DEAD-box ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G15850 |
| fragaria_vesca | FvH4_3g05121 FvH4_3g05121 |
| malus_domestica | MD05G1280500.v1.1 |
| prunus_persica | Prupe.4G084900_v2.0.a1 Prupe.4G084900_v2.0.a1 Prupe.4G084900_v2.0.a1 Prupe.4G084900_v2.0.a1 |
| pyrus_communis | pycom05g26080 |
| rosa_chinensis | RchiOBHm_Chr5g0014641 |
| rosa_laevigata | RLG00000032134 |
| rosa_multiflora | Rmu_sc0000120.1_g000019 |
| rosa_roxburghii | Rroxscaffold_1G00061820 |
| rosa_rugosa | Rorug05G0019900 Rorug05G0020000 |
| rosa_samantha | Rh5AG115600 Rh5BG112200 Rh5CG123800 Rh5DG112000 |
| rosa_wichuraiana | Rw5G009980 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 253 |
| AcsI | RAATTY | 1 cut(s) | 373 |
| AcuI | CTGAAG | 4 cut(s) | 209, 213, 270, 380 |
| AgsI | TTSAA | 1 cut(s) | 379 |
| AlwI | GGATC | 1 cut(s) | 253 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 52 |
| ApeKI | GCWGC | 1 cut(s) | 281 |
| ApoI | RAATTY | 1 cut(s) | 373 |
| BbvI | GCAGC | 1 cut(s) | 268 |
| BccI | CCATC | 1 cut(s) | 394 |
| BfmI | CTRYAG | 2 cut(s) | 282, 411 |
| BisI | GCNGC | 1 cut(s) | 282 |
| BlsI | GCNGC | 1 cut(s) | 283 |
| BpuEI | CTTGAG | 1 cut(s) | 140 |
| BsaBI | GATNNNNATC | 2 cut(s) | 108, 213 |
| Bse1I | ACTGG | 2 cut(s) | 57, 238 |
| Bse8I | GATNNNNATC | 2 cut(s) | 108, 213 |
| BseJI | GATNNNNATC | 2 cut(s) | 108, 213 |
| BseNI | ACTGG | 2 cut(s) | 57, 238 |
| BseXI | GCAGC | 1 cut(s) | 268 |
| BslFI | GGGAC | 1 cut(s) | 271 |
| BsmFI | GGGAC | 1 cut(s) | 271 |
| Bsp143I | GATC | 4 cut(s) | 109, 214, 245, 349 |
| BspMAI | CTGCAG | 2 cut(s) | 286, 415 |
| BspPI | GGATC | 1 cut(s) | 253 |
| BspQI | GCTCTTC | 2 cut(s) | 55, 160 |
| BsrI | ACTGG | 2 cut(s) | 57, 238 |
| BssMI | GATC | 4 cut(s) | 109, 214, 245, 349 |
| Bst4CI | ACNGT | 1 cut(s) | 12 |
| Bst6I | CTCTTC | 2 cut(s) | 55, 160 |
| BstDEI | CTNAG | 1 cut(s) | 137 |
| BstKTI | GATC | 4 cut(s) | 112, 217, 248, 352 |
| BstMBI | GATC | 4 cut(s) | 109, 214, 245, 349 |
| BstSFI | CTRYAG | 2 cut(s) | 282, 411 |
| BstV1I | GCAGC | 1 cut(s) | 268 |
| BstX2I | RGATCY | 1 cut(s) | 245 |
| BstYI | RGATCY | 1 cut(s) | 245 |
| BtsIMutI | CAGTG | 1 cut(s) | 50 |
| CaiI | CAGNNNCTG | 1 cut(s) | 52 |
| CviJI | RGCY | 4 cut(s) | 65, 98, 170, 203 |
| CviKI_1 | RGCY | 4 cut(s) | 65, 98, 170, 203 |
| DdeI | CTNAG | 1 cut(s) | 137 |
| DpnI | GATC | 4 cut(s) | 111, 216, 247, 351 |
| DpnII | GATC | 4 cut(s) | 109, 214, 245, 349 |
| Eam1104I | CTCTTC | 2 cut(s) | 55, 160 |
| EarI | CTCTTC | 2 cut(s) | 55, 160 |
| Eco57I | CTGAAG | 4 cut(s) | 209, 213, 270, 380 |
| FaiI | YATR | 6 cut(s) | 15, 21, 85, 302, 332, 348 |
| FaqI | GGGAC | 1 cut(s) | 271 |
| Fnu4HI | GCNGC | 1 cut(s) | 282 |
| Fsp4HI | GCNGC | 1 cut(s) | 282 |
| GluI | GCNGC | 1 cut(s) | 282 |
| HinfI | GANTC | 1 cut(s) | 142 |
| Hpy166II | GTNNAC | 3 cut(s) | 116, 221, 356 |
| Hpy188I | TCNGA | 2 cut(s) | 193, 250 |
| Hpy188III | TCNNGA | 4 cut(s) | 101, 206, 227, 341 |
| Hpy8I | GTNNAC | 3 cut(s) | 116, 221, 356 |
| HpyAV | CCTTC | 1 cut(s) | 355 |
| HpyCH4III | ACNGT | 1 cut(s) | 12 |
| HpyCH4V | TGCA | 4 cut(s) | 46, 151, 284, 413 |
| HpyF3I | CTNAG | 1 cut(s) | 137 |
| Kzo9I | GATC | 4 cut(s) | 109, 214, 245, 349 |
| LguI | GCTCTTC | 2 cut(s) | 55, 160 |
| LpnPI | CCDG | 3 cut(s) | 38, 212, 251 |
| Lsp1109I | GCAGC | 1 cut(s) | 268 |
| MaeIII | GTNAC | 3 cut(s) | 48, 313, 403 |
| MalI | GATC | 4 cut(s) | 111, 216, 247, 351 |
| MboI | GATC | 4 cut(s) | 109, 214, 245, 349 |
| MboII | GAAGA | 4 cut(s) | 17, 72, 177, 206 |
| MflI | RGATCY | 1 cut(s) | 245 |
| MluCI | AATT | 4 cut(s) | 92, 132, 197, 373 |
| MnlI | CCTC | 1 cut(s) | 115 |
| MseI | TTAA | 3 cut(s) | 24, 276, 306 |
| NdeII | GATC | 4 cut(s) | 109, 214, 245, 349 |
| NmuCI | GTSAC | 2 cut(s) | 48, 403 |
| PciSI | GCTCTTC | 2 cut(s) | 55, 160 |
| PfeI | GAWTC | 1 cut(s) | 142 |
| PkrI | GCNGC | 1 cut(s) | 283 |
| PstI | CTGCAG | 2 cut(s) | 286, 415 |
| PstNI | CAGNNNCTG | 1 cut(s) | 52 |
| PsuI | RGATCY | 1 cut(s) | 245 |
| SapI | GCTCTTC | 2 cut(s) | 55, 160 |
| SaqAI | TTAA | 3 cut(s) | 24, 276, 306 |
| SatI | GCNGC | 1 cut(s) | 282 |
| Sau3AI | GATC | 4 cut(s) | 109, 214, 245, 349 |
| SetI | ASST | 1 cut(s) | 320 |
| SfcI | CTRYAG | 2 cut(s) | 282, 411 |
| SgeI | CNNG | 9 cut(s) | 65, 113, 131, 218, 239, 250, 284, 331, 353 |
| SmlI | CTYRAG | 1 cut(s) | 119 |
| SmoI | CTYRAG | 1 cut(s) | 119 |
| Sse9I | AATT | 4 cut(s) | 92, 132, 197, 373 |
| TaaI | ACNGT | 1 cut(s) | 12 |
| TaqI | TCGA | 1 cut(s) | 207 |
| TasI | AATT | 4 cut(s) | 92, 132, 197, 373 |
| TfiI | GAWTC | 1 cut(s) | 142 |
| Tru1I | TTAA | 3 cut(s) | 24, 276, 306 |
| Tru9I | TTAA | 3 cut(s) | 24, 276, 306 |
| TscAI | CASTG | 1 cut(s) | 57 |
| TseFI | GTSAC | 2 cut(s) | 48, 403 |
| TseI | GCWGC | 1 cut(s) | 281 |
| Tsp45I | GTSAC | 2 cut(s) | 48, 403 |
| TspRI | CASTG | 1 cut(s) | 57 |
| XapI | RAATTY | 1 cut(s) | 373 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 298 |