AT4G15850

RNA helicase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
9001174 .. 9004734
3561 bp
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UTR
Exon/CDS
Intron
AT4G15850.1

Sequence Viewer

Length: 1569 bp
ATGGGGAGAGATAAAGAAGATAAGACAGAGATGGATTCGGTTGTTCCATGGATGAGAGCTCCGGTTGACGTCAGCAATGTCGAAAACTGCGCTCTCGATACCCTCCCTTGCCTTAATCCCAAGTTGAAGAAGGCATTGGAGAACATGGGCATATCTTCACTATTTCCAGTGCAAGTTGCAGTTTGGCATGAAACTATAGGGCCAGGTGGTTTTGAAAGAGACATCTGTGTTAACTCTCCAACAGGAAGTGGAAAGACTCTTTCTTATGCTTTACCAATTGTGCAGCTCCTTGCATCTCGTCCTGTGAGATGCCTTCGTGCTTTAGTCGTATTGCCAACACGTGATTTAGCCTTGCAGGTTAAAGATGTATTTGATGCAATAGCTCCAGCTGTAGGATTATCTGTTGGCTCAGCTGTGGGTCAATCTTCTATAGCTGGTGAAATCTCACAGCTTATCAAGACACCTAAACTTGATGCGGGAATATGCTATGATCCCGATGATCTTTCTCAAAACCTTGAAAGTGCTGTGGACATATTAGTAGCAACACCAGGAAGGCTGATGGATCATATCAACAACACCAAGGGCTTTACGCTTGAGCATTTGCGTTACCTTGTTGTTGATGAAACCGACAGATTGCTTAGGGAGGCATATCAATCCTGGCTACCAACTGTTCTGCAACTGACTCAGACATCTGACGATAGCCTATTTCCTTCATTTACACCATTTGTTCCTTCCGCTTTTGGTTCTCTGCAGACTGTTCGTAGACAAAGTGTGGAGAGAGGATTCAAGGGTAAACCATACCCAAGGCTGGTGAAAATGGTACTATCAGCTACATTGACGCAGGATCCAAGCAAGCTTATTCAGCTTGACCTGCATCACCCGTTATTCATGACAACTGGAGGAAGCCGATACAGACTACCTGAGAAGTTGGAATGTCTTAGACTGATTTGCGAAACCGGAATGAAGCCTGTATATTTGGTTGCTCTCCTAAAATCATGGGAAGGTGAAAAGTGTATCATTTTCACATCTTCCGTTGAGACAACTCGTCGTCTATGCAAGTTACTCAACTTTTTTGGTGACCCAAAAATAAAAGCAAAAGAGTATTCAGGTGGTCTTAACCAATCACTTCGGAGCAAAGAACTAAAAGCGTTTAGAAAAGGTGATATCCAAGTTCTTGTTGCATCTGATGCTCTAACACGTGGAATGGATGTTAAAGGGGTAACAAATGTTATTAATTATGATATGCCACCATTTGCAAAGACCTTCATCCATCGTGCTGGACGGACAGCTAGAGCAGGCCAGGCTGGCCGCTGCTTCACATTGCTGAGTAATCATGAGGTAAGGCGTTTCTCGAAGCTCCTGGAGAAAGTTGGGAGTGATTCATGTCCTATCTATCCGATCCCGCCTACTTCATTAGATTCCATTCGTGCCACTTACACACCCGCTCTAGAGAAGCTCAAGGAGTTGGTTGAGTCAGAAGCACCCAAGAAAGGAAGACAAGCTTTTAGACATAATTCAAGAACGGGTAACTCCCAAACCAAACTTAACAAACCGAGATCAGAAGCATAG

Protein Analysis

522

Amino Acids

57.72

Weight (kDa)

9.2

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 56 - 236 3.1e-27 DEAD/DEAH box helicase
ResIII PF04851 72 - 219 1.7e-08 Type III restriction enzyme, res subunit
Helicase_C PF00271 324 - 433 4e-24 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 72
Acc36I ACCTGC 2 cut(s) 346, 879
AccBSI CCGCTC 1 cut(s) 1445
AccI GTMKAC 1 cut(s) 763
AciI CCGC 5 cut(s) 476, 735, 1309, 1403, 1443
AclWI GGATC 5 cut(s) 485, 570, 839, 852, 1393
AcoI YGGCCR 1 cut(s) 1306
AcvI CACGTG 2 cut(s) 341, 1199
AcyI GRCGYC 1 cut(s) 69
AfaI GTAC 1 cut(s) 822
AfiI CCNNNNNNNGG 3 cut(s) 392, 808, 1490
AflIII ACRYGT 2 cut(s) 338, 1196
AgsI TTSAA 5 cut(s) 127, 215, 518, 787, 1518
AhdI GACNNNNNGTC 1 cut(s) 1044
AjnI CCWGG 5 cut(s) 202, 547, 656, 1299, 1359
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
Alw21I GWGCWC 1 cut(s) 61
Alw26I GTCTC 2 cut(s) 213, 1031
AlwI GGATC 5 cut(s) 485, 570, 839, 852, 1393
AoxI GGCC 3 cut(s) 200, 1297, 1306
ApeKI GCWGC 2 cut(s) 283, 1311
AseI ATTAAT 1 cut(s) 1233
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 200
AsuHPI GGTGA 6 cut(s) 449, 823, 869, 1016, 1088, 1172
BamHI GGATCC 1 cut(s) 844
BanII GRGCYC 1 cut(s) 61
BbrPI CACGTG 2 cut(s) 341, 1199
BbsI GAAGAC 1 cut(s) 1501
Bbv12I GWGCWC 1 cut(s) 61
BbvI GCAGC 2 cut(s) 295, 1298
BccI CCATC 3 cut(s) 25, 553, 1278
BcgI CGANNNNNNTGC 2 cut(s) 740, 774
BciT130I CCWGG 5 cut(s) 204, 549, 658, 1301, 1361
BcoDI GTCTC 2 cut(s) 213, 1031
BfaI CTAG 2 cut(s) 1290, 1448
BfmI CTRYAG 4 cut(s) 195, 390, 429, 749
BfuAI ACCTGC 2 cut(s) 346, 879
BglI GCCNNNNNGGC 1 cut(s) 1305
BisI GCNGC 3 cut(s) 284, 1309, 1312
BlpI GCTNAGC 1 cut(s) 409
BlsI GCNGC 3 cut(s) 285, 1310, 1313
Bme1390I CCNGG 5 cut(s) 204, 549, 658, 1301, 1361
BmeRI GACNNNNNGTC 1 cut(s) 1044
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 1 cut(s) 846
BmrFI CCNGG 5 cut(s) 204, 549, 658, 1301, 1361
BmsI GCATC 7 cut(s) 299, 302, 364, 463, 883, 1177, 1190
BpiI GAAGAC 1 cut(s) 1501
BpmI CTGGAG 3 cut(s) 369, 918, 1382
Bpu10I CCTNAGC 1 cut(s) 638
Bpu1102I GCTNAGC 1 cut(s) 409
BpuEI CTTGAG 2 cut(s) 614, 1442
BsaAI YACGTR 2 cut(s) 341, 1199
BsaHI GRCGYC 1 cut(s) 69
BsaJI CCNNGG 3 cut(s) 47, 579, 803
BsaWI WCCGGW 2 cut(s) 61, 956
Bsc4I CCNNNNNNNGG 3 cut(s) 392, 808, 1490
Bse1I ACTGG 2 cut(s) 167, 901
Bse3DI GCAATG 2 cut(s) 82, 1319
BseBI CCWGG 5 cut(s) 204, 549, 658, 1301, 1361
BseDI CCNNGG 3 cut(s) 47, 579, 803
BseGI GGATG 3 cut(s) 57, 1213, 1266
BseLI CCNNNNNNNGG 3 cut(s) 392, 808, 1490
BseMI GCAATG 2 cut(s) 82, 1319
BseMII CTCAG 4 cut(s) 423, 698, 912, 1316
BseNI ACTGG 2 cut(s) 167, 901
BseXI GCAGC 2 cut(s) 295, 1298
BsgI GTGCAG 1 cut(s) 302
BshFI GGCC 3 cut(s) 202, 1299, 1308
BsiHKAI GWGCWC 1 cut(s) 61
BsiSI CCGG 2 cut(s) 62, 957
BslI CCNNNNNNNGG 3 cut(s) 392, 808, 1490
BsmAI GTCTC 2 cut(s) 213, 1031
BsnI GGCC 3 cut(s) 202, 1299, 1308
Bsp1286I GDGCHC 1 cut(s) 61
Bsp143I GATC 6 cut(s) 490, 499, 562, 844, 1398, 1556
Bsp1720I GCTNAGC 1 cut(s) 409
Bsp19I CCATGG 1 cut(s) 47
BspACI CCGC 5 cut(s) 476, 735, 1309, 1403, 1443
BspANI GGCC 3 cut(s) 202, 1299, 1308
BspCNI CTCAG 4 cut(s) 422, 697, 913, 1317
BspHI TCATGA 2 cut(s) 888, 1333
BspLI GGNNCC 1 cut(s) 846
BspMAI CTGCAG 1 cut(s) 753
BspMI ACCTGC 2 cut(s) 346, 879
BspPI GGATC 5 cut(s) 485, 570, 839, 852, 1393
BsrBI CCGCTC 1 cut(s) 1445
BsrDI GCAATG 2 cut(s) 82, 1319
BsrI ACTGG 2 cut(s) 167, 901
BssECI CCNNGG 3 cut(s) 47, 579, 803
BssMI GATC 6 cut(s) 490, 499, 562, 844, 1398, 1556
BssNI GRCGYC 1 cut(s) 69
BssT1I CCWWGG 3 cut(s) 47, 579, 803
Bst2UI CCWGG 5 cut(s) 204, 549, 658, 1301, 1361
Bst4CI ACNGT 2 cut(s) 670, 757
BstACI GRCGYC 1 cut(s) 69
BstAPI GCANNNNNTGC 1 cut(s) 1187
BstBAI YACGTR 2 cut(s) 341, 1199
BstC8I GCNNGC 3 cut(s) 854, 1297, 1306
BstDEI CTNAG 6 cut(s) 409, 638, 684, 921, 938, 1325
BstDSI CCRYGG 1 cut(s) 47
BstEII GGTNACC 1 cut(s) 1076
BstF5I GGATG 3 cut(s) 57, 1213, 1266
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 6 cut(s) 493, 502, 565, 847, 1401, 1559
BstMAI GTCTC 2 cut(s) 213, 1031
BstMBI GATC 6 cut(s) 490, 499, 562, 844, 1398, 1556
BstMWI GCNNNNNNNGC 5 cut(s) 862, 871, 1187, 1301, 1305
BstNI CCWGG 5 cut(s) 204, 549, 658, 1301, 1361
BstPI GGTNACC 1 cut(s) 1076
BstSCI CCNGG 5 cut(s) 202, 547, 656, 1299, 1359
BstSFI CTRYAG 4 cut(s) 195, 390, 429, 749
BstV1I GCAGC 2 cut(s) 295, 1298
BstV2I GAAGAC 1 cut(s) 1501
BstX2I RGATCY 1 cut(s) 844
BstXI CCANNNNNNTGG 1 cut(s) 1277
BstYI RGATCY 1 cut(s) 844
BsuRI GGCC 3 cut(s) 202, 1299, 1308
BtgI CCRYGG 1 cut(s) 47
BtsCI GGATG 3 cut(s) 57, 1213, 1266
BtsIMutI CAGTG 1 cut(s) 174
BveI ACCTGC 2 cut(s) 346, 879
Cac8I GCNNGC 3 cut(s) 854, 1297, 1306
CciI TCATGA 2 cut(s) 888, 1333
CfoI GCGC 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 200
CseI GACGC 1 cut(s) 847
Csp6I GTAC 1 cut(s) 821
CviAII CATG 7 cut(s) 48, 145, 188, 889, 996, 1334, 1383
CviQI GTAC 1 cut(s) 821
DdeI CTNAG 6 cut(s) 409, 638, 684, 921, 938, 1325
DpnI GATC 6 cut(s) 492, 501, 564, 846, 1400, 1558
DpnII GATC 6 cut(s) 490, 499, 562, 844, 1398, 1556
DriI GACNNNNNGTC 1 cut(s) 1044
EaeI YGGCCR 1 cut(s) 1306
Eam1105I GACNNNNNGTC 1 cut(s) 1044
Ecl136II GAGCTC 1 cut(s) 59
Eco130I CCWWGG 3 cut(s) 47, 579, 803
Eco24I GRGCYC 1 cut(s) 61
Eco32I GATATC 1 cut(s) 1165
Eco53kI GAGCTC 1 cut(s) 59
Eco72I CACGTG 2 cut(s) 341, 1199
Eco91I GGTNACC 1 cut(s) 1076
EcoICRI GAGCTC 1 cut(s) 59
EcoO65I GGTNACC 1 cut(s) 1076
EcoRII CCWGG 5 cut(s) 202, 547, 656, 1299, 1359
EcoRV GATATC 1 cut(s) 1165
EcoT14I CCWWGG 3 cut(s) 47, 579, 803
EcoT38I GRGCYC 1 cut(s) 61
ErhI CCWWGG 3 cut(s) 47, 579, 803
FaeI CATG 7 cut(s) 51, 148, 191, 892, 999, 1337, 1386
FalI AAGNNNNNCTT 2 cut(s) 1486, 1518
FatI CATG 7 cut(s) 47, 144, 187, 888, 995, 1333, 1382
FauI CCCGC 3 cut(s) 469, 1410, 1450
FblI GTMKAC 1 cut(s) 763
Fnu4HI GCNGC 3 cut(s) 284, 1309, 1312
FokI GGATG 3 cut(s) 64, 1220, 1253
FriOI GRGCYC 1 cut(s) 61
Fsp4HI GCNGC 3 cut(s) 284, 1309, 1312
FspBI CTAG 2 cut(s) 1290, 1448
GlaI GCGC 1 cut(s) 91
GluI GCNGC 3 cut(s) 284, 1309, 1312
GsuI CTGGAG 3 cut(s) 369, 918, 1382
HaeIII GGCC 3 cut(s) 202, 1299, 1308
HapII CCGG 2 cut(s) 62, 957
HgaI GACGC 1 cut(s) 847
HhaI GCGC 1 cut(s) 92
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 7 cut(s) 51, 148, 191, 892, 999, 1337, 1386
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HincII GTYRAC 2 cut(s) 67, 232
HindII GTYRAC 2 cut(s) 67, 232
HindIII AAGCTT 2 cut(s) 854, 1500
HinfI GANTC 7 cut(s) 35, 256, 682, 783, 1379, 1418, 1472
HpaI GTTAAC 1 cut(s) 232
HpaII CCGG 2 cut(s) 62, 957
HphI GGTGA 6 cut(s) 449, 823, 869, 1016, 1088, 1172
Hpy166II GTNNAC 5 cut(s) 67, 232, 529, 764, 794
Hpy188I TCNGA 7 cut(s) 687, 694, 1131, 1186, 1398, 1477, 1561
Hpy188III TCNNGA 8 cut(s) 95, 457, 494, 889, 1334, 1351, 1448, 1518
Hpy8I GTNNAC 5 cut(s) 67, 232, 529, 764, 794
Hpy99I CGWCG 1 cut(s) 1050
HpyAV CCTTC 7 cut(s) 124, 323, 546, 720, 741, 995, 1273
HpyCH4III ACNGT 2 cut(s) 670, 757
HpyCH4IV ACGT 3 cut(s) 69, 340, 1198
HpyF10VI GCNNNNNNNGC 5 cut(s) 862, 871, 1187, 1301, 1305
HpyF3I CTNAG 6 cut(s) 409, 638, 684, 921, 938, 1325
HpySE526I ACGT 3 cut(s) 69, 340, 1198
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 7 cut(s) 51, 148, 191, 892, 999, 1337, 1386
HspAI GCGC 1 cut(s) 90
KspAI GTTAAC 1 cut(s) 232
Kzo9I GATC 6 cut(s) 490, 499, 562, 844, 1398, 1556
LmnI GCTCC 5 cut(s) 64, 291, 388, 1131, 1362
Lsp1109I GCAGC 2 cut(s) 295, 1298
LweI GCATC 7 cut(s) 299, 302, 364, 463, 883, 1177, 1190
MaeI CTAG 2 cut(s) 1290, 1448
MaeII ACGT 3 cut(s) 69, 340, 1198
MaeIII GTNAC 5 cut(s) 605, 1059, 1076, 1219, 1526
MalI GATC 6 cut(s) 492, 501, 564, 846, 1400, 1558
MbiI CCGCTC 1 cut(s) 1445
MboI GATC 6 cut(s) 490, 499, 562, 844, 1398, 1556
MboII GAAGA 6 cut(s) 29, 139, 147, 417, 1020, 1506
MfeI CAATTG 1 cut(s) 276
MflI RGATCY 1 cut(s) 844
MhlI GDGCHC 1 cut(s) 61
MluCI AATT 3 cut(s) 276, 1234, 1513
MlyI GAGTC 3 cut(s) 250, 676, 1481
MmeI TCCRAC 2 cut(s) 263, 909
MnlI CCTC 5 cut(s) 113, 637, 773, 893, 1330
MseI TTAA 7 cut(s) 114, 231, 360, 1116, 1212, 1233, 1545
MspA1I CMGCKG 3 cut(s) 389, 413, 1311
MspI CCGG 2 cut(s) 62, 957
MspR9I CCNGG 5 cut(s) 204, 549, 658, 1301, 1361
MunI CAATTG 1 cut(s) 276
MvaI CCWGG 5 cut(s) 204, 549, 658, 1301, 1361
MwoI GCNNNNNNNGC 5 cut(s) 862, 871, 1187, 1301, 1305
NcoI CCATGG 1 cut(s) 47
NdeII GATC 6 cut(s) 490, 499, 562, 844, 1398, 1556
NlaIII CATG 7 cut(s) 51, 148, 191, 892, 999, 1337, 1386
NlaIV GGNNCC 1 cut(s) 846
NmuCI GTSAC 1 cut(s) 1076
PagI TCATGA 2 cut(s) 888, 1333
PfeI GAWTC 4 cut(s) 35, 783, 1379, 1418
PfoI TCCNGGA 1 cut(s) 1359
PkrI GCNGC 3 cut(s) 285, 1310, 1313
PleI GAGTC 3 cut(s) 250, 676, 1480
PmaCI CACGTG 2 cut(s) 341, 1199
PmlI CACGTG 2 cut(s) 341, 1199
PpsI GAGTC 3 cut(s) 250, 676, 1480
Ppu21I YACGTR 2 cut(s) 341, 1199
PshBI ATTAAT 1 cut(s) 1233
Psp124BI GAGCTC 1 cut(s) 61
Psp6I CCWGG 5 cut(s) 202, 547, 656, 1299, 1359
PspCI CACGTG 2 cut(s) 341, 1199
PspEI GGTNACC 1 cut(s) 1076
PspGI CCWGG 5 cut(s) 202, 547, 656, 1299, 1359
PspN4I GGNNCC 1 cut(s) 846
PspPI GGNCC 1 cut(s) 200
PstI CTGCAG 1 cut(s) 753
PsuI RGATCY 1 cut(s) 844
PvuII CAGCTG 2 cut(s) 389, 413
RsaI GTAC 1 cut(s) 822
RsaNI GTAC 1 cut(s) 821
SacI GAGCTC 1 cut(s) 61
SaqAI TTAA 7 cut(s) 114, 231, 360, 1116, 1212, 1233, 1545
SatI GCNGC 3 cut(s) 284, 1309, 1312
Sau3AI GATC 6 cut(s) 490, 499, 562, 844, 1398, 1556
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 3 cut(s) 250, 676, 1481
ScrFI CCNGG 5 cut(s) 204, 549, 658, 1301, 1361
SduI GDGCHC 1 cut(s) 61
SfaNI GCATC 7 cut(s) 299, 302, 364, 463, 883, 1177, 1190
SfcI CTRYAG 4 cut(s) 195, 390, 429, 749
SfiI GGCCNNNNNGGCC 1 cut(s) 1305
SmlI CTYRAG 2 cut(s) 593, 1457
SmoI CTYRAG 2 cut(s) 593, 1457
Sse9I AATT 3 cut(s) 276, 1234, 1513
SsiI CCGC 5 cut(s) 476, 735, 1309, 1403, 1443
SspMI CTAG 2 cut(s) 1290, 1448
SstI GAGCTC 1 cut(s) 61
StyD4I CCNGG 5 cut(s) 202, 547, 656, 1299, 1359
StyI CCWWGG 3 cut(s) 47, 579, 803
TaaI ACNGT 2 cut(s) 670, 757
TaiI ACGT 3 cut(s) 72, 343, 1201
TaqI TCGA 3 cut(s) 81, 96, 1352
TasI AATT 3 cut(s) 276, 1234, 1513
TauI GCSGC 1 cut(s) 1311
TfiI GAWTC 4 cut(s) 35, 783, 1379, 1418
Tru1I TTAA 7 cut(s) 114, 231, 360, 1116, 1212, 1233, 1545
Tru9I TTAA 7 cut(s) 114, 231, 360, 1116, 1212, 1233, 1545
TscAI CASTG 1 cut(s) 174
TseFI GTSAC 1 cut(s) 1076
TseI GCWGC 2 cut(s) 283, 1311
Tsp45I GTSAC 1 cut(s) 1076
TspDTI ATGAA 8 cut(s) 204, 636, 702, 877, 977, 1255, 1371, 1401
TspGWI ACGGA 2 cut(s) 1021, 1297
TspRI CASTG 1 cut(s) 174
VspI ATTAAT 1 cut(s) 1233
XbaI TCTAGA 1 cut(s) 1447
XmiI GTMKAC 1 cut(s) 763
XspI CTAG 2 cut(s) 1290, 1448
ZraI GACGTC 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.