MD13G1167800.v1.1

Ubiquitin-like-specific protease

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
13588224 .. 13593096
4873 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1167800.v1.1.491

Sequence Viewer

Length: 1527 bp
ATGGGAGCGCTAACCAGCAACCGTAAGCGAGGGGACGAGCGTTTGAGCTTCAATTGTGCGCACCCATCTCTGAATTTGCCTAATTTTCAAAGCTCGAAGCGACCCAGATTGTCTCACGTGAATCAGAGCCCGAACCAACTCATCGTCTCTTCTAAAAGCGCCGGTTCGAGGCTCTCTCGGTACCCGGATATAAAGCCCCCATTGCCTAGAGTTCACGCCCCTTGCAGAACACAAAAATTCGGGTCCTTTCGTGGTTTGAGTCCGAAAACTAGAGGGGTTCCTGAAGAGCGGTCGATGGGCAATGTACTGAGTTACCATTTGGACAAGGCAAAGAACGTCGCCTTCAGTGCATTTCGGTATTCGACCAAGGACAAGGAGGTGATTGAATTGGATAAGGAGGTTGAAGATGATCGGGTTTCCGAGGATTCAAGCATAGAAGAAGTTGTGGCTATAGAGGAAGATGACCAAGAAGGGCCTTCTGTGGTGGATTATGGGCAGGAATTGGATACGAAGATGGTGGATTGTGGAACTCAGGCTACTCATCCATCGGCTTCTTCAGTGGTTTCAGACTTGACCACAACTACGAATACTGCTTTCAAAGAGGACAGTGCAGGGAAGATGTTGGACTCACTGTCGCTGAATCGTGAGGTGGGTGTGCCAAGTAAGGCAGCATACAAGCTGTTGATTGAGAGTGTAGAGAGGCGGACTCCGAAACTGAAACATTTGGATTTCCAAATTGACTTCCATTGGAAGAAACGGTATATGCTTGAATCGCTGCGTCCACAAAAGAAACCAGTGGAGGTTGTGCCCGTTGAACCATTTGTCCCTCTTAGAAAGGAGGAAGTGGCGGAGATTGAGCAAGCATTTTCTTCCTCCAACCGGAAGAGGATCTTGGTAACTCATGAGAACTCAAACATAGAGATAACTGGTGAACTTCTGCAGTGCCTTAGACCAGGGGCGTGGTTGAAGGATGAGGTCATAAATGTGTACCTTGAATTGCTGAAAGAGAGGGAGAAGAGAGAACCACAAAAGTTCTTAAAATGTCACTTCTTCAACACATTTTTCTATACAAAGTTGATAAGTGGGAAAGGTGGCTATGATTATAAATCTGTCAGAAGGTGGACTACCGAAAGAAAGTTGGGATACTACCTCATTGATTGCGACAAAATATTTGTCCCCATCCACAAAGAAATACATTGGTGCTTGGCAGTTATTAACAAGGTAGATCAGAAGTTACAGTATCTTGATTCACTCAAAGGAAGGGATACCCAAGTGATGAGAATATTGGCTAAATACTACGTTGATGAAGTGAAGGACAAGAGTGGAGAGGATATCGATTTGAGTTCTTGGGAATTAGAATATGTTGACAACCTTCCTGAGCAGGAGAATGGGTATGACTGTGGTGTTTTCATGGTTAAATATGCTGACTTTTATAGCAGGGATATTGGGCTCTGTTTCAAACAGGAACACATGCCATATTTTCGATCGAGAACAGCGAAGGAGATCCTAAAATTGAGAGCAGACTGA

Protein Analysis

509

Amino Acids

58.53

Weight (kDa)

7.93

Isoelectric Point (pI)

52.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 321 - 502 1.9e-43 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1104
Acc16I TGCGCA 1 cut(s) 60
Acc65I GGTACC 1 cut(s) 180
AccB1I GGYRCC 1 cut(s) 180
AccBSI CCGCTC 1 cut(s) 289
AciI CCGC 3 cut(s) 289, 703, 848
AclWI GGATC 2 cut(s) 896, 1498
AcsI RAATTY 2 cut(s) 73, 236
AcuI CTGAAG 3 cut(s) 303, 328, 540
AcvI CACGTG 1 cut(s) 118
AfaI GTAC 3 cut(s) 182, 306, 989
AfeI AGCGCT 1 cut(s) 9
AfiI CCNNNNNNNGG 2 cut(s) 168, 879
AhdI GACNNNNNGTC 1 cut(s) 631
AjnI CCWGG 1 cut(s) 952
AjuI GAANNNNNNNTTGG 2 cut(s) 875, 907
AloI GAACNNNNNNTCC 2 cut(s) 807, 839
AluBI AGCT 3 cut(s) 48, 93, 679
AluI AGCT 3 cut(s) 48, 93, 679
Alw26I GTCTC 2 cut(s) 117, 151
AlwI GGATC 2 cut(s) 896, 1498
Aor51HI AGCGCT 1 cut(s) 9
AoxI GGCC 1 cut(s) 473
ApeKI GCWGC 2 cut(s) 668, 775
ApoI RAATTY 2 cut(s) 73, 236
ArsI GACNNNNNNTTYG 4 cut(s) 1154, 1158, 1186, 1190
Asp718I GGTACC 1 cut(s) 180
AspLEI GCGC 3 cut(s) 10, 61, 161
AspS9I GGNCC 2 cut(s) 243, 473
AsuC2I CCSGG 1 cut(s) 185
AsuHPI GGTGA 2 cut(s) 391, 941
AvaII GGWCC 1 cut(s) 243
BaeGI GKGCMC 1 cut(s) 810
BaeI ACNNNNGTAYC 2 cut(s) 1257, 1290
BanI GGYRCC 1 cut(s) 180
BanII GRGCYC 2 cut(s) 131, 1452
BarI GAAGNNNNNNTAC 2 cut(s) 1108, 1140
BbrPI CACGTG 1 cut(s) 118
BbvI GCAGC 2 cut(s) 680, 762
BccI CCATC 5 cut(s) 73, 289, 508, 553, 1187
BciT130I CCWGG 1 cut(s) 954
BciVI GTATCC 3 cut(s) 499, 1136, 1258
BcnI CCSGG 1 cut(s) 185
BcoDI GTCTC 2 cut(s) 117, 151
BfaI CTAG 2 cut(s) 207, 270
BfmI CTRYAG 2 cut(s) 450, 938
BfoI RGCGCY 2 cut(s) 11, 162
BfuI GTATCC 3 cut(s) 499, 1136, 1258
BisI GCNGC 2 cut(s) 669, 776
BlsI GCNGC 2 cut(s) 670, 777
Bme1390I CCNGG 2 cut(s) 185, 954
Bme18I GGWCC 1 cut(s) 243
BmeRI GACNNNNNGTC 1 cut(s) 631
BmgT120I GGNCC 2 cut(s) 243, 473
BmiI GGNNCC 3 cut(s) 182, 244, 279
BmrFI CCNGG 2 cut(s) 185, 954
BplI GAGNNNNNCTC 4 cut(s) 160, 192, 691, 723
Bpu10I CCTNAGC 1 cut(s) 1377
BpuMI CCSGG 1 cut(s) 185
Bsa29I ATCGAT 1 cut(s) 1335
BsaAI YACGTR 1 cut(s) 118
BsaJI CCNNGG 3 cut(s) 366, 420, 953
BsaWI WCCGGW 1 cut(s) 879
BsaXI ACNNNNNCTCC 2 cut(s) 1376, 1406
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 879
Bse118I RCCGGY 1 cut(s) 161
Bse1I ACTGG 2 cut(s) 794, 931
Bse3DI GCAATG 2 cut(s) 200, 307
BseBI CCWGG 1 cut(s) 954
BseCI ATCGAT 1 cut(s) 1335
BseDI CCNNGG 3 cut(s) 366, 420, 953
BseGI GGATG 3 cut(s) 541, 976, 1179
BseLI CCNNNNNNNGG 2 cut(s) 168, 879
BseMI GCAATG 2 cut(s) 200, 307
BseMII CTCAG 3 cut(s) 299, 545, 1368
BseNI ACTGG 2 cut(s) 794, 931
BseSI GKGCMC 1 cut(s) 810
BseXI GCAGC 2 cut(s) 680, 762
BsgI GTGCAG 1 cut(s) 630
Bsh1285I CGRYCG 2 cut(s) 293, 1487
BshFI GGCC 1 cut(s) 475
BshNI GGYRCC 1 cut(s) 180
BshVI ATCGAT 1 cut(s) 1335
BsiEI CGRYCG 2 cut(s) 293, 1487
BsiSI CCGG 3 cut(s) 162, 185, 880
BslFI GGGAC 3 cut(s) 47, 809, 1160
BslI CCNNNNNNNGG 2 cut(s) 168, 879
BsmAI GTCTC 2 cut(s) 117, 151
BsmBI CGTCTC 1 cut(s) 151
BsmFI GGGAC 3 cut(s) 47, 809, 1160
BsnI GGCC 1 cut(s) 475
Bsp1286I GDGCHC 3 cut(s) 131, 810, 1452
Bsp143I GATC 5 cut(s) 409, 888, 1225, 1484, 1503
BspACI CCGC 3 cut(s) 289, 703, 848
BspANI GGCC 1 cut(s) 475
BspCNI CTCAG 3 cut(s) 300, 544, 1369
BspDI ATCGAT 1 cut(s) 1335
BspHI TCATGA 1 cut(s) 901
BspLI GGNNCC 3 cut(s) 182, 244, 279
BspMAI CTGCAG 1 cut(s) 942
BspPI GGATC 2 cut(s) 896, 1498
BspQI GCTCTTC 1 cut(s) 279
BspT107I GGYRCC 1 cut(s) 180
BsrBI CCGCTC 1 cut(s) 289
BsrDI GCAATG 2 cut(s) 200, 307
BsrFI RCCGGY 1 cut(s) 161
BsrI ACTGG 2 cut(s) 794, 931
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 3 cut(s) 366, 420, 953
BssMI GATC 5 cut(s) 409, 888, 1225, 1484, 1503
BssT1I CCWWGG 1 cut(s) 366
Bst2UI CCWGG 1 cut(s) 954
Bst4CI ACNGT 6 cut(s) 23, 608, 633, 759, 1239, 1400
Bst6I CTCTTC 4 cut(s) 154, 279, 878, 1010
BstBAI YACGTR 1 cut(s) 118
BstC8I GCNNGC 1 cut(s) 861
BstDEI CTNAG 5 cut(s) 308, 531, 830, 947, 1377
BstF5I GGATG 3 cut(s) 541, 976, 1179
BstH2I RGCGCY 2 cut(s) 11, 162
BstHHI GCGC 3 cut(s) 10, 61, 161
BstKTI GATC 5 cut(s) 412, 891, 1228, 1487, 1506
BstMAI GTCTC 2 cut(s) 117, 151
BstMBI GATC 5 cut(s) 409, 888, 1225, 1484, 1503
BstMCI CGRYCG 2 cut(s) 293, 1487
BstMWI GCNNNNNNNGC 3 cut(s) 202, 347, 772
BstNI CCWGG 1 cut(s) 954
BstNSI RCATGY 1 cut(s) 1474
BstSCI CCNGG 2 cut(s) 183, 952
BstSFI CTRYAG 2 cut(s) 450, 938
BstSLI GKGCMC 1 cut(s) 810
BstV1I GCAGC 2 cut(s) 680, 762
BstX2I RGATCY 2 cut(s) 888, 1503
BstXI CCANNNNNNTGG 1 cut(s) 960
BstYI RGATCY 2 cut(s) 888, 1503
Bsu15I ATCGAT 1 cut(s) 1335
BsuI GTATCC 3 cut(s) 499, 1136, 1258
BsuRI GGCC 1 cut(s) 475
BsuTUI ATCGAT 1 cut(s) 1335
BtsCI GGATG 3 cut(s) 541, 976, 1179
BtsI GCAGTG 1 cut(s) 947
BtsIMutI CAGTG 6 cut(s) 352, 564, 613, 629, 801, 947
Cac8I GCNNGC 1 cut(s) 861
CciI TCATGA 1 cut(s) 901
CfoI GCGC 3 cut(s) 10, 61, 161
Cfr10I RCCGGY 1 cut(s) 161
Cfr13I GGNCC 2 cut(s) 243, 473
ClaI ATCGAT 1 cut(s) 1335
CseI GACGC 1 cut(s) 767
Csp6I GTAC 3 cut(s) 181, 305, 988
CviAII CATG 3 cut(s) 902, 1411, 1471
CviQI GTAC 3 cut(s) 181, 305, 988
DdeI CTNAG 5 cut(s) 308, 531, 830, 947, 1377
DpnI GATC 5 cut(s) 411, 890, 1227, 1486, 1505
DpnII GATC 5 cut(s) 409, 888, 1225, 1484, 1503
DriI GACNNNNNGTC 1 cut(s) 631
Eam1104I CTCTTC 4 cut(s) 154, 279, 878, 1010
Eam1105I GACNNNNNGTC 1 cut(s) 631
EarI CTCTTC 4 cut(s) 154, 279, 878, 1010
EciI GGCGGA 2 cut(s) 718, 863
Eco130I CCWWGG 1 cut(s) 366
Eco24I GRGCYC 2 cut(s) 131, 1452
Eco32I GATATC 1 cut(s) 1333
Eco47I GGWCC 1 cut(s) 243
Eco47III AGCGCT 1 cut(s) 9
Eco57I CTGAAG 3 cut(s) 303, 328, 540
Eco72I CACGTG 1 cut(s) 118
EcoO109I RGGNCCY 2 cut(s) 243, 473
EcoRII CCWGG 1 cut(s) 952
EcoRV GATATC 1 cut(s) 1333
EcoT14I CCWWGG 1 cut(s) 366
EcoT38I GRGCYC 2 cut(s) 131, 1452
ErhI CCWWGG 1 cut(s) 366
Esp3I CGTCTC 1 cut(s) 151
FaeI CATG 3 cut(s) 905, 1414, 1474
FalI AAGNNNNNCTT 2 cut(s) 875, 907
FaqI GGGAC 3 cut(s) 47, 809, 1160
FatI CATG 3 cut(s) 901, 1410, 1470
Fnu4HI GCNGC 2 cut(s) 669, 776
FokI GGATG 3 cut(s) 528, 983, 1166
FriOI GRGCYC 2 cut(s) 131, 1452
Fsp4HI GCNGC 2 cut(s) 669, 776
FspAI RTGCGCAY 1 cut(s) 60
FspBI CTAG 2 cut(s) 207, 270
FspI TGCGCA 1 cut(s) 60
GlaI GCGC 3 cut(s) 9, 60, 160
GluI GCNGC 2 cut(s) 669, 776
HaeII RGCGCY 2 cut(s) 11, 162
HaeIII GGCC 1 cut(s) 475
HapII CCGG 3 cut(s) 162, 185, 880
HgaI GACGC 1 cut(s) 767
HhaI GCGC 3 cut(s) 10, 61, 161
Hin1II CATG 3 cut(s) 905, 1414, 1474
Hin6I GCGC 3 cut(s) 8, 59, 159
HinP1I GCGC 3 cut(s) 8, 59, 159
HincII GTYRAC 1 cut(s) 1366
HindII GTYRAC 1 cut(s) 1366
HinfI GANTC 8 cut(s) 121, 259, 425, 626, 640, 706, 770, 1247
HpaII CCGG 3 cut(s) 162, 185, 880
HphI GGTGA 2 cut(s) 391, 941
Hpy166II GTNNAC 6 cut(s) 214, 782, 932, 988, 1122, 1366
Hpy188I TCNGA 8 cut(s) 72, 126, 264, 421, 568, 711, 1115, 1230
Hpy188III TCNNGA 6 cut(s) 281, 644, 902, 1244, 1376, 1488
Hpy8I GTNNAC 6 cut(s) 214, 782, 932, 988, 1122, 1366
Hpy99I CGWCG 1 cut(s) 341
HpyAV CCTTC 9 cut(s) 352, 464, 486, 961, 1110, 1254, 1306, 1382, 1492
HpyCH4III ACNGT 6 cut(s) 23, 608, 633, 759, 1239, 1400
HpyCH4IV ACGT 3 cut(s) 117, 336, 1299
HpyCH4V TGCA 4 cut(s) 225, 350, 611, 940
HpyF10VI GCNNNNNNNGC 3 cut(s) 202, 347, 772
HpyF3I CTNAG 5 cut(s) 308, 531, 830, 947, 1377
HpySE526I ACGT 3 cut(s) 117, 336, 1299
Hsp92II CATG 3 cut(s) 905, 1414, 1474
HspAI GCGC 3 cut(s) 8, 59, 159
KpnI GGTACC 1 cut(s) 184
Kzo9I GATC 5 cut(s) 409, 888, 1225, 1484, 1503
LguI GCTCTTC 1 cut(s) 279
LmnI GCTCC 1 cut(s) 5
Lsp1109I GCAGC 2 cut(s) 680, 762
MaeI CTAG 2 cut(s) 207, 270
MaeII ACGT 3 cut(s) 117, 336, 1299
MaeIII GTNAC 4 cut(s) 311, 895, 1043, 1233
MalI GATC 5 cut(s) 411, 890, 1227, 1486, 1505
MbiI CCGCTC 1 cut(s) 289
MboI GATC 5 cut(s) 409, 888, 1225, 1484, 1503
MfeI CAATTG 1 cut(s) 52
MflI RGATCY 2 cut(s) 888, 1503
MhlI GDGCHC 3 cut(s) 131, 810, 1452
MlyI GAGTC 3 cut(s) 268, 620, 700
MmeI TCCRAC 2 cut(s) 603, 900
MseI TTAA 3 cut(s) 1037, 1215, 1416
MslI CAYNNNNRTG 1 cut(s) 983
MspI CCGG 3 cut(s) 162, 185, 880
MspR9I CCNGG 2 cut(s) 185, 954
MunI CAATTG 1 cut(s) 52
MvaI CCWGG 1 cut(s) 954
MwoI GCNNNNNNNGC 3 cut(s) 202, 347, 772
NciI CCSGG 1 cut(s) 185
NdeII GATC 5 cut(s) 409, 888, 1225, 1484, 1503
NlaIII CATG 3 cut(s) 905, 1414, 1474
NlaIV GGNNCC 3 cut(s) 182, 244, 279
NmuCI GTSAC 1 cut(s) 1043
NsbI TGCGCA 1 cut(s) 60
NspI RCATGY 1 cut(s) 1474
PagI TCATGA 1 cut(s) 901
PciSI GCTCTTC 1 cut(s) 279
PcsI WCGNNNNNNNCGW 1 cut(s) 1493
PfeI GAWTC 5 cut(s) 121, 425, 640, 770, 1247
PkrI GCNGC 2 cut(s) 670, 777
Ple19I CGATCG 1 cut(s) 1487
PleI GAGTC 3 cut(s) 267, 620, 700
PmaCI CACGTG 1 cut(s) 118
PmlI CACGTG 1 cut(s) 118
PpsI GAGTC 3 cut(s) 267, 620, 700
Ppu21I YACGTR 1 cut(s) 118
PpuMI RGGWCCY 1 cut(s) 243
PsiI TTATAA 1 cut(s) 1104
Psp5II RGGWCCY 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 952
PspCI CACGTG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 952
PspN4I GGNNCC 3 cut(s) 182, 244, 279
PspPI GGNCC 2 cut(s) 243, 473
PspPPI RGGWCCY 1 cut(s) 243
PsrI GAACNNNNNNTAC 2 cut(s) 520, 552
PstI CTGCAG 1 cut(s) 942
PsuI RGATCY 2 cut(s) 888, 1503
PvuI CGATCG 1 cut(s) 1487
RsaI GTAC 3 cut(s) 182, 306, 989
RsaNI GTAC 3 cut(s) 181, 305, 988
RseI CAYNNNNRTG 1 cut(s) 983
SapI GCTCTTC 1 cut(s) 279
SaqAI TTAA 3 cut(s) 1037, 1215, 1416
SatI GCNGC 2 cut(s) 669, 776
Sau3AI GATC 5 cut(s) 409, 888, 1225, 1484, 1503
Sau96I GGNCC 2 cut(s) 243, 473
SchI GAGTC 3 cut(s) 268, 620, 700
ScrFI CCNGG 2 cut(s) 185, 954
SduI GDGCHC 3 cut(s) 131, 810, 1452
SfcI CTRYAG 2 cut(s) 450, 938
SinI GGWCC 1 cut(s) 243
SmiMI CAYNNNNRTG 1 cut(s) 983
SsiI CCGC 3 cut(s) 289, 703, 848
SspI AATATT 2 cut(s) 1170, 1284
SspMI CTAG 2 cut(s) 207, 270
StyD4I CCNGG 2 cut(s) 183, 952
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 6 cut(s) 23, 608, 633, 759, 1239, 1400
TaiI ACGT 3 cut(s) 120, 339, 1302
TaqI TCGA 7 cut(s) 95, 167, 293, 362, 1335, 1483, 1487
TatI WGTACW 1 cut(s) 304
TfiI GAWTC 5 cut(s) 121, 425, 640, 770, 1247
Tru1I TTAA 3 cut(s) 1037, 1215, 1416
Tru9I TTAA 3 cut(s) 1037, 1215, 1416
TscAI CASTG 6 cut(s) 352, 564, 613, 636, 801, 947
TseFI GTSAC 1 cut(s) 1043
TseI GCWGC 2 cut(s) 668, 775
Tsp45I GTSAC 1 cut(s) 1043
TspDTI ATGAA 2 cut(s) 1320, 1399
TspRI CASTG 6 cut(s) 352, 564, 613, 636, 801, 947
VpaK11BI GGWCC 1 cut(s) 243
XapI RAATTY 2 cut(s) 73, 236
XceI RCATGY 1 cut(s) 1474
XspI CTAG 2 cut(s) 207, 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.