Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0011427

Physical Location & Seq

Genomic Coordinates Reverse (-)

1331041 .. 1331856

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0020000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGTTCTAATCAAACACTCTGAAGAGTTCCATCTTGAGTATGATCTCTTGGTCAAGCAAAACCAAATTTTAAAGAACCGATTGCAGTCATTGAGCACAAGAGTCGAACAGGTAGAATGTGAACTTGAGATCAAGAAGAAAAAGGTTAATGATGTAGAAGCCAAGAATGTTTCTCTAAGAAAGCAACTTGATGAGTTCCTCCAAGAGCACCATTGTATGCTTGAGACCAAGAAAAAAGAGGTTACTGCTGCAGAAGCCCAGAATAAAGATATAAAGAAGCAATTTGATGAGCTCTTCCTTGAGCACCTTAGCTTACTTGAGAAGAACGATACTTTAAACAACCAGTTGCAGTCATCAGGGACCAAAATCGTACGGCTAGAATATGAAGTTTTGGCCAAGACAAGAGACTTGAAAGCTGCTGAAGCCAATGATATTACTTTAAGGAAGGATAAGAAAACTTTGGAGGAGCAGTTGCAGGCATGGGGCACAAAACTGAGACACAAAGAAATCATAGAATCTGAACTTAACACAAGGAAAAGAAGTATCAGTGCATATGAAGCCAAAATTACTGATCTAAAAAACCAAGTTGAAGAGCTCTCTCTTCAACACGATTGTTTGCTTGGGAACAACCTGACTTTAAGGAACCAGGTGCAGTTGTCGCACACAAGACTTAGACAAACAGAATCAGAACTTGGGACCAAGACACAAGAAGTTTGTGTTGTAAAAACCAATATTGTTGCTCTAAATAAGGAAAATGATGATTTGAAGAACCAGTTGCGGTCATTGGAGACAAGACTTAAAAGAGATAGAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017151 GO:0019899 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

271

Amino Acids

31.7

Weight (kDa)

8.21

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15850
fragaria_vesca	FvH4_3g05121 FvH4_3g05121
malus_domestica	MD05G1280500.v1.1
prunus_persica	Prupe.4G084900_v2.0.a1 Prupe.4G084900_v2.0.a1 Prupe.4G084900_v2.0.a1 Prupe.4G084900_v2.0.a1
pyrus_communis	pycom05g26080
rosa_chinensis	RchiOBHm_Chr5g0014641
rosa_laevigata	RLG00000032134
rosa_multiflora	Rmu_sc0000120.1_g000019
rosa_roxburghii	Rroxscaffold_1G00061820
rosa_rugosa	Rorug05G0019900 Rorug05G0020000
rosa_samantha	Rh5AG115600 Rh5BG112200 Rh5CG123800 Rh5DG112000
rosa_wichuraiana	Rw5G009980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	778
AcoI	YGGCCR	1 cut(s)	393
AcsI	RAATTY	1 cut(s)	66
AcuI	CTGAAG	2 cut(s)	42, 441
AfaI	GTAC	1 cut(s)	372
AgsI	TTSAA	4 cut(s)	412, 590, 605, 766
AjnI	CCWGG	1 cut(s)	645
AjuI	GAANNNNNNNTTGG	2 cut(s)	675, 707
AluBI	AGCT	4 cut(s)	292, 312, 416, 595
AluI	AGCT	4 cut(s)	292, 312, 416, 595
Alw21I	GWGCWC	5 cut(s)	98, 210, 294, 306, 597
Alw26I	GTCTC	4 cut(s)	218, 399, 490, 782
AoxI	GGCC	1 cut(s)	393
ApeKI	GCWGC	2 cut(s)	248, 416
ApoI	RAATTY	1 cut(s)	66
AspS9I	GGNCC	2 cut(s)	360, 696
AvaII	GGWCC	2 cut(s)	360, 696
BaeGI	GKGCMC	1 cut(s)	488
BalI	TGGCCA	1 cut(s)	395
BanII	GRGCYC	2 cut(s)	294, 597
Bbv12I	GWGCWC	5 cut(s)	98, 210, 294, 306, 597
BbvI	GCAGC	2 cut(s)	235, 403
BccI	CCATC	1 cut(s)	39
BceAI	ACGGC	1 cut(s)	389
BcgI	CGANNNNNNTGC	2 cut(s)	85, 119
BciT130I	CCWGG	1 cut(s)	647
BcoDI	GTCTC	4 cut(s)	218, 399, 490, 782
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	1 cut(s)	249
BisI	GCNGC	2 cut(s)	249, 417
BlsI	GCNGC	2 cut(s)	250, 418
Bme1390I	CCNGG	1 cut(s)	647
Bme18I	GGWCC	2 cut(s)	360, 696
BmgT120I	GGNCC	2 cut(s)	360, 696
BmiI	GGNNCC	3 cut(s)	361, 644, 697
BmrFI	CCNGG	1 cut(s)	647
Bpu10I	CCTNAGC	1 cut(s)	308
BpuEI	CTTGAG	5 cut(s)	56, 146, 242, 320, 338
BsaI	GGTCTC	1 cut(s)	218
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bse1I	ACTGG	2 cut(s)	343, 772
BseBI	CCWGG	1 cut(s)	647
BseMII	CTCAG	1 cut(s)	485
BseNI	ACTGG	2 cut(s)	343, 772
BseRI	GAGGAG	1 cut(s)	479
BseSI	GKGCMC	1 cut(s)	488
BseXI	GCAGC	2 cut(s)	235, 403
BsgI	GTGCAG	1 cut(s)	671
BshFI	GGCC	1 cut(s)	395
BsiHKAI	GWGCWC	5 cut(s)	98, 210, 294, 306, 597
BsiWI	CGTACG	1 cut(s)	370
BslFI	GGGAC	2 cut(s)	373, 709
BsmAI	GTCTC	4 cut(s)	218, 399, 490, 782
BsmFI	GGGAC	2 cut(s)	373, 709
BsnI	GGCC	1 cut(s)	395
Bso31I	GGTCTC	1 cut(s)	218
Bsp1286I	GDGCHC	6 cut(s)	98, 210, 294, 306, 488, 597
Bsp143I	GATC	3 cut(s)	43, 129, 571
BspACI	CCGC	1 cut(s)	778
BspANI	GGCC	1 cut(s)	395
BspCNI	CTCAG	1 cut(s)	486
BspLI	GGNNCC	3 cut(s)	361, 644, 697
BspMAI	CTGCAG	1 cut(s)	253
BspQI	GCTCTTC	2 cut(s)	299, 585
BspTNI	GGTCTC	1 cut(s)	218
BsrI	ACTGG	2 cut(s)	343, 772
BssMI	GATC	3 cut(s)	43, 129, 571
Bst2UI	CCWGG	1 cut(s)	647
Bst6I	CTCTTC	4 cut(s)	18, 299, 585, 606
BstC8I	GCNNGC	1 cut(s)	477
BstDEI	CTNAG	4 cut(s)	176, 308, 494, 671
BstKTI	GATC	3 cut(s)	46, 132, 574
BstMAI	GTCTC	4 cut(s)	218, 399, 490, 782
BstMBI	GATC	3 cut(s)	43, 129, 571
BstMWI	GCNNNNNNNGC	4 cut(s)	254, 422, 557, 658
BstNI	CCWGG	1 cut(s)	647
BstSCI	CCNGG	1 cut(s)	645
BstSFI	CTRYAG	1 cut(s)	249
BstSLI	GKGCMC	1 cut(s)	488
BstV1I	GCAGC	2 cut(s)	235, 403
BsuRI	GGCC	1 cut(s)	395
BtsIMutI	CAGTG	1 cut(s)	553
Cac8I	GCNNGC	1 cut(s)	477
Cfr13I	GGNCC	2 cut(s)	360, 696
CsiI	ACCWGGT	1 cut(s)	645
Csp6I	GTAC	1 cut(s)	371
CviAII	CATG	1 cut(s)	480
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	4 cut(s)	176, 308, 494, 671
DpnI	GATC	3 cut(s)	45, 131, 573
DpnII	GATC	3 cut(s)	43, 129, 571
DraI	TTTAAA	2 cut(s)	72, 336
EaeI	YGGCCR	1 cut(s)	393
Eam1104I	CTCTTC	4 cut(s)	18, 299, 585, 606
EarI	CTCTTC	4 cut(s)	18, 299, 585, 606
Ecl136II	GAGCTC	2 cut(s)	292, 595
Eco24I	GRGCYC	2 cut(s)	294, 597
Eco31I	GGTCTC	1 cut(s)	218
Eco47I	GGWCC	2 cut(s)	360, 696
Eco53kI	GAGCTC	2 cut(s)	292, 595
Eco57I	CTGAAG	2 cut(s)	42, 441
EcoICRI	GAGCTC	2 cut(s)	292, 595
EcoRII	CCWGG	1 cut(s)	645
EcoT38I	GRGCYC	2 cut(s)	294, 597
FaeI	CATG	1 cut(s)	483
FaiI	YATR	8 cut(s)	42, 218, 272, 384, 481, 512, 553, 555
FaqI	GGGAC	2 cut(s)	373, 709
FatI	CATG	1 cut(s)	479
FauNDI	CATATG	1 cut(s)	553
Fnu4HI	GCNGC	2 cut(s)	249, 417
FriOI	GRGCYC	2 cut(s)	294, 597
Fsp4HI	GCNGC	2 cut(s)	249, 417
FspBI	CTAG	1 cut(s)	377
GluI	GCNGC	2 cut(s)	249, 417
HaeIII	GGCC	1 cut(s)	395
Hin1II	CATG	1 cut(s)	483
HinfI	GANTC	4 cut(s)	102, 515, 683, 810
Hpy166II	GTNNAC	1 cut(s)	122
Hpy188I	TCNGA	4 cut(s)	22, 520, 688, 815
Hpy188III	TCNNGA	2 cut(s)	35, 133
Hpy8I	GTNNAC	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	439
HpyCH4V	TGCA	6 cut(s)	85, 251, 349, 475, 551, 652
HpyF10VI	GCNNNNNNNGC	4 cut(s)	254, 422, 557, 658
HpyF3I	CTNAG	4 cut(s)	176, 308, 494, 671
Hsp92II	CATG	1 cut(s)	483
Kzo9I	GATC	3 cut(s)	43, 129, 571
LguI	GCTCTTC	2 cut(s)	299, 585
LmnI	GCTCC	1 cut(s)	466
LpnPI	CCDG	9 cut(s)	95, 272, 342, 356, 461, 632, 644, 659, 785
Lsp1109I	GCAGC	2 cut(s)	235, 403
MabI	ACCWGGT	1 cut(s)	645
MaeI	CTAG	1 cut(s)	377
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	3 cut(s)	45, 131, 573
MboI	GATC	3 cut(s)	43, 129, 571
MboII	GAAGA	7 cut(s)	35, 148, 286, 334, 593, 602, 778
MhlI	GDGCHC	6 cut(s)	98, 210, 294, 306, 488, 597
MlsI	TGGCCA	1 cut(s)	395
MluCI	AATT	3 cut(s)	66, 281, 564
MluNI	TGGCCA	1 cut(s)	395
MlyI	GAGTC	1 cut(s)	111
MnlI	CCTC	3 cut(s)	209, 232, 457
Mox20I	TGGCCA	1 cut(s)	395
MscI	TGGCCA	1 cut(s)	395
MseI	TTAA	7 cut(s)	71, 147, 335, 440, 525, 638, 798
Msp20I	TGGCCA	1 cut(s)	395
MspR9I	CCNGG	1 cut(s)	647
MvaI	CCWGG	1 cut(s)	647
MwoI	GCNNNNNNNGC	4 cut(s)	254, 422, 557, 658
NdeI	CATATG	1 cut(s)	553
NdeII	GATC	3 cut(s)	43, 129, 571
NlaIII	CATG	1 cut(s)	483
NlaIV	GGNNCC	3 cut(s)	361, 644, 697
PciSI	GCTCTTC	2 cut(s)	299, 585
PfeI	GAWTC	3 cut(s)	515, 683, 810
Pfl23II	CGTACG	1 cut(s)	370
PkrI	GCNGC	2 cut(s)	250, 418
PleI	GAGTC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	110
Psp124BI	GAGCTC	2 cut(s)	294, 597
Psp6I	CCWGG	1 cut(s)	645
PspGI	CCWGG	1 cut(s)	645
PspLI	CGTACG	1 cut(s)	370
PspN4I	GGNNCC	3 cut(s)	361, 644, 697
PspPI	GGNCC	2 cut(s)	360, 696
PstI	CTGCAG	1 cut(s)	253
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
SacI	GAGCTC	2 cut(s)	294, 597
SapI	GCTCTTC	2 cut(s)	299, 585
SaqAI	TTAA	7 cut(s)	71, 147, 335, 440, 525, 638, 798
SatI	GCNGC	2 cut(s)	249, 417
Sau3AI	GATC	3 cut(s)	43, 129, 571
Sau96I	GGNCC	2 cut(s)	360, 696
SchI	GAGTC	1 cut(s)	111
ScrFI	CCNGG	1 cut(s)	647
SduI	GDGCHC	6 cut(s)	98, 210, 294, 306, 488, 597
SexAI	ACCWGGT	1 cut(s)	645
SfcI	CTRYAG	1 cut(s)	249
SinI	GGWCC	2 cut(s)	360, 696
SmlI	CTYRAG	5 cut(s)	35, 125, 221, 299, 317
SmoI	CTYRAG	5 cut(s)	35, 125, 221, 299, 317
Sse9I	AATT	3 cut(s)	66, 281, 564
SsiI	CCGC	1 cut(s)	778
SspI	AATATT	1 cut(s)	733
SspMI	CTAG	1 cut(s)	377
SstI	GAGCTC	2 cut(s)	294, 597
StyD4I	CCNGG	1 cut(s)	645
TaqI	TCGA	1 cut(s)	105
TasI	AATT	3 cut(s)	66, 281, 564
TfiI	GAWTC	3 cut(s)	515, 683, 810
Tru1I	TTAA	7 cut(s)	71, 147, 335, 440, 525, 638, 798
Tru9I	TTAA	7 cut(s)	71, 147, 335, 440, 525, 638, 798
TscAI	CASTG	1 cut(s)	553
TseI	GCWGC	2 cut(s)	248, 416
TspDTI	ATGAA	2 cut(s)	399, 570
TspRI	CASTG	1 cut(s)	553
VpaK11BI	GGWCC	2 cut(s)	360, 696
XapI	RAATTY	1 cut(s)	66
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.