Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007732

Physical Location & Seq

Genomic Coordinates Forward (+)

9012552 .. 9016179

Gene Structure 3628 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G15880.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGGGTGCCGTAGCGATCAATCGTAAACGCAGCGACGAATCCTTCAATTTCATTAATCAACAATCAACCAACCCTTTACGAAATTCACCGTATTTCCAAGCTTCCAAGAAACGAAGATTCTCATTCGCTATGTCTGAAGATTCTGGTAAGCCAGCGTCTTCAAACCCAACAATTTCGAGGATTTCAAGGTACCCTGATGCTAAAGCTCCTCTTAGACGAGAGATTCATGCTCCTAGTAGAGGAATTCTTAGATATGGAAAGGCAAAATCTAATGATTACTGCGAAAAGGACGCAAATTTCTTTGTTCGTAAGTATGATGATGCAAAGAGATCAGCTTTGGAAGCTTTGAGATTCGTTAATAAAGGTAAAGACTTTGTTGATTTGGGTGATGAGGTTGAAAAGGAGGAAGTTGTTTCTGATGATTCAAGTGTTCAAGCAATTGAAGTTATTGATTGTGATGATGATGAGGAGAAGAAGAATCTTCAGCCTTCGTTTTCTTCTGGTGTTACTGATGTTAAGAAAGGGGAGAACTTTAGAGTTGAGGATACTAGTATGATGCTGGATTCGTTGTCGTTAGATAGAGATGTCGATAATGATGCTTCGAGCCTCGAAGCTTATAGAAAGCTTATGCAAAGTGCGGAGAAGAGGAATTCAAAGTTGGAAGCTTTGGGTTTTGAGATTGTGTTGAATGAGAAGAAGTTGTCACTGCTGCGTCAGTCTCGCCCAAAGACTGTGGAAAAGCGTGTTGAGGTGCCTCGTGAACCTTTTATTCCTCTCACAGAAGATGAAGAGGCTGAAGTCTACCGTGCCTTTTCTGGGAGAAATAGAAGGAAGGTCTTGGCTACTCATGAAAACTCAAACATTGATATTACTGGAGAAGTTCTGCAATGCCTTACACCATCTGCATGGCTAAACGACGAGGTTATCAATGTCTACCTTGAACTACTCAAAGAAAGAGAAACTAGAGAGCCCAAAAAGTATTTGAAGTGTCACTACTTCAATACCTTTTTCTACAAAAAGCTGGTAAGCGATTCTGGTTATAATTTTAAAGCTGTCAGGAGATGGACTACGCAGAGAAAGTTGGGATATGCTCTTATTGACTGTGACATGATATTTGTTCCCATCCACAGGGGTGTGCATTGGACCTTGGCAGTAATTAACAACAGGGAAAGCAAGCTCTTGTATCTTGATTCACTGAATGGAGTTGATCCTATGATTCTGAATGCTCTGGCAAAATACATGGGTGATGAAGCAAATGAAAAAAGTGGAAAAAAGATTGATGCTAATTCGTGGGACATGGAATTTGTGGAAGACCTTCCCCAACAAAAGAATGGGTATGACTGTGGAATGTTTATGCTTAAGTACATCGATTTTTTCAGCAGAGGCCTGGGGCTATGTTTCAGCCAGGAACACATGCCATACTTCCGACTCAGAACAGCTAAAGAGATTCTGAGGCTACGAGCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009506 GO:0009909 GO:0009911 GO:0009987 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0030054 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0055044 GO:0065007 GO:0070011 GO:0070122 GO:0070137 GO:0070138 GO:0070139 GO:0070140 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

489

Amino Acids

56.43

Weight (kDa)

7.53

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	303 - 404	1.6e-24	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15880 AT4G15880
fragaria_vesca	FvH4_4g18241 FvH4_4g18241 FvH4_4g18241
malus_domestica	MD13G1167800.v1.1 MD16G1167200.v1.1
prunus_persica	Prupe.1G135200_v2.0.a1 Prupe.1G135200_v2.0.a1 Prupe.1G135200_v2.0.a1
pyrus_communis	pycom13g14350 pycom16g14120
rosa_chinensis	RchiOBHm_Chr4g0422391
rosa_laevigata	RLG00000007613
rosa_multiflora	Rmu_sc0040163.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364510
rosa_rugosa	Rorug04G0179800 Rorug04G0179900
rosa_samantha	Rh4AG239200 Rh4AG239600 Rh4BG242800 Rh4CG254200 Rh4DG238300
rosa_wichuraiana	Rw4G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1041
Acc65I	GGTACC	1 cut(s)	189
AccB1I	GGYRCC	3 cut(s)	5, 189, 751
AccI	GTMKAC	2 cut(s)	801, 933
AciI	CCGC	1 cut(s)	638
AclWI	GGATC	1 cut(s)	1202
AcsI	RAATTY	5 cut(s)	82, 243, 295, 649, 1301
AcuI	CTGAAG	3 cut(s)	156, 467, 816
AfaI	GTAC	2 cut(s)	191, 1364
AfiI	CCNNNNNNNGG	3 cut(s)	239, 816, 1128
AflII	CTTAAG	1 cut(s)	1358
AhlI	ACTAGT	1 cut(s)	548
AjnI	CCWGG	2 cut(s)	1386, 1404
AjuI	GAANNNNNNNTTGG	2 cut(s)	641, 673
AleI	CACNNNNGTG	1 cut(s)	1131
Alw26I	GTCTC	1 cut(s)	723
AlwI	GGATC	1 cut(s)	1202
AoxI	GGCC	1 cut(s)	1384
ApeKI	GCWGC	2 cut(s)	30, 709
ApoI	RAATTY	5 cut(s)	82, 243, 295, 649, 1301
ArsI	GACNNNNNNTTYG	4 cut(s)	1097, 1129, 1286, 1318
AseI	ATTAAT	1 cut(s)	54
Asp700I	GAANNNNTTC	1 cut(s)	1314
Asp718I	GGTACC	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	1143
AsuHPI	GGTGA	3 cut(s)	78, 398, 1256
AvaII	GGWCC	1 cut(s)	1143
BanI	GGYRCC	3 cut(s)	5, 189, 751
BanII	GRGCYC	1 cut(s)	972
BarI	GAAGNNNNNNTAC	2 cut(s)	977, 1009
BauI	CACGAG	1 cut(s)	756
BbsI	GAAGAC	2 cut(s)	150, 1317
BbvI	GCAGC	2 cut(s)	42, 696
BccI	CCATC	3 cut(s)	907, 1056, 1130
BcgI	CGANNNNNNTGC	2 cut(s)	578, 612
BciT130I	CCWGG	2 cut(s)	1388, 1406
BciVI	GTATCC	1 cut(s)	538
BcoDI	GTCTC	1 cut(s)	723
BcuI	ACTAGT	1 cut(s)	548
BfaI	CTAG	3 cut(s)	234, 549, 963
BfrI	CTTAAG	1 cut(s)	1358
BfuI	GTATCC	1 cut(s)	538
BisI	GCNGC	2 cut(s)	31, 710
BlsI	GCNGC	2 cut(s)	32, 711
Bme1390I	CCNGG	2 cut(s)	1388, 1406
Bme18I	GGWCC	1 cut(s)	1143
BmgT120I	GGNCC	1 cut(s)	1143
BmiI	GGNNCC	3 cut(s)	7, 191, 753
BmrFI	CCNGG	2 cut(s)	1388, 1406
BmsI	GCATC	5 cut(s)	187, 310, 546, 586, 1270
BpiI	GAAGAC	2 cut(s)	150, 1317
BpmI	CTGGAG	1 cut(s)	894
Bsa29I	ATCGAT	1 cut(s)	1368
BsaJI	CCNNGG	2 cut(s)	1146, 1387
Bsc4I	CCNNNNNNNGG	3 cut(s)	239, 816, 1128
Bse1I	ACTGG	1 cut(s)	877
Bse3DI	GCAATG	1 cut(s)	893
BseBI	CCWGG	2 cut(s)	1388, 1406
BseCI	ATCGAT	1 cut(s)	1368
BseDI	CCNNGG	2 cut(s)	1146, 1387
BseGI	GGATG	1 cut(s)	1122
BseLI	CCNNNNNNNGG	3 cut(s)	239, 816, 1128
BseMI	GCAATG	1 cut(s)	893
BseMII	CTCAG	2 cut(s)	1442, 1444
BseNI	ACTGG	1 cut(s)	877
BseRI	GAGGAG	2 cut(s)	198, 482
BseXI	GCAGC	2 cut(s)	42, 696
BshFI	GGCC	1 cut(s)	1386
BshNI	GGYRCC	3 cut(s)	5, 189, 751
BshVI	ATCGAT	1 cut(s)	1368
BslFI	GGGAC	1 cut(s)	1307
BslI	CCNNNNNNNGG	3 cut(s)	239, 816, 1128
BsmAI	GTCTC	1 cut(s)	723
BsmFI	GGGAC	1 cut(s)	1307
BsmI	GAATGC	1 cut(s)	1228
BsnI	GGCC	1 cut(s)	1386
Bsp1286I	GDGCHC	1 cut(s)	972
Bsp143I	GATC	3 cut(s)	15, 329, 1207
BspACI	CCGC	1 cut(s)	638
BspANI	GGCC	1 cut(s)	1386
BspCNI	CTCAG	2 cut(s)	1443, 1443
BspDI	ATCGAT	1 cut(s)	1368
BspHI	TCATGA	1 cut(s)	847
BspLI	GGNNCC	3 cut(s)	7, 191, 753
BspPI	GGATC	1 cut(s)	1202
BspT107I	GGYRCC	3 cut(s)	5, 189, 751
BspTI	CTTAAG	1 cut(s)	1358
BsrDI	GCAATG	1 cut(s)	893
BsrI	ACTGG	1 cut(s)	877
BssECI	CCNNGG	2 cut(s)	1146, 1387
BssMI	GATC	3 cut(s)	15, 329, 1207
BssSI	CACGAG	1 cut(s)	756
BssT1I	CCWWGG	1 cut(s)	1146
Bst2BI	CACGAG	1 cut(s)	756
Bst2UI	CCWGG	2 cut(s)	1388, 1406
Bst4CI	ACNGT	5 cut(s)	90, 733, 806, 1103, 1343
Bst6I	CTCTTC	2 cut(s)	638, 783
BstAFI	CTTAAG	1 cut(s)	1358
BstC8I	GCNNGC	2 cut(s)	153, 1175
BstDEI	CTNAG	4 cut(s)	212, 248, 1430, 1451
BstENI	CCTNNNNNAGG	1 cut(s)	237
BstF5I	GGATG	1 cut(s)	1122
BstKTI	GATC	3 cut(s)	18, 332, 1210
BstMAI	GTCTC	1 cut(s)	723
BstMBI	GATC	3 cut(s)	15, 329, 1207
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstNI	CCWGG	2 cut(s)	1388, 1406
BstNSI	RCATGY	1 cut(s)	1417
BstSCI	CCNGG	2 cut(s)	1386, 1404
BstV1I	GCAGC	2 cut(s)	42, 696
BstV2I	GAAGAC	2 cut(s)	150, 1317
BstXI	CCANNNNNNTGG	1 cut(s)	906
Bsu15I	ATCGAT	1 cut(s)	1368
BsuI	GTATCC	1 cut(s)	538
BsuRI	GGCC	1 cut(s)	1386
BsuTUI	ATCGAT	1 cut(s)	1368
BtsCI	GGATG	1 cut(s)	1122
BtsI	GCAGTG	1 cut(s)	704
BtsIMutI	CAGTG	2 cut(s)	704, 1193
Cac8I	GCNNGC	2 cut(s)	153, 1175
CciI	TCATGA	1 cut(s)	847
Cfr13I	GGNCC	1 cut(s)	1143
ClaI	ATCGAT	1 cut(s)	1368
CseI	GACGC	3 cut(s)	144, 299, 701
Csp6I	GTAC	2 cut(s)	190, 1363
CspCI	CAANNNNNGTGG	2 cut(s)	714, 749
CviAII	CATG	7 cut(s)	227, 848, 906, 1108, 1240, 1297, 1414
CviQI	GTAC	2 cut(s)	190, 1363
DdeI	CTNAG	4 cut(s)	212, 248, 1430, 1451
DpnI	GATC	3 cut(s)	17, 331, 1209
DpnII	GATC	3 cut(s)	15, 329, 1207
DraI	TTTAAA	1 cut(s)	1048
Eam1104I	CTCTTC	2 cut(s)	638, 783
EarI	CTCTTC	2 cut(s)	638, 783
Eco130I	CCWWGG	1 cut(s)	1146
Eco147I	AGGCCT	1 cut(s)	1386
Eco24I	GRGCYC	1 cut(s)	972
Eco47I	GGWCC	1 cut(s)	1143
Eco57I	CTGAAG	3 cut(s)	156, 467, 816
EcoNI	CCTNNNNNAGG	1 cut(s)	237
EcoRI	GAATTC	2 cut(s)	243, 649
EcoRII	CCWGG	2 cut(s)	1386, 1404
EcoT14I	CCWWGG	1 cut(s)	1146
EcoT38I	GRGCYC	1 cut(s)	972
ErhI	CCWWGG	1 cut(s)	1146
FaeI	CATG	7 cut(s)	230, 851, 909, 1111, 1243, 1300, 1417
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FaqI	GGGAC	1 cut(s)	1307
FatI	CATG	7 cut(s)	226, 847, 905, 1107, 1239, 1296, 1413
FblI	GTMKAC	2 cut(s)	801, 933
Fnu4HI	GCNGC	2 cut(s)	31, 710
FokI	GGATG	1 cut(s)	1109
FriOI	GRGCYC	1 cut(s)	972
Fsp4HI	GCNGC	2 cut(s)	31, 710
FspBI	CTAG	3 cut(s)	234, 549, 963
GluI	GCNGC	2 cut(s)	31, 710
GsuI	CTGGAG	1 cut(s)	894
HaeIII	GGCC	1 cut(s)	1386
HgaI	GACGC	3 cut(s)	144, 299, 701
Hin1II	CATG	7 cut(s)	230, 851, 909, 1111, 1243, 1300, 1417
HindIII	AAGCTT	5 cut(s)	99, 342, 612, 623, 663
HphI	GGTGA	3 cut(s)	78, 398, 1256
Hpy166II	GTNNAC	4 cut(s)	26, 761, 802, 934
Hpy188I	TCNGA	6 cut(s)	136, 418, 1221, 1427, 1433, 1452
Hpy188III	TCNNGA	4 cut(s)	758, 848, 1057, 1187
Hpy8I	GTNNAC	4 cut(s)	26, 761, 802, 934
Hpy99I	CGWCG	2 cut(s)	38, 920
HpyAV	CCTTC	5 cut(s)	52, 498, 822, 826, 1325
HpyCH4III	ACNGT	5 cut(s)	90, 733, 806, 1103, 1343
HpyCH4V	TGCA	5 cut(s)	323, 631, 886, 905, 1138
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
HpyF3I	CTNAG	4 cut(s)	212, 248, 1430, 1451
Hsp92II	CATG	7 cut(s)	230, 851, 909, 1111, 1243, 1300, 1417
KpnI	GGTACC	1 cut(s)	193
Kzo9I	GATC	3 cut(s)	15, 329, 1207
LmnI	GCTCC	2 cut(s)	211, 235
Lsp1109I	GCAGC	2 cut(s)	42, 696
LweI	GCATC	5 cut(s)	187, 310, 546, 586, 1270
MaeI	CTAG	3 cut(s)	234, 549, 963
MaeIII	GTNAC	4 cut(s)	505, 702, 989, 1103
MalI	GATC	3 cut(s)	17, 331, 1209
MboI	GATC	3 cut(s)	15, 329, 1207
MfeI	CAATTG	1 cut(s)	438
MhlI	GDGCHC	1 cut(s)	972
MlyI	GAGTC	1 cut(s)	1422
MmeI	TCCRAC	2 cut(s)	639, 1450
MroXI	GAANNNNTTC	1 cut(s)	1314
MseI	TTAA	6 cut(s)	54, 357, 516, 1047, 1158, 1359
MslI	CAYNNNNRTG	2 cut(s)	904, 1131
MspCI	CTTAAG	1 cut(s)	1358
MspR9I	CCNGG	2 cut(s)	1388, 1406
MunI	CAATTG	1 cut(s)	438
Mva1269I	GAATGC	1 cut(s)	1228
MvaI	CCWGG	2 cut(s)	1388, 1406
MwoI	GCNNNNNNNGC	1 cut(s)	341
NdeII	GATC	3 cut(s)	15, 329, 1207
NlaIII	CATG	7 cut(s)	230, 851, 909, 1111, 1243, 1300, 1417
NlaIV	GGNNCC	3 cut(s)	7, 191, 753
NmuCI	GTSAC	3 cut(s)	702, 989, 1103
NspI	RCATGY	1 cut(s)	1417
OliI	CACNNNNGTG	1 cut(s)	1131
PagI	TCATGA	1 cut(s)	847
PceI	AGGCCT	1 cut(s)	1386
PctI	GAATGC	1 cut(s)	1228
PdmI	GAANNNNTTC	1 cut(s)	1314
PkrI	GCNGC	2 cut(s)	32, 711
PleI	GAGTC	1 cut(s)	1422
PpsI	GAGTC	1 cut(s)	1422
PshBI	ATTAAT	1 cut(s)	54
PsiI	TTATAA	1 cut(s)	1041
Psp6I	CCWGG	2 cut(s)	1386, 1404
PspGI	CCWGG	2 cut(s)	1386, 1404
PspN4I	GGNNCC	3 cut(s)	7, 191, 753
PspPI	GGNCC	1 cut(s)	1143
RsaI	GTAC	2 cut(s)	191, 1364
RsaNI	GTAC	2 cut(s)	190, 1363
RseI	CAYNNNNRTG	2 cut(s)	904, 1131
SaqAI	TTAA	6 cut(s)	54, 357, 516, 1047, 1158, 1359
SatI	GCNGC	2 cut(s)	31, 710
Sau3AI	GATC	3 cut(s)	15, 329, 1207
Sau96I	GGNCC	1 cut(s)	1143
SchI	GAGTC	1 cut(s)	1422
ScrFI	CCNGG	2 cut(s)	1388, 1406
SduI	GDGCHC	1 cut(s)	972
SfaNI	GCATC	5 cut(s)	187, 310, 546, 586, 1270
SinI	GGWCC	1 cut(s)	1143
SmiMI	CAYNNNNRTG	2 cut(s)	904, 1131
SmlI	CTYRAG	1 cut(s)	1358
SmoI	CTYRAG	1 cut(s)	1358
SpeI	ACTAGT	1 cut(s)	548
SseBI	AGGCCT	1 cut(s)	1386
SsiI	CCGC	1 cut(s)	638
SspMI	CTAG	3 cut(s)	234, 549, 963
StuI	AGGCCT	1 cut(s)	1386
StyD4I	CCNGG	2 cut(s)	1386, 1404
StyI	CCWWGG	1 cut(s)	1146
TaaI	ACNGT	5 cut(s)	90, 733, 806, 1103, 1343
TaqI	TCGA	5 cut(s)	176, 588, 602, 609, 1368
TatI	WGTACW	1 cut(s)	1362
Tru1I	TTAA	6 cut(s)	54, 357, 516, 1047, 1158, 1359
Tru9I	TTAA	6 cut(s)	54, 357, 516, 1047, 1158, 1359
TscAI	CASTG	2 cut(s)	711, 1200
TseFI	GTSAC	3 cut(s)	702, 989, 1103
TseI	GCWGC	2 cut(s)	30, 709
Tsp45I	GTSAC	3 cut(s)	702, 989, 1103
TspDTI	ATGAA	6 cut(s)	40, 215, 801, 864, 1263, 1272
TspRI	CASTG	2 cut(s)	711, 1200
Vha464I	CTTAAG	1 cut(s)	1358
VpaK11BI	GGWCC	1 cut(s)	1143
VspI	ATTAAT	1 cut(s)	54
XagI	CCTNNNNNAGG	1 cut(s)	237
XapI	RAATTY	5 cut(s)	82, 243, 295, 649, 1301
XceI	RCATGY	1 cut(s)	1417
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1328
XmiI	GTMKAC	2 cut(s)	801, 933
XmnI	GAANNNNTTC	1 cut(s)	1314
XspI	CTAG	3 cut(s)	234, 549, 963

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.