 cut(s) | 90 |
| KspAI | GTTAAC | 1 cut(s) | 232 |
| Kzo9I | GATC | 6 cut(s) | 490, 499, 562, 844, 1398, 1556 |
| LmnI | GCTCC | 5 cut(s) | 64, 291, 388, 1131, 1362 |
| Lsp1109I | GCAGC | 2 cut(s) | 295, 1298 |
| LweI | GCATC | 7 cut(s) | 299, 302, 364, 463, 883, 1177, 1190 |
| MaeI | CTAG | 2 cut(s) | 1290, 1448 |
| MaeII | ACGT | 3 cut(s) | 69, 340, 1198 |
| MaeIII | GTNAC | 5 cut(s) | 605, 1059, 1076, 1219, 1526 |
| MalI | GATC | 6 cut(s) | 492, 501, 564, 846, 1400, 1558 |
| MbiI | CCGCTC | 1 cut(s) | 1445 |
| MboI | GATC | 6 cut(s) | 490, 499, 562, 844, 1398, 1556 |
| MboII | GAAGA | 6 cut(s) | 29, 139, 147, 417, 1020, 1506 |
| MfeI | CAATTG | 1 cut(s) | 276 |
| MflI | RGATCY | 1 cut(s) | 844 |
| MhlI | GDGCHC | 1 cut(s) | 61 |
| MluCI | AATT | 3 cut(s) | 276, 1234, 1513 |
| MlyI | GAGTC | 3 cut(s) | 250, 676, 1481 |
| MmeI | TCCRAC | 2 cut(s) | 263, 909 |
| MnlI | CCTC | 5 cut(s) | 113, 637, 773, 893, 1330 |
| MseI | TTAA | 7 cut(s) | 114, 231, 360, 1116, 1212, 1233, 1545 |
| MspA1I | CMGCKG | 3 cut(s) | 389, 413, 1311 |
| MspI | CCGG | 2 cut(s) | 62, 957 |
| MspR9I | CCNGG | 5 cut(s) | 204, 549, 658, 1301, 1361 |
| MunI | CAATTG | 1 cut(s) | 276 |
| MvaI | CCWGG | 5 cut(s) | 204, 549, 658, 1301, 1361 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 862, 871, 1187, 1301, 1305 |
| NcoI | CCATGG | 1 cut(s) | 47 |
| NdeII | GATC | 6 cut(s) | 490, 499, 562, 844, 1398, 1556 |
| NlaIII | CATG | 7 cut(s) | 51, 148, 191, 892, 999, 1337, 1386 |
| NlaIV | GGNNCC | 1 cut(s) | 846 |
| NmuCI | GTSAC | 1 cut(s) | 1076 |
| PagI | TCATGA | 2 cut(s) | 888, 1333 |
| PfeI | GAWTC | 4 cut(s) | 35, 783, 1379, 1418 |
| PfoI | TCCNGGA | 1 cut(s) | 1359 |
| PkrI | GCNGC | 3 cut(s) | 285, 1310, 1313 |
| PleI | GAGTC | 3 cut(s) | 250, 676, 1480 |
| PmaCI | CACGTG | 2 cut(s) | 341, 1199 |
| PmlI | CACGTG | 2 cut(s) | 341, 1199 |
| PpsI | GAGTC | 3 cut(s) | 250, 676, 1480 |
| Ppu21I | YACGTR | 2 cut(s) | 341, 1199 |
| PshBI | ATTAAT | 1 cut(s) | 1233 |
| Psp124BI | GAGCTC | 1 cut(s) | 61 |
| Psp6I | CCWGG | 5 cut(s) | 202, 547, 656, 1299, 1359 |
| PspCI | CACGTG | 2 cut(s) | 341, 1199 |
| PspEI | GGTNACC | 1 cut(s) | 1076 |
| PspGI | CCWGG | 5 cut(s) | 202, 547, 656, 1299, 1359 |
| PspN4I | GGNNCC | 1 cut(s) | 846 |
| PspPI | GGNCC | 1 cut(s) | 200 |
| PstI | CTGCAG | 1 cut(s) | 753 |
| PsuI | RGATCY | 1 cut(s) | 844 |
| PvuII | CAGCTG | 2 cut(s) | 389, 413 |
| RsaI | GTAC | 1 cut(s) | 822 |
| RsaNI | GTAC | 1 cut(s) | 821 |
| SacI | GAGCTC | 1 cut(s) | 61 |
| SaqAI | TTAA | 7 cut(s) | 114, 231, 360, 1116, 1212, 1233, 1545 |
| SatI | GCNGC | 3 cut(s) | 284, 1309, 1312 |
| Sau3AI | GATC | 6 cut(s) | 490, 499, 562, 844, 1398, 1556 |
| Sau96I | GGNCC | 1 cut(s) | 200 |
| SchI | GAGTC | 3 cut(s) | 250, 676, 1481 |
| ScrFI | CCNGG | 5 cut(s) | 204, 549, 658, 1301, 1361 |
| SduI | GDGCHC | 1 cut(s) | 61 |
| SfaNI | GCATC | 7 cut(s) | 299, 302, 364, 463, 883, 1177, 1190 |
| SfcI | CTRYAG | 4 cut(s) | 195, 390, 429, 749 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 1305 |
| SmlI | CTYRAG | 2 cut(s) | 593, 1457 |
| SmoI | CTYRAG | 2 cut(s) | 593, 1457 |
| Sse9I | AATT | 3 cut(s) | 276, 1234, 1513 |
| SsiI | CCGC | 5 cut(s) | 476, 735, 1309, 1403, 1443 |
| SspMI | CTAG | 2 cut(s) | 1290, 1448 |
| SstI | GAGCTC | 1 cut(s) | 61 |
| StyD4I | CCNGG | 5 cut(s) | 202, 547, 656, 1299, 1359 |
| StyI | CCWWGG | 3 cut(s) | 47, 579, 803 |
| TaaI | ACNGT | 2 cut(s) | 670, 757 |
| TaiI | ACGT | 3 cut(s) | 72, 343, 1201 |
| TaqI | TCGA | 3 cut(s) | 81, 96, 1352 |
| TasI | AATT | 3 cut(s) | 276, 1234, 1513 |
| TauI | GCSGC | 1 cut(s) | 1311 |
| TfiI | GAWTC | 4 cut(s) | 35, 783, 1379, 1418 |
| Tru1I | TTAA | 7 cut(s) | 114, 231, 360, 1116, 1212, 1233, 1545 |
| Tru9I | TTAA | 7 cut(s) | 114, 231, 360, 1116, 1212, 1233, 1545 |
| TscAI | CASTG | 1 cut(s) | 174 |
| TseFI | GTSAC | 1 cut(s) | 1076 |
| TseI | GCWGC | 2 cut(s) | 283, 1311 |
| Tsp45I | GTSAC | 1 cut(s) | 1076 |
| TspDTI | ATGAA | 8 cut(s) | 204, 636, 702, 877, 977, 1255, 1371, 1401 |
| TspGWI | ACGGA | 2 cut(s) | 1021, 1297 |
| TspRI | CASTG | 1 cut(s) | 174 |
| VspI | ATTAAT | 1 cut(s) | 1233 |
| XbaI | TCTAGA | 1 cut(s) | 1447 |
| XmiI | GTMKAC | 1 cut(s) | 763 |
| XspI | CTAG | 2 cut(s) | 1290, 1448 |
| ZraI | GACGTC | 1 cut(s) | 70 |