DEAD-box ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G15850 |
| fragaria_vesca | FvH4_3g05121 FvH4_3g05121 |
| malus_domestica | MD05G1280500.v1.1 |
| prunus_persica | Prupe.4G084900_v2.0.a1 Prupe.4G084900_v2.0.a1 Prupe.4G084900_v2.0.a1 Prupe.4G084900_v2.0.a1 |
| pyrus_communis | pycom05g26080 |
| rosa_chinensis | RchiOBHm_Chr5g0014641 |
| rosa_laevigata | RLG00000032134 |
| rosa_multiflora | Rmu_sc0000120.1_g000019 |
| rosa_roxburghii | Rroxscaffold_1G00061820 |
| rosa_rugosa | Rorug05G0019900 Rorug05G0020000 |
| rosa_samantha | Rh5AG115600 Rh5BG112200 Rh5CG123800 Rh5DG112000 |
| rosa_wichuraiana | Rw5G009980 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 391 |
| Acc16I | TGCGCA | 1 cut(s) | 714 |
| Acc36I | ACCTGC | 3 cut(s) | 343, 391, 1262 |
| AccBSI | CCGCTC | 1 cut(s) | 1417 |
| AccI | GTMKAC | 2 cut(s) | 310, 1034 |
| AccII | CGCG | 2 cut(s) | 315, 684 |
| AccIII | TCCGGA | 1 cut(s) | 1146 |
| AciI | CCGC | 1 cut(s) | 1415 |
| AclWI | GGATC | 3 cut(s) | 211, 833, 846 |
| AcsI | RAATTY | 1 cut(s) | 438 |
| AcuI | CTGAAG | 3 cut(s) | 143, 452, 1157 |
| AfaI | GTAC | 4 cut(s) | 279, 1122, 1167, 1388 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 389, 549 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 891, 1041 |
| AjiI | CACGTC | 1 cut(s) | 1020 |
| AjnI | CCWGG | 6 cut(s) | 116, 199, 797, 834, 1440, 1478 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 116, 148 |
| Alw26I | GTCTC | 3 cut(s) | 182, 484, 1451 |
| AlwI | GGATC | 3 cut(s) | 211, 833, 846 |
| Ama87I | CYCGRG | 1 cut(s) | 544 |
| Aor13HI | TCCGGA | 1 cut(s) | 1146 |
| AoxI | GGCC | 3 cut(s) | 196, 1102, 1291 |
| ApoI | RAATTY | 1 cut(s) | 438 |
| AseI | ATTAAT | 1 cut(s) | 228 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1142 |
| AspLEI | GCGC | 4 cut(s) | 317, 686, 715, 979 |
| AspS9I | GGNCC | 2 cut(s) | 197, 559 |
| AsuC2I | CCSGG | 2 cut(s) | 545, 546 |
| AvaI | CYCGRG | 1 cut(s) | 544 |
| AvaII | GGWCC | 1 cut(s) | 559 |
| BamHI | GGATCC | 1 cut(s) | 838 |
| BauI | CACGAG | 2 cut(s) | 336, 1191 |
| BbsI | GAAGAC | 3 cut(s) | 257, 1332, 1497 |
| BceAI | ACGGC | 1 cut(s) | 1127 |
| BciT130I | CCWGG | 6 cut(s) | 118, 201, 799, 836, 1442, 1480 |
| BcnI | CCSGG | 2 cut(s) | 545, 546 |
| BcoDI | GTCTC | 3 cut(s) | 182, 484, 1451 |
| BfmI | CTRYAG | 3 cut(s) | 350, 387, 426 |
| BfuAI | ACCTGC | 3 cut(s) | 343, 391, 1262 |
| BglII | AGATCT | 1 cut(s) | 758 |
| BlpI | GCTNAGC | 1 cut(s) | 855 |
| BmcAI | AGTACT | 2 cut(s) | 1167, 1388 |
| Bme1390I | CCNGG | 8 cut(s) | 118, 201, 545, 546, 799, 836, 1442, 1480 |
| Bme18I | GGWCC | 1 cut(s) | 559 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 891, 1041 |
| BmeT110I | CYCGRG | 1 cut(s) | 544 |
| BmgBI | CACGTC | 1 cut(s) | 1020 |
| BmgT120I | GGNCC | 2 cut(s) | 197, 559 |
| BmiI | GGNNCC | 1 cut(s) | 840 |
| BmrFI | CCNGG | 8 cut(s) | 118, 201, 545, 546, 799, 836, 1442, 1480 |
| BmrI | ACTGGG | 1 cut(s) | 158 |
| BmsI | GCATC | 5 cut(s) | 39, 604, 877, 1017, 1171 |
| BmuI | ACTGGG | 1 cut(s) | 158 |
| BpiI | GAAGAC | 3 cut(s) | 257, 1332, 1497 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1358, 1390 |
| BpmI | CTGGAG | 2 cut(s) | 1462, 1463 |
| Bpu10I | CCTNAGC | 3 cut(s) | 462, 635, 991 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 855 |
| BpuEI | CTTGAG | 2 cut(s) | 611, 788 |
| BpuMI | CCSGG | 2 cut(s) | 545, 546 |
| Bsa29I | ATCGAT | 1 cut(s) | 628 |
| BsaBI | GATNNNNATC | 1 cut(s) | 867 |
| BsaJI | CCNNGG | 8 cut(s) | 44, 116, 199, 543, 544, 797, 834, 1440 |
| BsaWI | WCCGGW | 1 cut(s) | 1146 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 748, 778 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 389, 549 |
| Bse1I | ACTGG | 8 cut(s) | 35, 164, 244, 649, 895, 1303, 1401, 1498 |
| Bse3DI | GCAATG | 1 cut(s) | 1191 |
| Bse8I | GATNNNNATC | 1 cut(s) | 867 |
| BseAI | TCCGGA | 1 cut(s) | 1146 |
| BseBI | CCWGG | 6 cut(s) | 118, 201, 799, 836, 1442, 1480 |
| BseCI | ATCGAT | 1 cut(s) | 628 |
| BseDI | CCNNGG | 8 cut(s) | 44, 116, 199, 543, 544, 797, 834, 1440 |
| BseGI | GGATG | 3 cut(s) | 54, 871, 1207 |
| BseJI | GATNNNNATC | 1 cut(s) | 867 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 389, 549 |
| BseMI | GCAATG | 1 cut(s) | 1191 |
| BseMII | CTCAG | 4 cut(s) | 498, 649, 869, 1356 |
| BseNI | ACTGG | 8 cut(s) | 35, 164, 244, 649, 895, 1303, 1401, 1498 |
| BsgI | GTGCAG | 1 cut(s) | 27 |
| Bsh1236I | CGCG | 2 cut(s) | 315, 684 |
| BshFI | GGCC | 3 cut(s) | 198, 1104, 1293 |
| BshVI | ATCGAT | 1 cut(s) | 628 |
| BsiHKCI | CYCGRG | 1 cut(s) | 544 |
| BsiSI | CCGG | 2 cut(s) | 545, 1147 |
| BslFI | GGGAC | 1 cut(s) | 715 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 389, 549 |
| BsmAI | GTCTC | 3 cut(s) | 182, 484, 1451 |
| BsmFI | GGGAC | 1 cut(s) | 715 |
| BsmI | GAATGC | 2 cut(s) | 89, 1142 |
| BsnI | GGCC | 3 cut(s) | 198, 1104, 1293 |
| BsoBI | CYCGRG | 1 cut(s) | 544 |
| Bsp13I | TCCGGA | 1 cut(s) | 1146 |
| Bsp1407I | TGTACA | 1 cut(s) | 277 |
| Bsp143I | GATC | 6 cut(s) | 203, 625, 758, 838, 862, 1086 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 855 |
| Bsp19I | CCATGG | 1 cut(s) | 44 |
| BspACI | CCGC | 1 cut(s) | 1415 |
| BspANI | GGCC | 3 cut(s) | 198, 1104, 1293 |
| BspCNI | CTCAG | 4 cut(s) | 499, 648, 868, 1357 |
| BspDI | ATCGAT | 1 cut(s) | 628 |
| BspEI | TCCGGA | 1 cut(s) | 1146 |
| BspFNI | CGCG | 2 cut(s) | 315, 684 |
| BspLI | GGNNCC | 1 cut(s) | 840 |
| BspMAI | CTGCAG | 1 cut(s) | 354 |
| BspMI | ACCTGC | 3 cut(s) | 343, 391, 1262 |
| BspPI | GGATC | 3 cut(s) | 211, 833, 846 |
| BsrBI | CCGCTC | 1 cut(s) | 1417 |
| BsrDI | GCAATG | 1 cut(s) | 1191 |
| BsrGI | TGTACA | 1 cut(s) | 277 |
| BsrI | ACTGG | 8 cut(s) | 35, 164, 244, 649, 895, 1303, 1401, 1498 |
| BssECI | CCNNGG | 8 cut(s) | 44, 116, 199, 543, 544, 797, 834, 1440 |
| BssMI | GATC | 6 cut(s) | 203, 625, 758, 838, 862, 1086 |
| BssSI | CACGAG | 2 cut(s) | 336, 1191 |
| BssT1I | CCWWGG | 1 cut(s) | 44 |
| Bst2BI | CACGAG | 2 cut(s) | 336, 1191 |
| Bst2UI | CCWGG | 6 cut(s) | 118, 201, 799, 836, 1442, 1480 |
| Bst4CI | ACNGT | 5 cut(s) | 667, 729, 939, 966, 1462 |
| Bst6I | CTCTTC | 3 cut(s) | 157, 993, 1478 |
| BstAUI | TGTACA | 1 cut(s) | 277 |
| BstC8I | GCNNGC | 5 cut(s) | 174, 848, 852, 1242, 1291 |
| BstDEI | CTNAG | 7 cut(s) | 462, 507, 635, 855, 991, 1365, 1383 |
| BstDSI | CCRYGG | 1 cut(s) | 44 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 387 |
| BstF5I | GGATG | 3 cut(s) | 54, 871, 1207 |
| BstFNI | CGCG | 2 cut(s) | 315, 684 |
| BstHHI | GCGC | 4 cut(s) | 317, 686, 715, 979 |
| BstKTI | GATC | 6 cut(s) | 206, 628, 761, 841, 865, 1089 |
| BstMAI | GTCTC | 3 cut(s) | 182, 484, 1451 |
| BstMBI | GATC | 6 cut(s) | 203, 625, 758, 838, 862, 1086 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 49, 856, 865, 907 |
| BstNI | CCWGG | 6 cut(s) | 118, 201, 799, 836, 1442, 1480 |
| BstSCI | CCNGG | 8 cut(s) | 116, 199, 543, 544, 797, 834, 1440, 1478 |
| BstSFI | CTRYAG | 3 cut(s) | 350, 387, 426 |
| BstUI | CGCG | 2 cut(s) | 315, 684 |
| BstV2I | GAAGAC | 3 cut(s) | 257, 1332, 1497 |
| BstX2I | RGATCY | 3 cut(s) | 203, 758, 838 |
| BstYI | RGATCY | 3 cut(s) | 203, 758, 838 |
| Bsu15I | ATCGAT | 1 cut(s) | 628 |
| BsuRI | GGCC | 3 cut(s) | 198, 1104, 1293 |
| BsuTUI | ATCGAT | 1 cut(s) | 628 |
| BtgI | CCRYGG | 1 cut(s) | 44 |
| BtrI | CACGTC | 1 cut(s) | 1020 |
| BtsCI | GGATG | 3 cut(s) | 54, 871, 1207 |
| BtsIMutI | CAGTG | 3 cut(s) | 663, 962, 1133 |
| BveI | ACCTGC | 3 cut(s) | 343, 391, 1262 |
| Cac8I | GCNNGC | 5 cut(s) | 174, 848, 852, 1242, 1291 |
| CfoI | GCGC | 4 cut(s) | 317, 686, 715, 979 |
| Cfr13I | GGNCC | 2 cut(s) | 197, 559 |
| Cfr9I | CCCGGG | 1 cut(s) | 544 |
| ClaI | ATCGAT | 1 cut(s) | 628 |
| Csp6I | GTAC | 4 cut(s) | 278, 1121, 1166, 1387 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 951, 986 |
| CviAII | CATG | 2 cut(s) | 45, 142 |
| CviQI | GTAC | 4 cut(s) | 278, 1121, 1166, 1387 |
| DdeI | CTNAG | 7 cut(s) | 462, 507, 635, 855, 991, 1365, 1383 |
| DpnI | GATC | 6 cut(s) | 205, 627, 760, 840, 864, 1088 |
| DpnII | GATC | 6 cut(s) | 203, 625, 758, 838, 862, 1086 |
| DriI | GACNNNNNGTC | 2 cut(s) | 891, 1041 |
| Eam1104I | CTCTTC | 3 cut(s) | 157, 993, 1478 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 891, 1041 |
| EarI | CTCTTC | 3 cut(s) | 157, 993, 1478 |
| Eco130I | CCWWGG | 1 cut(s) | 44 |
| Eco147I | AGGCCT | 1 cut(s) | 1104 |
| Eco47I | GGWCC | 1 cut(s) | 559 |
| Eco57I | CTGAAG | 3 cut(s) | 143, 452, 1157 |
| Eco88I | CYCGRG | 1 cut(s) | 544 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 387 |
| EcoRII | CCWGG | 6 cut(s) | 116, 199, 797, 834, 1440, 1478 |
| EcoT14I | CCWWGG | 1 cut(s) | 44 |
| ErhI | CCWWGG | 1 cut(s) | 44 |
| FaeI | CATG | 2 cut(s) | 48, 145 |
| FaqI | GGGAC | 1 cut(s) | 715 |
| FatI | CATG | 2 cut(s) | 44, 141 |
| FblI | GTMKAC | 2 cut(s) | 310, 1034 |
| FokI | GGATG | 3 cut(s) | 61, 858, 1214 |
| FspI | TGCGCA | 1 cut(s) | 714 |
| GlaI | GCGC | 4 cut(s) | 316, 685, 714, 978 |
| GsuI | CTGGAG | 2 cut(s) | 1462, 1463 |
| HaeIII | GGCC | 3 cut(s) | 198, 1104, 1293 |
| HapII | CCGG | 2 cut(s) | 545, 1147 |
| HhaI | GCGC | 4 cut(s) | 317, 686, 715, 979 |
| Hin1II | CATG | 2 cut(s) | 48, 145 |
| Hin6I | GCGC | 4 cut(s) | 315, 684, 713, 977 |
| HinP1I | GCGC | 4 cut(s) | 315, 684, 713, 977 |
| HincII | GTYRAC | 2 cut(s) | 291, 1035 |
| HindII | GTYRAC | 2 cut(s) | 291, 1035 |
| HindIII | AAGCTT | 3 cut(s) | 464, 848, 988 |
| HinfI | GANTC | 5 cut(s) | 947, 1031, 1036, 1189, 1433 |
| HpaII | CCGG | 2 cut(s) | 545, 1147 |
| Hpy166II | GTNNAC | 4 cut(s) | 291, 311, 788, 1035 |
| Hpy188I | TCNGA | 3 cut(s) | 445, 1180, 1278 |
| Hpy188III | TCNNGA | 6 cut(s) | 338, 767, 883, 914, 1084, 1147 |
| Hpy8I | GTNNAC | 4 cut(s) | 291, 311, 788, 1035 |
| HpyCH4III | ACNGT | 5 cut(s) | 667, 729, 939, 966, 1462 |
| HpyCH4IV | ACGT | 1 cut(s) | 1019 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 49, 856, 865, 907 |
| HpyF3I | CTNAG | 7 cut(s) | 462, 507, 635, 855, 991, 1365, 1383 |
| HpySE526I | ACGT | 1 cut(s) | 1019 |
| Hsp92II | CATG | 2 cut(s) | 48, 145 |
| HspAI | GCGC | 4 cut(s) | 315, 684, 713, 977 |
| Kpn2I | TCCGGA | 1 cut(s) | 1146 |
| Kzo9I | GATC | 6 cut(s) | 203, 625, 758, 838, 862, 1086 |
| LmnI | GCTCC | 1 cut(s) | 1422 |
| LweI | GCATC | 5 cut(s) | 39, 604, 877, 1017, 1171 |
| MaeII | ACGT | 1 cut(s) | 1019 |
| MaeIII | GTNAC | 3 cut(s) | 510, 1353, 1403 |
| MalI | GATC | 6 cut(s) | 205, 627, 760, 840, 864, 1088 |
| MbiI | CCGCTC | 1 cut(s) | 1417 |
| MboI | GATC | 6 cut(s) | 203, 625, 758, 838, 862, 1086 |
| MfeI | CAATTG | 2 cut(s) | 60, 375 |
| MflI | RGATCY | 3 cut(s) | 203, 758, 838 |
| MluCI | AATT | 7 cut(s) | 60, 229, 375, 438, 1072, 1228, 1448 |
| MlyI | GAGTC | 3 cut(s) | 1030, 1040, 1183 |
| MmeI | TCCRAC | 2 cut(s) | 260, 1256 |
| MnlI | CCTC | 7 cut(s) | 99, 355, 634, 765, 1209, 1324, 1486 |
| MroI | TCCGGA | 1 cut(s) | 1146 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1142 |
| MseI | TTAA | 6 cut(s) | 228, 303, 357, 780, 1335, 1344 |
| MspI | CCGG | 2 cut(s) | 545, 1147 |
| MspR9I | CCNGG | 8 cut(s) | 118, 201, 545, 546, 799, 836, 1442, 1480 |
| MunI | CAATTG | 2 cut(s) | 60, 375 |
| Mva1269I | GAATGC | 2 cut(s) | 89, 1142 |
| MvaI | CCWGG | 6 cut(s) | 118, 201, 799, 836, 1442, 1480 |
| MvnI | CGCG | 2 cut(s) | 315, 684 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 49, 856, 865, 907 |
| NciI | CCSGG | 2 cut(s) | 545, 546 |
| NcoI | CCATGG | 1 cut(s) | 44 |
| NdeII | GATC | 6 cut(s) | 203, 625, 758, 838, 862, 1086 |
| NlaIII | CATG | 2 cut(s) | 48, 145 |
| NlaIV | GGNNCC | 1 cut(s) | 840 |
| NsbI | TGCGCA | 1 cut(s) | 714 |
| PaqCI | CACCTGC | 1 cut(s) | 391 |
| PceI | AGGCCT | 1 cut(s) | 1104 |
| PctI | GAATGC | 2 cut(s) | 89, 1142 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1142 |
| PfeI | GAWTC | 2 cut(s) | 947, 1433 |
| PfoI | TCCNGGA | 1 cut(s) | 1478 |
| PleI | GAGTC | 3 cut(s) | 1030, 1039, 1183 |
| PpsI | GAGTC | 3 cut(s) | 1030, 1039, 1183 |
| PshBI | ATTAAT | 1 cut(s) | 228 |
| Psp6I | CCWGG | 6 cut(s) | 116, 199, 797, 834, 1440, 1478 |
| PspGI | CCWGG | 6 cut(s) | 116, 199, 797, 834, 1440, 1478 |
| PspN4I | GGNNCC | 1 cut(s) | 840 |
| PspPI | GGNCC | 2 cut(s) | 197, 559 |
| PstI | CTGCAG | 1 cut(s) | 354 |
| PsuI | RGATCY | 3 cut(s) | 203, 758, 838 |
| RsaI | GTAC | 4 cut(s) | 279, 1122, 1167, 1388 |
| RsaNI | GTAC | 4 cut(s) | 278, 1121, 1166, 1387 |
| SalI | GTCGAC | 1 cut(s) | 1033 |
| SaqAI | TTAA | 6 cut(s) | 228, 303, 357, 780, 1335, 1344 |
| Sau3AI | GATC | 6 cut(s) | 203, 625, 758, 838, 862, 1086 |
| Sau96I | GGNCC | 2 cut(s) | 197, 559 |
| SbfI | CCTGCAGG | 1 cut(s) | 354 |
| ScaI | AGTACT | 2 cut(s) | 1167, 1388 |
| SchI | GAGTC | 3 cut(s) | 1030, 1040, 1183 |
| ScrFI | CCNGG | 8 cut(s) | 118, 201, 545, 546, 799, 836, 1442, 1480 |
| SdaI | CCTGCAGG | 1 cut(s) | 354 |
| SfaNI | GCATC | 5 cut(s) | 39, 604, 877, 1017, 1171 |
| SfcI | CTRYAG | 3 cut(s) | 350, 387, 426 |
| SinI | GGWCC | 1 cut(s) | 559 |
| SmaI | CCCGGG | 1 cut(s) | 546 |
| SmlI | CTYRAG | 2 cut(s) | 590, 767 |
| SmoI | CTYRAG | 2 cut(s) | 590, 767 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 354 |
| Sse9I | AATT | 7 cut(s) | 60, 229, 375, 438, 1072, 1228, 1448 |
| SseBI | AGGCCT | 1 cut(s) | 1104 |
| SsiI | CCGC | 1 cut(s) | 1415 |
| StuI | AGGCCT | 1 cut(s) | 1104 |
| StyD4I | CCNGG | 8 cut(s) | 116, 199, 543, 544, 797, 834, 1440, 1478 |
| StyI | CCWWGG | 1 cut(s) | 44 |
| TaaI | ACNGT | 5 cut(s) | 667, 729, 939, 966, 1462 |
| TaiI | ACGT | 1 cut(s) | 1022 |
| TaqI | TCGA | 3 cut(s) | 628, 1034, 1267 |
| TasI | AATT | 7 cut(s) | 60, 229, 375, 438, 1072, 1228, 1448 |
| TatI | WGTACW | 3 cut(s) | 277, 1165, 1386 |
| TfiI | GAWTC | 2 cut(s) | 947, 1433 |
| Tru1I | TTAA | 6 cut(s) | 228, 303, 357, 780, 1335, 1344 |
| Tru9I | TTAA | 6 cut(s) | 228, 303, 357, 780, 1335, 1344 |
| TscAI | CASTG | 3 cut(s) | 670, 969, 1140 |
| TspDTI | ATGAA | 5 cut(s) | 450, 633, 708, 1164, 1446 |
| TspMI | CCCGGG | 1 cut(s) | 544 |
| TspRI | CASTG | 3 cut(s) | 670, 969, 1140 |
| VpaK11BI | GGWCC | 1 cut(s) | 559 |
| VspI | ATTAAT | 1 cut(s) | 228 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 387 |
| XapI | RAATTY | 1 cut(s) | 438 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 42, 124 |
| XmaI | CCCGGG | 1 cut(s) | 544 |
| XmiI | GTMKAC | 2 cut(s) | 310, 1034 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1142 |
| ZrmI | AGTACT | 2 cut(s) | 1167, 1388 |