Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007732

Physical Location & Seq

Genomic Coordinates Forward (+)

31531454 .. 31532110

Gene Structure 657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0179800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGGTGTCTTCACTTATGAATCTGAGTTCACCTCTGTCATCCCACCAGCTAGGTTGTTCAAGGCCTTTGTCCTTGATGCCGATAACCTCATCCCCAAGATTGCCCCCCAAGCAGTTAAGAGTGCCGAGATTCTTGAAGGTGATGGAGGAGTTGGCACCATCAAGAAGATCAACCTTGGTGAAGGAAGTGAATACAGCTATGTGAAGCACCAGATTGACGGAATTGACAAAGACAACTTTGTCTACAAATACAGCATGATTGAGGGAGACGCTATATCTGACAAAATCGAGAAGATCTCCTATGAGACTAAGTTGGTAGCATCTTCCGATGGAGGCTCCGTCATCAAGAGCACCAGTAACTACCACATAAAGGGTGACGTGGAGATCAAGGAAGAGCATGTCAAGGCTGGAAAAGAAAGAGCCGCTGGTCTATTCAAGATCATCGAGAGCCACCTTCTAGCCAACCCTGAGGCCTACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009506 GO:0009909 GO:0009911 GO:0009987 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0030054 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0055044 GO:0065007 GO:0070011 GO:0070122 GO:0070137 GO:0070138 GO:0070139 GO:0070140 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

160

Amino Acids

17.5

Weight (kDa)

5.25

Isoelectric Point (pI)

25.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bet_v_1	PF00407	1 - 155	1.5e-25	Pathogenesis-related protein Bet v 1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15880 AT4G15880
fragaria_vesca	FvH4_4g18241 FvH4_4g18241 FvH4_4g18241
malus_domestica	MD13G1167800.v1.1 MD16G1167200.v1.1
prunus_persica	Prupe.1G135200_v2.0.a1 Prupe.1G135200_v2.0.a1 Prupe.1G135200_v2.0.a1
pyrus_communis	pycom13g14350 pycom16g14120
rosa_chinensis	RchiOBHm_Chr4g0422391
rosa_laevigata	RLG00000007613
rosa_multiflora	Rmu_sc0040163.1_g000001
rosa_roxburghii	Rroxscaffold_5G00364510
rosa_rugosa	Rorug04G0179800 Rorug04G0179900
rosa_samantha	Rh4AG239200 Rh4AG239600 Rh4BG242800 Rh4CG254200 Rh4DG238300
rosa_wichuraiana	Rw4G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	239
AccB1I	GGYRCC	1 cut(s)	155
AccI	GTMKAC	1 cut(s)	243
AciI	CCGC	1 cut(s)	423
AfiI	CCNNNNNNNGG	1 cut(s)	370
AgsI	TTSAA	3 cut(s)	61, 137, 436
AjiI	CACGTC	1 cut(s)	379
AluBI	AGCT	2 cut(s)	50, 198
AluI	AGCT	2 cut(s)	50, 198
Alw21I	GWGCWC	1 cut(s)	353
Alw26I	GTCTC	2 cut(s)	261, 299
AoxI	GGCC	2 cut(s)	63, 471
AsuHPI	GGTGA	4 cut(s)	22, 152, 191, 386
AxyI	CCTNAGG	1 cut(s)	468
BanI	GGYRCC	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	353
BccI	CCATC	3 cut(s)	137, 167, 323
BcoDI	GTCTC	2 cut(s)	261, 299
BfaI	CTAG	2 cut(s)	51, 458
BglII	AGATCT	1 cut(s)	294
BisI	GCNGC	1 cut(s)	423
BlsI	GCNGC	1 cut(s)	424
BmgBI	CACGTC	1 cut(s)	379
BmiI	GGNNCC	2 cut(s)	157, 337
BmsI	GCATC	2 cut(s)	67, 329
BplI	GAGNNNNNCTC	4 cut(s)	17, 49, 281, 313
BsaJI	CCNNGG	1 cut(s)	175
BsaXI	ACNNNNNCTCC	2 cut(s)	324, 354
Bsc4I	CCNNNNNNNGG	1 cut(s)	370
Bse1I	ACTGG	1 cut(s)	354
Bse21I	CCTNAGG	1 cut(s)	468
BseDI	CCNNGG	1 cut(s)	175
BseGI	GGATG	2 cut(s)	39, 90
BseLI	CCNNNNNNNGG	1 cut(s)	370
BseMII	CTCAG	2 cut(s)	15, 459
BseNI	ACTGG	1 cut(s)	354
BseRI	GAGGAG	1 cut(s)	162
BshFI	GGCC	2 cut(s)	65, 473
BshNI	GGYRCC	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	353
BslI	CCNNNNNNNGG	1 cut(s)	370
BsmAI	GTCTC	2 cut(s)	261, 299
BsmBI	CGTCTC	1 cut(s)	261
BsnI	GGCC	2 cut(s)	65, 473
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	4 cut(s)	168, 294, 384, 438
BspACI	CCGC	1 cut(s)	423
BspANI	GGCC	2 cut(s)	65, 473
BspCNI	CTCAG	2 cut(s)	16, 460
BspLI	GGNNCC	2 cut(s)	157, 337
BspQI	GCTCTTC	1 cut(s)	387
BspT107I	GGYRCC	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	354
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	4 cut(s)	168, 294, 384, 438
BssT1I	CCWWGG	1 cut(s)	175
Bst6I	CTCTTC	1 cut(s)	387
BstDEI	CTNAG	3 cut(s)	24, 309, 468
BstF5I	GGATG	2 cut(s)	39, 90
BstKTI	GATC	4 cut(s)	171, 297, 387, 441
BstMAI	GTCTC	2 cut(s)	261, 299
BstMBI	GATC	4 cut(s)	168, 294, 384, 438
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	401
BstX2I	RGATCY	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	294
Bsu36I	CCTNAGG	1 cut(s)	468
BsuRI	GGCC	2 cut(s)	65, 473
BtrI	CACGTC	1 cut(s)	379
BtsCI	GGATG	2 cut(s)	39, 90
CseI	GACGC	1 cut(s)	278
CviAII	CATG	2 cut(s)	256, 398
CviJI	RGCY	9 cut(s)	50, 65, 198, 336, 407, 422, 450, 461, 473
CviKI_1	RGCY	9 cut(s)	50, 65, 198, 336, 407, 422, 450, 461, 473
DdeI	CTNAG	3 cut(s)	24, 309, 468
DpnI	GATC	4 cut(s)	170, 296, 386, 440
DpnII	GATC	4 cut(s)	168, 294, 384, 438
DrdI	GACNNNNNNGTC	1 cut(s)	239
DseDI	GACNNNNNNGTC	1 cut(s)	239
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco130I	CCWWGG	1 cut(s)	175
Eco147I	AGGCCT	2 cut(s)	65, 473
Eco81I	CCTNAGG	1 cut(s)	468
EcoT14I	CCWWGG	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	175
Esp3I	CGTCTC	1 cut(s)	261
FaeI	CATG	2 cut(s)	259, 401
FaiI	YATR	7 cut(s)	18, 201, 257, 275, 303, 368, 399
FatI	CATG	2 cut(s)	255, 397
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	1 cut(s)	423
FokI	GGATG	2 cut(s)	26, 77
Fsp4HI	GCNGC	1 cut(s)	423
FspBI	CTAG	2 cut(s)	51, 458
GluI	GCNGC	1 cut(s)	423
HaeIII	GGCC	2 cut(s)	65, 473
HgaI	GACGC	1 cut(s)	278
Hin1II	CATG	2 cut(s)	259, 401
HinfI	GANTC	2 cut(s)	20, 130
HphI	GGTGA	4 cut(s)	22, 152, 191, 386
Hpy166II	GTNNAC	2 cut(s)	30, 244
Hpy188I	TCNGA	3 cut(s)	25, 280, 328
Hpy188III	TCNNGA	6 cut(s)	134, 163, 289, 346, 436, 445
Hpy8I	GTNNAC	2 cut(s)	30, 244
HpyAV	CCTTC	3 cut(s)	131, 176, 464
HpyCH4IV	ACGT	1 cut(s)	378
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	3 cut(s)	24, 309, 468
HpySE526I	ACGT	1 cut(s)	378
Hsp92II	CATG	2 cut(s)	259, 401
Kzo9I	GATC	4 cut(s)	168, 294, 384, 438
LguI	GCTCTTC	1 cut(s)	387
LmnI	GCTCC	1 cut(s)	341
LpnPI	CCDG	5 cut(s)	60, 224, 367, 393, 411
LweI	GCATC	2 cut(s)	67, 329
MaeI	CTAG	2 cut(s)	51, 458
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	2 cut(s)	356, 374
MalI	GATC	4 cut(s)	170, 296, 386, 440
MboI	GATC	4 cut(s)	168, 294, 384, 438
MboII	GAAGA	4 cut(s)	178, 304, 315, 404
MflI	RGATCY	1 cut(s)	294
MhlI	GDGCHC	1 cut(s)	353
MluCI	AATT	1 cut(s)	222
MnlI	CCTC	6 cut(s)	43, 98, 140, 256, 326, 463
MseI	TTAA	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	425
MwoI	GCNNNNNNNGC	1 cut(s)	110
NdeII	GATC	4 cut(s)	168, 294, 384, 438
NlaIII	CATG	2 cut(s)	259, 401
NlaIV	GGNNCC	2 cut(s)	157, 337
NmeAIII	GCCGAG	1 cut(s)	151
NmuCI	GTSAC	1 cut(s)	374
NspI	RCATGY	1 cut(s)	401
PceI	AGGCCT	2 cut(s)	65, 473
PciSI	GCTCTTC	1 cut(s)	387
PfeI	GAWTC	2 cut(s)	20, 130
PkrI	GCNGC	1 cut(s)	424
PspN4I	GGNNCC	2 cut(s)	157, 337
PsuI	RGATCY	1 cut(s)	294
SapI	GCTCTTC	1 cut(s)	387
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	1 cut(s)	423
Sau3AI	GATC	4 cut(s)	168, 294, 384, 438
SduI	GDGCHC	1 cut(s)	353
SetI	ASST	9 cut(s)	35, 52, 56, 90, 142, 177, 200, 381, 456
SfaNI	GCATC	2 cut(s)	67, 329
Sse9I	AATT	1 cut(s)	222
SseBI	AGGCCT	2 cut(s)	65, 473
SsiI	CCGC	1 cut(s)	423
SspMI	CTAG	2 cut(s)	51, 458
StuI	AGGCCT	2 cut(s)	65, 473
StyI	CCWWGG	1 cut(s)	175
TaiI	ACGT	1 cut(s)	381
TaqI	TCGA	2 cut(s)	288, 444
TasI	AATT	1 cut(s)	222
TauI	GCSGC	1 cut(s)	425
TfiI	GAWTC	2 cut(s)	20, 130
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	374
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	1 cut(s)	33
TspGWI	ACGGA	2 cut(s)	234, 328
XceI	RCATGY	1 cut(s)	401
XmiI	GTMKAC	1 cut(s)	243
XspI	CTAG	2 cut(s)	51, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.