Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040163.1

Orthogroup ID

OG0007732

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 856

Gene Structure 856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040163.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 700 bp

agctcgaattctcccttttccccctattctcacatttccaagcgacccagattattctcctcctcttcttcttcttcttcttctccgacgacgacgacgacccgacccgttttctcttctaaccgcgccgtcgccagggtctcccgctacccagccgcgcagctcccgttgcgtcgaattcacgcgcctgttaagcccgtaaagttcagctcctgctcctccggccgaggggaccagtcgggtgacgtcaccgtcatgggcaatttgttgcggcgttacgccaatgcgaagaatgaagctcttgccacgtgtaagagtaagaaaaggagggaggaggaggaggaggtgattcaattggatgaggaggatgatgatgatcagaatcgggtttcggaggattcgagcatcgaggaggtggtggatttaggggaggatgagccggatgtgcaggaattggagaccaagagggtgcgatgtgaagctcaggccacgcagccgtcggcttcttcggtggcttcggacttcaccacattgacagtgaataatacctgtttgaaagtggagagttcggagcagatgagggagctgctggccctgaatcccgaggatttgccgagttacaagaagttgattgaggagttggataggaagtctacgcccaaattgaaacaattgggtttcgaaatccaggtgaatgaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009506 GO:0009909 GO:0009911 GO:0009987 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0030054 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0055044 GO:0065007 GO:0070011 GO:0070122 GO:0070137 GO:0070138 GO:0070139 GO:0070140 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

233

Amino Acids

25.92

Weight (kDa)

5.25

Isoelectric Point (pI)

78.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15880 AT4G15880
fragaria_vesca	FvH4_4g18241 FvH4_4g18241 FvH4_4g18241
malus_domestica	MD13G1167800.v1.1 MD16G1167200.v1.1
prunus_persica	Prupe.1G135200_v2.0.a1 Prupe.1G135200_v2.0.a1 Prupe.1G135200_v2.0.a1
pyrus_communis	pycom13g14350 pycom16g14120
rosa_chinensis	RchiOBHm_Chr4g0422391
rosa_laevigata	RLG00000007613
rosa_multiflora	Rmu_sc0040163.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364510
rosa_rugosa	Rorug04G0179800 Rorug04G0179900
rosa_samantha	Rh4AG239200 Rh4AG239600 Rh4BG242800 Rh4CG254200 Rh4DG238300
rosa_wichuraiana	Rw4G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	251
AatII	GACGTC	1 cut(s)	249
AccI	GTMKAC	1 cut(s)	653
AccII	CGCG	3 cut(s)	126, 158, 185
AciI	CCGC	4 cut(s)	124, 145, 156, 271
AcoI	YGGCCR	1 cut(s)	223
AcsI	RAATTY	2 cut(s)	7, 177
AcvI	CACGTG	1 cut(s)	309
AcyI	GRCGYC	1 cut(s)	246
AfiI	CCNNNNNNNGG	2 cut(s)	135, 228
AflIII	ACRYGT	1 cut(s)	308
AgsI	TTSAA	3 cut(s)	353, 556, 667
AjnI	CCWGG	2 cut(s)	134, 687
AluBI	AGCT	6 cut(s)	3, 163, 210, 299, 482, 586
AluI	AGCT	6 cut(s)	3, 163, 210, 299, 482, 586
Alw26I	GTCTC	2 cut(s)	145, 452
AlwNI	CAGNNNCTG	1 cut(s)	213
Ama87I	CYCGRG	1 cut(s)	602
AoxI	GGCC	3 cut(s)	223, 486, 591
ApeKI	GCWGC	3 cut(s)	160, 493, 586
ApoI	RAATTY	2 cut(s)	7, 177
AspLEI	GCGC	3 cut(s)	128, 160, 187
AspS9I	GGNCC	2 cut(s)	232, 592
AsuHPI	GGTGA	4 cut(s)	241, 254, 358, 517
AsuII	TTCGAA	1 cut(s)	681
AvaI	CYCGRG	1 cut(s)	602
AvaII	GGWCC	1 cut(s)	232
BbrPI	CACGTG	1 cut(s)	309
BbvI	GCAGC	3 cut(s)	172, 505, 573
BceAI	ACGGC	2 cut(s)	113, 481
BciT130I	CCWGG	2 cut(s)	136, 689
BclI	TGATCA	1 cut(s)	376
BcoDI	GTCTC	2 cut(s)	145, 452
BisI	GCNGC	5 cut(s)	156, 161, 272, 494, 587
BlsI	GCNGC	5 cut(s)	157, 162, 273, 495, 588
Bme1390I	CCNGG	2 cut(s)	136, 689
Bme18I	GGWCC	1 cut(s)	232
BmeT110I	CYCGRG	1 cut(s)	602
BmgT120I	GGNCC	2 cut(s)	232, 592
BmiI	GGNNCC	1 cut(s)	233
BmrFI	CCNGG	2 cut(s)	136, 689
BmsI	GCATC	1 cut(s)	414
Bpu10I	CCTNAGC	1 cut(s)	483
Bpu14I	TTCGAA	1 cut(s)	681
BsaAI	YACGTR	1 cut(s)	309
BsaBI	GATNNNNATC	2 cut(s)	375, 381
BsaHI	GRCGYC	1 cut(s)	246
BsaI	GGTCTC	2 cut(s)	145, 452
BsaJI	CCNNGG	3 cut(s)	135, 226, 603
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 228
Bse1I	ACTGG	1 cut(s)	235
Bse8I	GATNNNNATC	2 cut(s)	375, 381
BseBI	CCWGG	2 cut(s)	136, 689
BseDI	CCNNGG	3 cut(s)	135, 226, 603
BseGI	GGATG	4 cut(s)	364, 373, 439, 448
BseJI	GATNNNNATC	2 cut(s)	375, 381
BseLI	CCNNNNNNNGG	2 cut(s)	135, 228
BseMII	CTCAG	1 cut(s)	497
BseNI	ACTGG	1 cut(s)	235
BseX3I	CGGCCG	1 cut(s)	223
BseXI	GCAGC	3 cut(s)	172, 505, 573
BseYI	CCCAGC	1 cut(s)	151
BsgI	GTGCAG	1 cut(s)	467
Bsh1236I	CGCG	3 cut(s)	126, 158, 185
Bsh1285I	CGRYCG	1 cut(s)	226
BshFI	GGCC	3 cut(s)	225, 488, 593
BsiEI	CGRYCG	1 cut(s)	226
BsiHKCI	CYCGRG	1 cut(s)	602
BsiSI	CCGG	2 cut(s)	222, 440
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	2 cut(s)	135, 228
BsmAI	GTCTC	2 cut(s)	145, 452
BsmFI	GGGAC	1 cut(s)	245
BsnI	GGCC	3 cut(s)	225, 488, 593
Bso31I	GGTCTC	2 cut(s)	145, 452
BsoBI	CYCGRG	1 cut(s)	602
Bsp119I	TTCGAA	1 cut(s)	681
Bsp143I	GATC	1 cut(s)	376
BspACI	CCGC	4 cut(s)	124, 145, 156, 271
BspANI	GGCC	3 cut(s)	225, 488, 593
BspCNI	CTCAG	1 cut(s)	496
BspFNI	CGCG	3 cut(s)	126, 158, 185
BspLI	GGNNCC	1 cut(s)	233
BspT104I	TTCGAA	1 cut(s)	681
BspTNI	GGTCTC	2 cut(s)	145, 452
BsrI	ACTGG	1 cut(s)	235
BssECI	CCNNGG	3 cut(s)	135, 226, 603
BssMI	GATC	1 cut(s)	376
BssNI	GRCGYC	1 cut(s)	246
Bst2UI	CCWGG	2 cut(s)	136, 689
Bst4CI	ACNGT	2 cut(s)	253, 538
Bst6I	CTCTTC	2 cut(s)	70, 121
BstACI	GRCGYC	1 cut(s)	246
BstBAI	YACGTR	1 cut(s)	309
BstBI	TTCGAA	1 cut(s)	681
BstC8I	GCNNGC	1 cut(s)	591
BstDEI	CTNAG	1 cut(s)	483
BstF5I	GGATG	4 cut(s)	364, 373, 439, 448
BstFNI	CGCG	3 cut(s)	126, 158, 185
BstHHI	GCGC	3 cut(s)	128, 160, 187
BstKTI	GATC	1 cut(s)	379
BstMAI	GTCTC	2 cut(s)	145, 452
BstMBI	GATC	1 cut(s)	376
BstMCI	CGRYCG	1 cut(s)	226
BstMWI	GCNNNNNNNGC	4 cut(s)	169, 193, 222, 445
BstNI	CCWGG	2 cut(s)	136, 689
BstSCI	CCNGG	2 cut(s)	134, 687
BstUI	CGCG	3 cut(s)	126, 158, 185
BstV1I	GCAGC	3 cut(s)	172, 505, 573
BstZI	CGGCCG	1 cut(s)	223
BsuRI	GGCC	3 cut(s)	225, 488, 593
BtgZI	GCGATG	1 cut(s)	487
BtsCI	GGATG	4 cut(s)	364, 373, 439, 448
BtsIMutI	CAGTG	1 cut(s)	543
Cac8I	GCNNGC	1 cut(s)	591
CaiI	CAGNNNCTG	1 cut(s)	213
CfoI	GCGC	3 cut(s)	128, 160, 187
Cfr13I	GGNCC	2 cut(s)	232, 592
CseI	GACGC	1 cut(s)	161
CviAII	CATG	1 cut(s)	256
DdeI	CTNAG	1 cut(s)	483
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
DrdI	GACNNNNNNGTC	1 cut(s)	251
DseDI	GACNNNNNNGTC	1 cut(s)	251
EaeI	YGGCCR	1 cut(s)	223
EagI	CGGCCG	1 cut(s)	223
Eam1104I	CTCTTC	2 cut(s)	70, 121
EarI	CTCTTC	2 cut(s)	70, 121
EclXI	CGGCCG	1 cut(s)	223
Eco31I	GGTCTC	2 cut(s)	145, 452
Eco47I	GGWCC	1 cut(s)	232
Eco52I	CGGCCG	1 cut(s)	223
Eco72I	CACGTG	1 cut(s)	309
Eco88I	CYCGRG	1 cut(s)	602
EcoRI	GAATTC	2 cut(s)	7, 177
EcoRII	CCWGG	2 cut(s)	134, 687
FaeI	CATG	1 cut(s)	259
FaiI	YATR	1 cut(s)	257
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	1 cut(s)	255
FauI	CCCGC	1 cut(s)	152
FbaI	TGATCA	1 cut(s)	376
FblI	GTMKAC	1 cut(s)	653
Fnu4HI	GCNGC	5 cut(s)	156, 161, 272, 494, 587
FokI	GGATG	4 cut(s)	371, 380, 446, 455
Fsp4HI	GCNGC	5 cut(s)	156, 161, 272, 494, 587
GlaI	GCGC	3 cut(s)	127, 159, 186
GluI	GCNGC	5 cut(s)	156, 161, 272, 494, 587
GsaI	CCCAGC	1 cut(s)	155
HaeIII	GGCC	3 cut(s)	225, 488, 593
HapII	CCGG	2 cut(s)	222, 440
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	3 cut(s)	128, 160, 187
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	1 cut(s)	259
Hin6I	GCGC	3 cut(s)	126, 158, 185
HinP1I	GCGC	3 cut(s)	126, 158, 185
HinfI	GANTC	4 cut(s)	349, 382, 398, 598
HpaII	CCGG	2 cut(s)	222, 440
HphI	GGTGA	4 cut(s)	241, 254, 358, 517
Hpy166II	GTNNAC	1 cut(s)	654
Hpy188I	TCNGA	5 cut(s)	87, 381, 394, 520, 571
Hpy188III	TCNNGA	1 cut(s)	602
Hpy8I	GTNNAC	1 cut(s)	654
Hpy99I	CGWCG	7 cut(s)	91, 94, 97, 100, 134, 177, 502
HpyCH4III	ACNGT	2 cut(s)	253, 538
HpyCH4IV	ACGT	2 cut(s)	246, 308
HpyCH4V	TGCA	1 cut(s)	448
HpyF10VI	GCNNNNNNNGC	4 cut(s)	169, 193, 222, 445
HpyF3I	CTNAG	1 cut(s)	483
HpySE526I	ACGT	2 cut(s)	246, 308
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	1 cut(s)	259
HspAI	GCGC	3 cut(s)	126, 158, 185
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	1 cut(s)	376
LmnI	GCTCC	5 cut(s)	168, 215, 221, 571, 583
Lsp1109I	GCAGC	3 cut(s)	172, 505, 573
LweI	GCATC	1 cut(s)	414
MaeII	ACGT	2 cut(s)	246, 308
MaeIII	GTNAC	4 cut(s)	242, 247, 275, 617
MalI	GATC	1 cut(s)	378
MboI	GATC	1 cut(s)	376
MboII	GAAGA	9 cut(s)	57, 60, 63, 66, 69, 72, 108, 301, 498
MfeI	CAATTG	2 cut(s)	353, 671
MluCI	AATT	7 cut(s)	7, 177, 262, 353, 452, 662, 671
MmeI	TCCRAC	2 cut(s)	110, 621
MseI	TTAA	1 cut(s)	192
MslI	CAYNNNNRTG	1 cut(s)	254
MspI	CCGG	2 cut(s)	222, 440
MspR9I	CCNGG	2 cut(s)	136, 689
MunI	CAATTG	2 cut(s)	353, 671
MvaI	CCWGG	2 cut(s)	136, 689
MvnI	CGCG	3 cut(s)	126, 158, 185
MwoI	GCNNNNNNNGC	4 cut(s)	169, 193, 222, 445
NdeII	GATC	1 cut(s)	376
NlaIII	CATG	1 cut(s)	259
NlaIV	GGNNCC	1 cut(s)	233
NmeAIII	GCCGAG	2 cut(s)	251, 639
NmuCI	GTSAC	2 cut(s)	242, 247
NspV	TTCGAA	1 cut(s)	681
PcsI	WCGNNNNNNNCGW	2 cut(s)	95, 398
PfeI	GAWTC	4 cut(s)	349, 382, 398, 598
PkrI	GCNGC	5 cut(s)	157, 162, 273, 495, 588
PmaCI	CACGTG	1 cut(s)	309
PmlI	CACGTG	1 cut(s)	309
Ppu21I	YACGTR	1 cut(s)	309
Psp6I	CCWGG	2 cut(s)	134, 687
PspCI	CACGTG	1 cut(s)	309
PspFI	CCCAGC	1 cut(s)	151
PspGI	CCWGG	2 cut(s)	134, 687
PspN4I	GGNNCC	1 cut(s)	233
PspPI	GGNCC	2 cut(s)	232, 592
PstNI	CAGNNNCTG	1 cut(s)	213
RseI	CAYNNNNRTG	1 cut(s)	254
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	5 cut(s)	156, 161, 272, 494, 587
Sau3AI	GATC	1 cut(s)	376
Sau96I	GGNCC	2 cut(s)	232, 592
ScrFI	CCNGG	2 cut(s)	136, 689
SfaNI	GCATC	1 cut(s)	414
SfuI	TTCGAA	1 cut(s)	681
SinI	GGWCC	1 cut(s)	232
SmiMI	CAYNNNNRTG	1 cut(s)	254
Sse9I	AATT	7 cut(s)	7, 177, 262, 353, 452, 662, 671
SsiI	CCGC	4 cut(s)	124, 145, 156, 271
StyD4I	CCNGG	2 cut(s)	134, 687
TaaI	ACNGT	2 cut(s)	253, 538
TaiI	ACGT	2 cut(s)	249, 311
TaqI	TCGA	5 cut(s)	5, 175, 401, 408, 681
TasI	AATT	7 cut(s)	7, 177, 262, 353, 452, 662, 671
TauI	GCSGC	2 cut(s)	158, 274
TfiI	GAWTC	4 cut(s)	349, 382, 398, 598
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	1 cut(s)	543
TseFI	GTSAC	2 cut(s)	242, 247
TseI	GCWGC	3 cut(s)	160, 493, 586
Tsp45I	GTSAC	2 cut(s)	242, 247
TspDTI	ATGAA	1 cut(s)	309
TspRI	CASTG	1 cut(s)	543
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	2 cut(s)	7, 177
XmiI	GTMKAC	1 cut(s)	653
ZraI	GACGTC	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.