Prupe.4G084900_v2.0.a1

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
4160080 .. 4164628
4549 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G084900.2

Sequence Viewer

Length: 1530 bp
ATGGGTGCAGAAGAAGATAAACAAAAGAGCATACCAGTTCTGCCATGGATGCGAAGCCCAATTGATGTCAGTTCCTTTGACGAATGCCCTCTTACTCTCCTTCCTTGCCTTGACCCCAGGCTGAAGGTGGCTTTGGAGAACATGGAAATCTCTTCACTTTTCCCAGTTCAGCTTGCAGTTTGGCAAGAGACTATTGGCCCTGGATCTTTTGAGCGTGATTTATGTATTAATTCTCCAACTGGAAGTGGGAAGACTTTAGCTTATGCTTTGCCCATTGTACAAATGTTGTCAACTCGCTCTGTTAAATGTCTACGCGCTCTGGTGGTGTTGCCTACTCGTGATTTAGCCCTGCAGGTTAAAGAGGTTTTTTCTGCAATTGCACCTGCTGTAGGATTATCTGTTGGTCTTGCAGTTGGTCAATCTTCTATAGCTGATGAAATTTCAGAACTTATCAATAGACCTAAGCTTCAGTTGGGTGTCTCTTTTGACCCAGAAGATTTTTTGCCTGAGTTACAAAGCTCGGTGGATATATTGGTGGCTACCCCGGGAAGGCTAATGGACCATATCAATAACACTAAAGGATTTACGCTTGAGCATCTCTGTTATCTTGTTGTTGATGAAACAGATCGATTGCTCAGGGAGGCATACCAGTCTTGGCTACCCACTGTGCTTCAAATCACTCGCGCTAATGATGAAAGTTTCCTTCCTTGTGCGCAAACTTTTCTACCGTCCCCATTTTCCTTGAAAACCATAAGGAGATCTGGTCTTGAGAGGGGTTTTAAGGGTAAACCTTACCCCAGGCTTGTGAAAATGGTTCTTTCTGCCACGCTAACCCAGGATCCAAGCAAGCTTGCTCAGCTTGATCTGCATCATCCTTTATTCTTGACAACTGGTCAAAAGCGTTATCAGCTTCCAGAAAAACTACAATCCTATAAACTGTTTTGCGAATCAAAATACAAACCACTGTATTTGGTTGCGCTCTTACAAAGCTTAGGAGAAGAGAAGTGCATCGTTTTCACGTCATCTGTGGAGTCGACTCATCGTCTATGCACCTTATTGAACTCTTTTGATAATTTGCCTTTCAAGATCAAGGAGTATTCAGGCCTTCAACGGCAATCTGTACGAAGCAAGACACTGAAGGCATTCCGGAAAGGAGATATTCAAGTACTTGTTTCATCTGATGCAATGACTCGTGGAATGGATGTTGAAGGAGTGAGGAATGTCGTAAATTATGATATGCCTGCATACATAAAGACATATATACATCGAGCAGGTCGGACAGCAAGAGCAGGCCAAACTGGTTGTTGCTTCACATTGTTGCGTGAAGACGAGGTTAAGCGATTTAACAAGCTGTTACGCAAAGCTGAGAATAACTCTTGCTCTAAGTACTCCCTTCCTTCCAGTTACATTGAACCGCTCCACTCTGTCTATGAATCTGCCCTGGAGAAATTGAAGGAGACAGTTGAAATGGAAACCTCCAGGAAGAGAAAAACTGGCTTCAAGTCTTCTTTGAGTGGCGAAAGGAAATGA

Protein Analysis

510

Amino Acids

57.11

Weight (kDa)

8.9

Isoelectric Point (pI)

50.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 391
Acc16I TGCGCA 1 cut(s) 714
Acc36I ACCTGC 3 cut(s) 343, 391, 1262
AccBSI CCGCTC 1 cut(s) 1417
AccI GTMKAC 2 cut(s) 310, 1034
AccII CGCG 2 cut(s) 315, 684
AccIII TCCGGA 1 cut(s) 1146
AciI CCGC 1 cut(s) 1415
AclWI GGATC 3 cut(s) 211, 833, 846
AcsI RAATTY 1 cut(s) 438
AcuI CTGAAG 3 cut(s) 143, 452, 1157
AfaI GTAC 4 cut(s) 279, 1122, 1167, 1388
AfiI CCNNNNNNNGG 2 cut(s) 389, 549
AhdI GACNNNNNGTC 2 cut(s) 891, 1041
AjiI CACGTC 1 cut(s) 1020
AjnI CCWGG 6 cut(s) 116, 199, 797, 834, 1440, 1478
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
Alw26I GTCTC 3 cut(s) 182, 484, 1451
AlwI GGATC 3 cut(s) 211, 833, 846
Ama87I CYCGRG 1 cut(s) 544
Aor13HI TCCGGA 1 cut(s) 1146
AoxI GGCC 3 cut(s) 196, 1102, 1291
ApoI RAATTY 1 cut(s) 438
AseI ATTAAT 1 cut(s) 228
Asp700I GAANNNNTTC 1 cut(s) 1142
AspLEI GCGC 4 cut(s) 317, 686, 715, 979
AspS9I GGNCC 2 cut(s) 197, 559
AsuC2I CCSGG 2 cut(s) 545, 546
AvaI CYCGRG 1 cut(s) 544
AvaII GGWCC 1 cut(s) 559
BamHI GGATCC 1 cut(s) 838
BauI CACGAG 2 cut(s) 336, 1191
BbsI GAAGAC 3 cut(s) 257, 1332, 1497
BceAI ACGGC 1 cut(s) 1127
BciT130I CCWGG 6 cut(s) 118, 201, 799, 836, 1442, 1480
BcnI CCSGG 2 cut(s) 545, 546
BcoDI GTCTC 3 cut(s) 182, 484, 1451
BfmI CTRYAG 3 cut(s) 350, 387, 426
BfuAI ACCTGC 3 cut(s) 343, 391, 1262
BglII AGATCT 1 cut(s) 758
BlpI GCTNAGC 1 cut(s) 855
BmcAI AGTACT 2 cut(s) 1167, 1388
Bme1390I CCNGG 8 cut(s) 118, 201, 545, 546, 799, 836, 1442, 1480
Bme18I GGWCC 1 cut(s) 559
BmeRI GACNNNNNGTC 2 cut(s) 891, 1041
BmeT110I CYCGRG 1 cut(s) 544
BmgBI CACGTC 1 cut(s) 1020
BmgT120I GGNCC 2 cut(s) 197, 559
BmiI GGNNCC 1 cut(s) 840
BmrFI CCNGG 8 cut(s) 118, 201, 545, 546, 799, 836, 1442, 1480
BmrI ACTGGG 1 cut(s) 158
BmsI GCATC 5 cut(s) 39, 604, 877, 1017, 1171
BmuI ACTGGG 1 cut(s) 158
BpiI GAAGAC 3 cut(s) 257, 1332, 1497
BplI GAGNNNNNCTC 2 cut(s) 1358, 1390
BpmI CTGGAG 2 cut(s) 1462, 1463
Bpu10I CCTNAGC 3 cut(s) 462, 635, 991
Bpu1102I GCTNAGC 1 cut(s) 855
BpuEI CTTGAG 2 cut(s) 611, 788
BpuMI CCSGG 2 cut(s) 545, 546
Bsa29I ATCGAT 1 cut(s) 628
BsaBI GATNNNNATC 1 cut(s) 867
BsaJI CCNNGG 8 cut(s) 44, 116, 199, 543, 544, 797, 834, 1440
BsaWI WCCGGW 1 cut(s) 1146
BsaXI ACNNNNNCTCC 2 cut(s) 748, 778
Bsc4I CCNNNNNNNGG 2 cut(s) 389, 549
Bse1I ACTGG 8 cut(s) 35, 164, 244, 649, 895, 1303, 1401, 1498
Bse3DI GCAATG 1 cut(s) 1191
Bse8I GATNNNNATC 1 cut(s) 867
BseAI TCCGGA 1 cut(s) 1146
BseBI CCWGG 6 cut(s) 118, 201, 799, 836, 1442, 1480
BseCI ATCGAT 1 cut(s) 628
BseDI CCNNGG 8 cut(s) 44, 116, 199, 543, 544, 797, 834, 1440
BseGI GGATG 3 cut(s) 54, 871, 1207
BseJI GATNNNNATC 1 cut(s) 867
BseLI CCNNNNNNNGG 2 cut(s) 389, 549
BseMI GCAATG 1 cut(s) 1191
BseMII CTCAG 4 cut(s) 498, 649, 869, 1356
BseNI ACTGG 8 cut(s) 35, 164, 244, 649, 895, 1303, 1401, 1498
BsgI GTGCAG 1 cut(s) 27
Bsh1236I CGCG 2 cut(s) 315, 684
BshFI GGCC 3 cut(s) 198, 1104, 1293
BshVI ATCGAT 1 cut(s) 628
BsiHKCI CYCGRG 1 cut(s) 544
BsiSI CCGG 2 cut(s) 545, 1147
BslFI GGGAC 1 cut(s) 715
BslI CCNNNNNNNGG 2 cut(s) 389, 549
BsmAI GTCTC 3 cut(s) 182, 484, 1451
BsmFI GGGAC 1 cut(s) 715
BsmI GAATGC 2 cut(s) 89, 1142
BsnI GGCC 3 cut(s) 198, 1104, 1293
BsoBI CYCGRG 1 cut(s) 544
Bsp13I TCCGGA 1 cut(s) 1146
Bsp1407I TGTACA 1 cut(s) 277
Bsp143I GATC 6 cut(s) 203, 625, 758, 838, 862, 1086
Bsp1720I GCTNAGC 1 cut(s) 855
Bsp19I CCATGG 1 cut(s) 44
BspACI CCGC 1 cut(s) 1415
BspANI GGCC 3 cut(s) 198, 1104, 1293
BspCNI CTCAG 4 cut(s) 499, 648, 868, 1357
BspDI ATCGAT 1 cut(s) 628
BspEI TCCGGA 1 cut(s) 1146
BspFNI CGCG 2 cut(s) 315, 684
BspLI GGNNCC 1 cut(s) 840
BspMAI CTGCAG 1 cut(s) 354
BspMI ACCTGC 3 cut(s) 343, 391, 1262
BspPI GGATC 3 cut(s) 211, 833, 846
BsrBI CCGCTC 1 cut(s) 1417
BsrDI GCAATG 1 cut(s) 1191
BsrGI TGTACA 1 cut(s) 277
BsrI ACTGG 8 cut(s) 35, 164, 244, 649, 895, 1303, 1401, 1498
BssECI CCNNGG 8 cut(s) 44, 116, 199, 543, 544, 797, 834, 1440
BssMI GATC 6 cut(s) 203, 625, 758, 838, 862, 1086
BssSI CACGAG 2 cut(s) 336, 1191
BssT1I CCWWGG 1 cut(s) 44
Bst2BI CACGAG 2 cut(s) 336, 1191
Bst2UI CCWGG 6 cut(s) 118, 201, 799, 836, 1442, 1480
Bst4CI ACNGT 5 cut(s) 667, 729, 939, 966, 1462
Bst6I CTCTTC 3 cut(s) 157, 993, 1478
BstAUI TGTACA 1 cut(s) 277
BstC8I GCNNGC 5 cut(s) 174, 848, 852, 1242, 1291
BstDEI CTNAG 7 cut(s) 462, 507, 635, 855, 991, 1365, 1383
BstDSI CCRYGG 1 cut(s) 44
BstENI CCTNNNNNAGG 1 cut(s) 387
BstF5I GGATG 3 cut(s) 54, 871, 1207
BstFNI CGCG 2 cut(s) 315, 684
BstHHI GCGC 4 cut(s) 317, 686, 715, 979
BstKTI GATC 6 cut(s) 206, 628, 761, 841, 865, 1089
BstMAI GTCTC 3 cut(s) 182, 484, 1451
BstMBI GATC 6 cut(s) 203, 625, 758, 838, 862, 1086
BstMWI GCNNNNNNNGC 4 cut(s) 49, 856, 865, 907
BstNI CCWGG 6 cut(s) 118, 201, 799, 836, 1442, 1480
BstSCI CCNGG 8 cut(s) 116, 199, 543, 544, 797, 834, 1440, 1478
BstSFI CTRYAG 3 cut(s) 350, 387, 426
BstUI CGCG 2 cut(s) 315, 684
BstV2I GAAGAC 3 cut(s) 257, 1332, 1497
BstX2I RGATCY 3 cut(s) 203, 758, 838
BstYI RGATCY 3 cut(s) 203, 758, 838
Bsu15I ATCGAT 1 cut(s) 628
BsuRI GGCC 3 cut(s) 198, 1104, 1293
BsuTUI ATCGAT 1 cut(s) 628
BtgI CCRYGG 1 cut(s) 44
BtrI CACGTC 1 cut(s) 1020
BtsCI GGATG 3 cut(s) 54, 871, 1207
BtsIMutI CAGTG 3 cut(s) 663, 962, 1133
BveI ACCTGC 3 cut(s) 343, 391, 1262
Cac8I GCNNGC 5 cut(s) 174, 848, 852, 1242, 1291
CfoI GCGC 4 cut(s) 317, 686, 715, 979
Cfr13I GGNCC 2 cut(s) 197, 559
Cfr9I CCCGGG 1 cut(s) 544
ClaI ATCGAT 1 cut(s) 628
Csp6I GTAC 4 cut(s) 278, 1121, 1166, 1387
CspCI CAANNNNNGTGG 2 cut(s) 951, 986
CviAII CATG 2 cut(s) 45, 142
CviQI GTAC 4 cut(s) 278, 1121, 1166, 1387
DdeI CTNAG 7 cut(s) 462, 507, 635, 855, 991, 1365, 1383
DpnI GATC 6 cut(s) 205, 627, 760, 840, 864, 1088
DpnII GATC 6 cut(s) 203, 625, 758, 838, 862, 1086
DriI GACNNNNNGTC 2 cut(s) 891, 1041
Eam1104I CTCTTC 3 cut(s) 157, 993, 1478
Eam1105I GACNNNNNGTC 2 cut(s) 891, 1041
EarI CTCTTC 3 cut(s) 157, 993, 1478
Eco130I CCWWGG 1 cut(s) 44
Eco147I AGGCCT 1 cut(s) 1104
Eco47I GGWCC 1 cut(s) 559
Eco57I CTGAAG 3 cut(s) 143, 452, 1157
Eco88I CYCGRG 1 cut(s) 544
EcoNI CCTNNNNNAGG 1 cut(s) 387
EcoRII CCWGG 6 cut(s) 116, 199, 797, 834, 1440, 1478
EcoT14I CCWWGG 1 cut(s) 44
ErhI CCWWGG 1 cut(s) 44
FaeI CATG 2 cut(s) 48, 145
FaqI GGGAC 1 cut(s) 715
FatI CATG 2 cut(s) 44, 141
FblI GTMKAC 2 cut(s) 310, 1034
FokI GGATG 3 cut(s) 61, 858, 1214
FspI TGCGCA 1 cut(s) 714
GlaI GCGC 4 cut(s) 316, 685, 714, 978
GsuI CTGGAG 2 cut(s) 1462, 1463
HaeIII GGCC 3 cut(s) 198, 1104, 1293
HapII CCGG 2 cut(s) 545, 1147
HhaI GCGC 4 cut(s) 317, 686, 715, 979
Hin1II CATG 2 cut(s) 48, 145
Hin6I GCGC 4 cut(s) 315, 684, 713, 977
HinP1I GCGC 4 cut(s) 315, 684, 713, 977
HincII GTYRAC 2 cut(s) 291, 1035
HindII GTYRAC 2 cut(s) 291, 1035
HindIII AAGCTT 3 cut(s) 464, 848, 988
HinfI GANTC 5 cut(s) 947, 1031, 1036, 1189, 1433
HpaII CCGG 2 cut(s) 545, 1147
Hpy166II GTNNAC 4 cut(s) 291, 311, 788, 1035
Hpy188I TCNGA 3 cut(s) 445, 1180, 1278
Hpy188III TCNNGA 6 cut(s) 338, 767, 883, 914, 1084, 1147
Hpy8I GTNNAC 4 cut(s) 291, 311, 788, 1035
HpyCH4III ACNGT 5 cut(s) 667, 729, 939, 966, 1462
HpyCH4IV ACGT 1 cut(s) 1019
HpyF10VI GCNNNNNNNGC 4 cut(s) 49, 856, 865, 907
HpyF3I CTNAG 7 cut(s) 462, 507, 635, 855, 991, 1365, 1383
HpySE526I ACGT 1 cut(s) 1019
Hsp92II CATG 2 cut(s) 48, 145
HspAI GCGC 4 cut(s) 315, 684, 713, 977
Kpn2I TCCGGA 1 cut(s) 1146
Kzo9I GATC 6 cut(s) 203, 625, 758, 838, 862, 1086
LmnI GCTCC 1 cut(s) 1422
LweI GCATC 5 cut(s) 39, 604, 877, 1017, 1171
MaeII ACGT 1 cut(s) 1019
MaeIII GTNAC 3 cut(s) 510, 1353, 1403
MalI GATC 6 cut(s) 205, 627, 760, 840, 864, 1088
MbiI CCGCTC 1 cut(s) 1417
MboI GATC 6 cut(s) 203, 625, 758, 838, 862, 1086
MfeI CAATTG 2 cut(s) 60, 375
MflI RGATCY 3 cut(s) 203, 758, 838
MluCI AATT 7 cut(s) 60, 229, 375, 438, 1072, 1228, 1448
MlyI GAGTC 3 cut(s) 1030, 1040, 1183
MmeI TCCRAC 2 cut(s) 260, 1256
MnlI CCTC 7 cut(s) 99, 355, 634, 765, 1209, 1324, 1486
MroI TCCGGA 1 cut(s) 1146
MroXI GAANNNNTTC 1 cut(s) 1142
MseI TTAA 6 cut(s) 228, 303, 357, 780, 1335, 1344
MspI CCGG 2 cut(s) 545, 1147
MspR9I CCNGG 8 cut(s) 118, 201, 545, 546, 799, 836, 1442, 1480
MunI CAATTG 2 cut(s) 60, 375
Mva1269I GAATGC 2 cut(s) 89, 1142
MvaI CCWGG 6 cut(s) 118, 201, 799, 836, 1442, 1480
MvnI CGCG 2 cut(s) 315, 684
MwoI GCNNNNNNNGC 4 cut(s) 49, 856, 865, 907
NciI CCSGG 2 cut(s) 545, 546
NcoI CCATGG 1 cut(s) 44
NdeII GATC 6 cut(s) 203, 625, 758, 838, 862, 1086
NlaIII CATG 2 cut(s) 48, 145
NlaIV GGNNCC 1 cut(s) 840
NsbI TGCGCA 1 cut(s) 714
PaqCI CACCTGC 1 cut(s) 391
PceI AGGCCT 1 cut(s) 1104
PctI GAATGC 2 cut(s) 89, 1142
PdmI GAANNNNTTC 1 cut(s) 1142
PfeI GAWTC 2 cut(s) 947, 1433
PfoI TCCNGGA 1 cut(s) 1478
PleI GAGTC 3 cut(s) 1030, 1039, 1183
PpsI GAGTC 3 cut(s) 1030, 1039, 1183
PshBI ATTAAT 1 cut(s) 228
Psp6I CCWGG 6 cut(s) 116, 199, 797, 834, 1440, 1478
PspGI CCWGG 6 cut(s) 116, 199, 797, 834, 1440, 1478
PspN4I GGNNCC 1 cut(s) 840
PspPI GGNCC 2 cut(s) 197, 559
PstI CTGCAG 1 cut(s) 354
PsuI RGATCY 3 cut(s) 203, 758, 838
RsaI GTAC 4 cut(s) 279, 1122, 1167, 1388
RsaNI GTAC 4 cut(s) 278, 1121, 1166, 1387
SalI GTCGAC 1 cut(s) 1033
SaqAI TTAA 6 cut(s) 228, 303, 357, 780, 1335, 1344
Sau3AI GATC 6 cut(s) 203, 625, 758, 838, 862, 1086
Sau96I GGNCC 2 cut(s) 197, 559
SbfI CCTGCAGG 1 cut(s) 354
ScaI AGTACT 2 cut(s) 1167, 1388
SchI GAGTC 3 cut(s) 1030, 1040, 1183
ScrFI CCNGG 8 cut(s) 118, 201, 545, 546, 799, 836, 1442, 1480
SdaI CCTGCAGG 1 cut(s) 354
SfaNI GCATC 5 cut(s) 39, 604, 877, 1017, 1171
SfcI CTRYAG 3 cut(s) 350, 387, 426
SinI GGWCC 1 cut(s) 559
SmaI CCCGGG 1 cut(s) 546
SmlI CTYRAG 2 cut(s) 590, 767
SmoI CTYRAG 2 cut(s) 590, 767
Sse8387I CCTGCAGG 1 cut(s) 354
Sse9I AATT 7 cut(s) 60, 229, 375, 438, 1072, 1228, 1448
SseBI AGGCCT 1 cut(s) 1104
SsiI CCGC 1 cut(s) 1415
StuI AGGCCT 1 cut(s) 1104
StyD4I CCNGG 8 cut(s) 116, 199, 543, 544, 797, 834, 1440, 1478
StyI CCWWGG 1 cut(s) 44
TaaI ACNGT 5 cut(s) 667, 729, 939, 966, 1462
TaiI ACGT 1 cut(s) 1022
TaqI TCGA 3 cut(s) 628, 1034, 1267
TasI AATT 7 cut(s) 60, 229, 375, 438, 1072, 1228, 1448
TatI WGTACW 3 cut(s) 277, 1165, 1386
TfiI GAWTC 2 cut(s) 947, 1433
Tru1I TTAA 6 cut(s) 228, 303, 357, 780, 1335, 1344
Tru9I TTAA 6 cut(s) 228, 303, 357, 780, 1335, 1344
TscAI CASTG 3 cut(s) 670, 969, 1140
TspDTI ATGAA 5 cut(s) 450, 633, 708, 1164, 1446
TspMI CCCGGG 1 cut(s) 544
TspRI CASTG 3 cut(s) 670, 969, 1140
VpaK11BI GGWCC 1 cut(s) 559
VspI ATTAAT 1 cut(s) 228
XagI CCTNNNNNAGG 1 cut(s) 387
XapI RAATTY 1 cut(s) 438
XcmI CCANNNNNNNNNTGG 2 cut(s) 42, 124
XmaI CCCGGG 1 cut(s) 544
XmiI GTMKAC 2 cut(s) 310, 1034
XmnI GAANNNNTTC 1 cut(s) 1142
ZrmI AGTACT 2 cut(s) 1167, 1388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.