Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007732

Physical Location & Seq

Genomic Coordinates Reverse (-)

10359803 .. 10360995

Gene Structure 1193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g14350.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGGAGCGCTAACCAGCAACCGTAAGCGAGGGGACGAGTGTTTGAGCTTCAGTTGTGCGCACCCATCTCCGAATTTGCCTAATTTTCAAAGCTCGAAGCGACCCAGATTGTCTCACGTGAATCAGAGCCCGAACCAACTCATCGTCTCGTCTAAAAGCGCCAGTTCGAGGCTCTCTCGGTACCCGGATATAAAGCCCCCATTGCCTAGAGTTCACGCCCCTTGCAGAACACAAAAATTCGGGTCCTTTCGTGGTTTGAGTCCGAAAACTAGAGGGGTTCCTGAAGAGCGGTCGATGGGCAATGTACCGAGTAACCGTTTGGACAAGGCAAAGAACGCCGCCTTCGGTGCCTTTCGGTATTCGAGCAAGGACAAGGAGGTGATTGAATTGGATAAGGAGGTTGAAGATGATCGGGTTTCCGAGGATTCAAGCATAGAAGAAGTTGTGGCTATAGAGGAAGATGACCAAGAAGGGCCTTCTGTGGTGGATTATGGGCAGGAATTGGATACGAAGATGGTGGATTATGGAACTCAGGCTACTCATCCATCGGCTTCTTCAGTGGTTTCAGACTTGACCACAACTACGAATACTGCTTTCAAAGAGGACAGTGCAGGGAAGATGTTGGACTCACTGACGCTGAATCGTGAGGCGGGTGTGCCAAGTAAGGCAGCATACAAGCTGTTGATTGAGAGTGTAGAGAGGCGGGCTCCGAAACTGAAATATTTGGATGTCCAAATTGACTTCCATTGGAAGAAACGGTCTATGCTTGAATCGCTGCGTCCACAAAAGAAACCAGTGGAGGTTGTGCCCGTTGAACCATTTGTCCCTCTTAGAAAGGAGGAAGTGGCGGAGATTGAGCAAGCATTTTCTTCCTCTAACCGAGGATCTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009506 GO:0009909 GO:0009911 GO:0009987 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0030054 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0055044 GO:0065007 GO:0070011 GO:0070122 GO:0070137 GO:0070138 GO:0070139 GO:0070140 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

298

Amino Acids

33.08

Weight (kDa)

7.69

Isoelectric Point (pI)

62.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15880 AT4G15880
fragaria_vesca	FvH4_4g18241 FvH4_4g18241 FvH4_4g18241
malus_domestica	MD13G1167800.v1.1 MD16G1167200.v1.1
prunus_persica	Prupe.1G135200_v2.0.a1 Prupe.1G135200_v2.0.a1 Prupe.1G135200_v2.0.a1
pyrus_communis	pycom13g14350 pycom16g14120
rosa_chinensis	RchiOBHm_Chr4g0422391
rosa_laevigata	RLG00000007613
rosa_multiflora	Rmu_sc0040163.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364510
rosa_rugosa	Rorug04G0179800 Rorug04G0179900
rosa_samantha	Rh4AG239200 Rh4AG239600 Rh4BG242800 Rh4CG254200 Rh4DG238300
rosa_wichuraiana	Rw4G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	60
Acc65I	GGTACC	1 cut(s)	180
AccB1I	GGYRCC	2 cut(s)	180, 347
AccBSI	CCGCTC	1 cut(s)	289
AciI	CCGC	5 cut(s)	289, 339, 650, 703, 848
AclWI	GGATC	1 cut(s)	892
AcsI	RAATTY	2 cut(s)	73, 236
AcuI	CTGAAG	3 cut(s)	34, 303, 540
AcvI	CACGTG	1 cut(s)	118
AfaI	GTAC	2 cut(s)	182, 306
AfeI	AGCGCT	1 cut(s)	9
AfiI	CCNNNNNNNGG	1 cut(s)	168
AgsI	TTSAA	7 cut(s)	89, 386, 404, 429, 598, 770, 815
AloI	GAACNNNNNNTCC	2 cut(s)	807, 839
AluBI	AGCT	3 cut(s)	48, 93, 679
AluI	AGCT	3 cut(s)	48, 93, 679
Alw26I	GTCTC	2 cut(s)	117, 151
AlwI	GGATC	1 cut(s)	892
Aor51HI	AGCGCT	1 cut(s)	9
AoxI	GGCC	1 cut(s)	473
ApeKI	GCWGC	2 cut(s)	668, 775
ApoI	RAATTY	2 cut(s)	73, 236
Asp718I	GGTACC	1 cut(s)	180
AspLEI	GCGC	3 cut(s)	10, 61, 161
AspS9I	GGNCC	2 cut(s)	243, 473
AsuC2I	CCSGG	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	391
AvaII	GGWCC	1 cut(s)	243
BaeGI	GKGCMC	1 cut(s)	810
BanI	GGYRCC	2 cut(s)	180, 347
BanII	GRGCYC	2 cut(s)	131, 709
BbrPI	CACGTG	1 cut(s)	118
BbvI	GCAGC	2 cut(s)	680, 762
BccI	CCATC	4 cut(s)	73, 289, 508, 553
BciVI	GTATCC	1 cut(s)	499
BcnI	CCSGG	1 cut(s)	185
BcoDI	GTCTC	2 cut(s)	117, 151
BfaI	CTAG	2 cut(s)	207, 270
BfmI	CTRYAG	1 cut(s)	450
BfoI	RGCGCY	2 cut(s)	11, 162
BfuI	GTATCC	1 cut(s)	499
BisI	GCNGC	3 cut(s)	339, 669, 776
BlsI	GCNGC	3 cut(s)	340, 670, 777
Bme1390I	CCNGG	1 cut(s)	185
Bme18I	GGWCC	1 cut(s)	243
BmgT120I	GGNCC	2 cut(s)	243, 473
BmiI	GGNNCC	5 cut(s)	182, 244, 279, 349, 708
BmrFI	CCNGG	1 cut(s)	185
BplI	GAGNNNNNCTC	4 cut(s)	160, 192, 691, 723
BpuMI	CCSGG	1 cut(s)	185
BsaAI	YACGTR	1 cut(s)	118
BsaJI	CCNNGG	2 cut(s)	420, 880
Bsc4I	CCNNNNNNNGG	1 cut(s)	168
Bse1I	ACTGG	2 cut(s)	162, 794
Bse3DI	GCAATG	2 cut(s)	200, 307
BseDI	CCNNGG	2 cut(s)	420, 880
BseGI	GGATG	2 cut(s)	541, 733
BseLI	CCNNNNNNNGG	1 cut(s)	168
BseMI	GCAATG	2 cut(s)	200, 307
BseMII	CTCAG	1 cut(s)	545
BseNI	ACTGG	2 cut(s)	162, 794
BseSI	GKGCMC	1 cut(s)	810
BseXI	GCAGC	2 cut(s)	680, 762
BsgI	GTGCAG	1 cut(s)	630
Bsh1285I	CGRYCG	1 cut(s)	293
BshFI	GGCC	1 cut(s)	475
BshNI	GGYRCC	2 cut(s)	180, 347
BsiEI	CGRYCG	1 cut(s)	293
BsiSI	CCGG	1 cut(s)	185
BslFI	GGGAC	2 cut(s)	47, 809
BslI	CCNNNNNNNGG	1 cut(s)	168
BsmAI	GTCTC	2 cut(s)	117, 151
BsmBI	CGTCTC	1 cut(s)	151
BsmFI	GGGAC	2 cut(s)	47, 809
BsnI	GGCC	1 cut(s)	475
Bsp1286I	GDGCHC	3 cut(s)	131, 709, 810
Bsp143I	GATC	2 cut(s)	409, 884
BspACI	CCGC	5 cut(s)	289, 339, 650, 703, 848
BspANI	GGCC	1 cut(s)	475
BspCNI	CTCAG	1 cut(s)	544
BspLI	GGNNCC	5 cut(s)	182, 244, 279, 349, 708
BspPI	GGATC	1 cut(s)	892
BspQI	GCTCTTC	1 cut(s)	279
BspT107I	GGYRCC	2 cut(s)	180, 347
BsrBI	CCGCTC	1 cut(s)	289
BsrDI	GCAATG	2 cut(s)	200, 307
BsrI	ACTGG	2 cut(s)	162, 794
BssECI	CCNNGG	2 cut(s)	420, 880
BssMI	GATC	2 cut(s)	409, 884
Bst4CI	ACNGT	4 cut(s)	23, 317, 608, 759
Bst6I	CTCTTC	1 cut(s)	279
BstBAI	YACGTR	1 cut(s)	118
BstC8I	GCNNGC	2 cut(s)	705, 861
BstDEI	CTNAG	2 cut(s)	531, 830
BstF5I	GGATG	2 cut(s)	541, 733
BstH2I	RGCGCY	2 cut(s)	11, 162
BstHHI	GCGC	3 cut(s)	10, 61, 161
BstKTI	GATC	2 cut(s)	412, 887
BstMAI	GTCTC	2 cut(s)	117, 151
BstMBI	GATC	2 cut(s)	409, 884
BstMCI	CGRYCG	1 cut(s)	293
BstMWI	GCNNNNNNNGC	4 cut(s)	202, 335, 347, 772
BstSCI	CCNGG	1 cut(s)	183
BstSFI	CTRYAG	1 cut(s)	450
BstSLI	GKGCMC	1 cut(s)	810
BstV1I	GCAGC	2 cut(s)	680, 762
BstX2I	RGATCY	1 cut(s)	884
BstYI	RGATCY	1 cut(s)	884
BsuI	GTATCC	1 cut(s)	499
BsuRI	GGCC	1 cut(s)	475
BtsCI	GGATG	2 cut(s)	541, 733
BtsIMutI	CAGTG	4 cut(s)	564, 613, 629, 801
Cac8I	GCNNGC	2 cut(s)	705, 861
CfoI	GCGC	3 cut(s)	10, 61, 161
Cfr13I	GGNCC	2 cut(s)	243, 473
CseI	GACGC	2 cut(s)	643, 767
Csp6I	GTAC	2 cut(s)	181, 305
CviQI	GTAC	2 cut(s)	181, 305
DdeI	CTNAG	2 cut(s)	531, 830
DpnI	GATC	2 cut(s)	411, 886
DpnII	GATC	2 cut(s)	409, 884
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
EciI	GGCGGA	1 cut(s)	863
Eco24I	GRGCYC	2 cut(s)	131, 709
Eco47I	GGWCC	1 cut(s)	243
Eco47III	AGCGCT	1 cut(s)	9
Eco57I	CTGAAG	3 cut(s)	34, 303, 540
Eco72I	CACGTG	1 cut(s)	118
EcoO109I	RGGNCCY	2 cut(s)	243, 473
EcoT38I	GRGCYC	2 cut(s)	131, 709
Esp3I	CGTCTC	1 cut(s)	151
FaiI	YATR	7 cut(s)	191, 434, 452, 492, 525, 673, 764
FaqI	GGGAC	2 cut(s)	47, 809
FauI	CCCGC	2 cut(s)	643, 696
Fnu4HI	GCNGC	3 cut(s)	339, 669, 776
FokI	GGATG	2 cut(s)	528, 740
FriOI	GRGCYC	2 cut(s)	131, 709
Fsp4HI	GCNGC	3 cut(s)	339, 669, 776
FspAI	RTGCGCAY	1 cut(s)	60
FspBI	CTAG	2 cut(s)	207, 270
FspI	TGCGCA	1 cut(s)	60
GlaI	GCGC	3 cut(s)	9, 60, 160
GluI	GCNGC	3 cut(s)	339, 669, 776
HaeII	RGCGCY	2 cut(s)	11, 162
HaeIII	GGCC	1 cut(s)	475
HapII	CCGG	1 cut(s)	185
HgaI	GACGC	2 cut(s)	643, 767
HhaI	GCGC	3 cut(s)	10, 61, 161
Hin6I	GCGC	3 cut(s)	8, 59, 159
HinP1I	GCGC	3 cut(s)	8, 59, 159
HinfI	GANTC	6 cut(s)	121, 259, 425, 626, 640, 770
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	1 cut(s)	391
Hpy166II	GTNNAC	2 cut(s)	214, 782
Hpy188I	TCNGA	6 cut(s)	72, 126, 264, 421, 568, 711
Hpy188III	TCNNGA	2 cut(s)	281, 644
Hpy8I	GTNNAC	2 cut(s)	214, 782
HpyAV	CCTTC	3 cut(s)	352, 464, 486
HpyCH4III	ACNGT	4 cut(s)	23, 317, 608, 759
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	2 cut(s)	225, 611
HpyF10VI	GCNNNNNNNGC	4 cut(s)	202, 335, 347, 772
HpyF3I	CTNAG	2 cut(s)	531, 830
HpySE526I	ACGT	1 cut(s)	117
HspAI	GCGC	3 cut(s)	8, 59, 159
KpnI	GGTACC	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	409, 884
LguI	GCTCTTC	1 cut(s)	279
LmnI	GCTCC	2 cut(s)	5, 712
LpnPI	CCDG	9 cut(s)	28, 118, 175, 198, 294, 482, 518, 597, 807
Lsp1109I	GCAGC	2 cut(s)	680, 762
MaeI	CTAG	2 cut(s)	207, 270
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	2 cut(s)	411, 886
MbiI	CCGCTC	1 cut(s)	289
MboI	GATC	2 cut(s)	409, 884
MboII	GAAGA	9 cut(s)	296, 416, 449, 470, 523, 546, 628, 763, 861
MflI	RGATCY	1 cut(s)	884
MhlI	GDGCHC	3 cut(s)	131, 709, 810
MluCI	AATT	6 cut(s)	73, 82, 236, 386, 500, 735
MlyI	GAGTC	2 cut(s)	268, 620
MmeI	TCCRAC	1 cut(s)	603
MspI	CCGG	1 cut(s)	185
MspR9I	CCNGG	1 cut(s)	185
MwoI	GCNNNNNNNGC	4 cut(s)	202, 335, 347, 772
NciI	CCSGG	1 cut(s)	185
NdeII	GATC	2 cut(s)	409, 884
NlaIV	GGNNCC	5 cut(s)	182, 244, 279, 349, 708
NsbI	TGCGCA	1 cut(s)	60
PciSI	GCTCTTC	1 cut(s)	279
PfeI	GAWTC	4 cut(s)	121, 425, 640, 770
PkrI	GCNGC	3 cut(s)	340, 670, 777
PleI	GAGTC	2 cut(s)	267, 620
PmaCI	CACGTG	1 cut(s)	118
PmlI	CACGTG	1 cut(s)	118
PpsI	GAGTC	2 cut(s)	267, 620
Ppu21I	YACGTR	1 cut(s)	118
PpuMI	RGGWCCY	1 cut(s)	243
Psp5II	RGGWCCY	1 cut(s)	243
PspCI	CACGTG	1 cut(s)	118
PspN4I	GGNNCC	5 cut(s)	182, 244, 279, 349, 708
PspPI	GGNCC	2 cut(s)	243, 473
PspPPI	RGGWCCY	1 cut(s)	243
PsrI	GAACNNNNNNTAC	2 cut(s)	520, 552
PsuI	RGATCY	1 cut(s)	884
RsaI	GTAC	2 cut(s)	182, 306
RsaNI	GTAC	2 cut(s)	181, 305
SapI	GCTCTTC	1 cut(s)	279
SatI	GCNGC	3 cut(s)	339, 669, 776
Sau3AI	GATC	2 cut(s)	409, 884
Sau96I	GGNCC	2 cut(s)	243, 473
SchI	GAGTC	2 cut(s)	268, 620
ScrFI	CCNGG	1 cut(s)	185
SduI	GDGCHC	3 cut(s)	131, 709, 810
SetI	ASST	7 cut(s)	50, 95, 120, 381, 402, 681, 804
SfcI	CTRYAG	1 cut(s)	450
SinI	GGWCC	1 cut(s)	243
Sse9I	AATT	6 cut(s)	73, 82, 236, 386, 500, 735
SsiI	CCGC	5 cut(s)	289, 339, 650, 703, 848
SspI	AATATT	1 cut(s)	722
SspMI	CTAG	2 cut(s)	207, 270
StyD4I	CCNGG	1 cut(s)	183
TaaI	ACNGT	4 cut(s)	23, 317, 608, 759
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	4 cut(s)	95, 167, 293, 362
TasI	AATT	6 cut(s)	73, 82, 236, 386, 500, 735
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	4 cut(s)	121, 425, 640, 770
TscAI	CASTG	4 cut(s)	564, 613, 636, 801
TseI	GCWGC	2 cut(s)	668, 775
TspRI	CASTG	4 cut(s)	564, 613, 636, 801
VpaK11BI	GGWCC	1 cut(s)	243
XapI	RAATTY	2 cut(s)	73, 236
XspI	CTAG	2 cut(s)	207, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.