Prupe.1G135200_v2.0.a1

Ubiquitin-like-specific protease

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
10665664 .. 10670279
4616 bp
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UTR
Exon/CDS
Intron
Prupe.1G135200.1

Sequence Viewer

Length: 1548 bp
ATGGGAGCACTAACCAGCAATCGTAAGCGAGGGGACGAGTGTTTGAGCTTGAATTCTGCACACCCATCTCCGTATTCGCAGAATTTTCAAATTTCAAAGCGACCCAGATTCTCTTATGTGAAGCAAATCCCGGACCGGCCCATATTATCTTCCAATAGCGTCGCTTCGAGGGTCTCTCGTTACCCAGATATAAAGCCGCCACTGACGAGAGTTCACGCCCCTTGTAGAACAGGCAAATTCGGGTTCTTCTCGAACAGAGAAGATTCGAGCCCAAAAACCAGAGGGGTTCATGAGAAGGAGCGGTCGGGTGTCATAATGGGCAGTTTATTGTCTTTCCATTTGGAAAAGGCGAAGAGCAGGGCGTTAGATACATTCCGTTATTTGAACAAGGGCAAGGAGGTGATTGAATTGGATGAAGAGGTTGAAACTGACCGAGTTTCTGAGGATTCGAGCATAGAAGAAGTTCTGGCTATAGAGGAAGATGACCGAGAAGGGCCTTCTGTGGTGGATTATGTGCAGGAATTGGATACGAAGATGGTGGACTGTGGACCTCAGGGTACTCAGCCATCGGCTTCTTCGGTGGTTTCAGACTTGACCACACTGACGAATGGCCCTTTCAAAGTGGACAGTGCAGGAAAGATGTTGGACTCATTGTCGCTAAATCGAGAGGTGGAGGTGCCGAGTGTGGTAGTGTACAAGCAGTTGCTTGAGAGTGTAGAGAGGCGGACTCCGAAACTTGAACATTTGCATTCCCAAATTGAGTTCAATGTGAGCAAACTGTCTCTGCTTGAATCGCTGCGTCCACAAAAGAAACCAGTGAAGGTTGTACCCGATGAACCCTTTGTTGCTCTTCGAAAGGAGGAAATGGCTGAGGTTGAGCAAGCATTTTCCTCTGCCAATCGGAGGAGAGTCTTGGTAACTCATGAGAACTCAAACATAGAGATCACAGGTGAAATGCTGCAGTGCCTTAGACCACGTGCATGGTTGAATGACGAGGTCATAAATGTCTACTTTGAGTTGCTGAAAGAGAGGGAAAAGAGAGAGCCACAGAATTTCTTAAAATGTCATTTCTTCAACACATTTTTCTACAAAAAGTTGATAGGTGGGAAAAGTAACTATGATTATAAATCCGTCAGAAGGTGGACTACCCAAAAGAAGCTGGGATACAGCCTCATCGATTGTGACAAAATATTTGTTCCCATCCACAAAGAAATACATTGGTGTTTGGCAGTTATTAACAAGGCAGAGGAGAAGTTACAGTATCTTGATTCACTCAAAGGAAGGGATACCCAAGTGATGAACAGATTGGCGAAATACTATGTTGATGAAGTGAAGGATAAGTGTGGAAAAGACATCAATTTGAGTTCTTGGAAATTAGAATATGTTGAAGACCTTCCTGAGCAGGAGAATGGGTTTGACTGTGGTGTGTTCATGATCAAATATGCTGACTTTTATAGCAGGGGCTTGGATCTCTGTTTCAAGCAGGAACACATGCCATATTTTCGATTGAGAACAGCCAAGGAGATCCTAAAATTGAGAGCGGACTGA

Protein Analysis

516

Amino Acids

59.41

Weight (kDa)

7.91

Isoelectric Point (pI)

50.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1125
AccB1I GGYRCC 1 cut(s) 676
AccBSI CCGCTC 2 cut(s) 301, 1541
AccI GTMKAC 1 cut(s) 1008
AciI CCGC 4 cut(s) 197, 301, 724, 1541
AclWI GGATC 2 cut(s) 1476, 1519
AcsI RAATTY 5 cut(s) 52, 82, 90, 236, 1051
AcvI CACGTG 1 cut(s) 977
AfaI GTAC 3 cut(s) 559, 695, 828
AfiI CCNNNNNNNGG 2 cut(s) 903, 1137
AhdI GACNNNNNGTC 1 cut(s) 652
AluBI AGCT 2 cut(s) 48, 1159
AluI AGCT 2 cut(s) 48, 1159
Alw21I GWGCWC 1 cut(s) 10
Alw26I GTCTC 2 cut(s) 178, 786
AlwI GGATC 2 cut(s) 1476, 1519
AoxI GGCC 3 cut(s) 137, 494, 610
ApeKI GCWGC 2 cut(s) 796, 958
ApoI RAATTY 5 cut(s) 52, 82, 90, 236, 1051
ArsI GACNNNNNNTTYG 2 cut(s) 1175, 1207
Asp700I GAANNNNTTC 2 cut(s) 462, 1392
AspS9I GGNCC 5 cut(s) 133, 138, 494, 548, 611
AsuC2I CCSGG 1 cut(s) 131
AsuHPI GGTGA 2 cut(s) 412, 962
AsuII TTCGAA 1 cut(s) 853
AvaII GGWCC 2 cut(s) 133, 548
AxyI CCTNAGG 1 cut(s) 552
BaeI ACNNNNGTAYC 2 cut(s) 1278, 1311
BanI GGYRCC 1 cut(s) 676
BanII GRGCYC 1 cut(s) 272
BarI GAAGNNNNNNTAC 4 cut(s) 1129, 1148, 1161, 1180
BbrPI CACGTG 1 cut(s) 977
BbsI GAAGAC 1 cut(s) 1395
Bbv12I GWGCWC 1 cut(s) 10
BbvCI CCTCAGC 1 cut(s) 870
BbvI GCAGC 2 cut(s) 783, 945
BccI CCATC 4 cut(s) 73, 529, 574, 1208
BciVI GTATCC 3 cut(s) 520, 1157, 1279
BclI TGATCA 1 cut(s) 1434
BcnI CCSGG 1 cut(s) 131
BcoDI GTCTC 2 cut(s) 178, 786
BfmI CTRYAG 2 cut(s) 471, 959
BfuI GTATCC 3 cut(s) 520, 1157, 1279
BisI GCNGC 3 cut(s) 197, 797, 959
BlsI GCNGC 3 cut(s) 198, 798, 960
Bme1390I CCNGG 1 cut(s) 131
Bme18I GGWCC 2 cut(s) 133, 548
BmeRI GACNNNNNGTC 1 cut(s) 652
BmgT120I GGNCC 5 cut(s) 133, 138, 494, 548, 611
BmiI GGNNCC 1 cut(s) 678
BmrFI CCNGG 1 cut(s) 131
BpiI GAAGAC 1 cut(s) 1395
BplI GAGNNNNNCTC 4 cut(s) 160, 192, 712, 744
Bpu10I CCTNAGC 2 cut(s) 870, 1398
Bpu14I TTCGAA 1 cut(s) 853
BpuEI CTTGAG 1 cut(s) 728
BpuMI CCSGG 1 cut(s) 131
Bsa29I ATCGAT 1 cut(s) 1176
BsaAI YACGTR 1 cut(s) 977
BsaI GGTCTC 1 cut(s) 178
BsaJI CCNNGG 1 cut(s) 1518
BsaXI ACNNNNNCTCC 2 cut(s) 1397, 1427
Bsc4I CCNNNNNNNGG 2 cut(s) 903, 1137
Bse118I RCCGGY 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 815
Bse21I CCTNAGG 1 cut(s) 552
BseCI ATCGAT 1 cut(s) 1176
BseDI CCNNGG 1 cut(s) 1518
BseGI GGATG 2 cut(s) 418, 1200
BseLI CCNNNNNNNGG 2 cut(s) 903, 1137
BseMII CTCAG 5 cut(s) 432, 566, 575, 861, 1389
BseNI ACTGG 1 cut(s) 815
BseRI GAGGAG 2 cut(s) 919, 1262
BseXI GCAGC 2 cut(s) 783, 945
BseYI CCCAGC 1 cut(s) 1159
BsgI GTGCAG 3 cut(s) 42, 536, 651
Bsh1285I CGRYCG 1 cut(s) 305
BshFI GGCC 3 cut(s) 139, 496, 612
BshNI GGYRCC 1 cut(s) 676
BshVI ATCGAT 1 cut(s) 1176
BsiEI CGRYCG 1 cut(s) 305
BsiHKAI GWGCWC 1 cut(s) 10
BsiSI CCGG 2 cut(s) 131, 136
BslFI GGGAC 1 cut(s) 47
BslI CCNNNNNNNGG 2 cut(s) 903, 1137
BsmAI GTCTC 2 cut(s) 178, 786
BsmFI GGGAC 1 cut(s) 47
BsmI GAATGC 1 cut(s) 748
BsnI GGCC 3 cut(s) 139, 496, 612
Bso31I GGTCTC 1 cut(s) 178
Bsp119I TTCGAA 1 cut(s) 853
Bsp1286I GDGCHC 2 cut(s) 10, 272
Bsp1407I TGTACA 1 cut(s) 693
Bsp143I GATC 4 cut(s) 942, 1434, 1468, 1524
BspACI CCGC 4 cut(s) 197, 301, 724, 1541
BspANI GGCC 3 cut(s) 139, 496, 612
BspCNI CTCAG 5 cut(s) 433, 565, 574, 862, 1390
BspDI ATCGAT 1 cut(s) 1176
BspHI TCATGA 3 cut(s) 289, 922, 1431
BspLI GGNNCC 1 cut(s) 678
BspMAI CTGCAG 1 cut(s) 963
BspPI GGATC 2 cut(s) 1476, 1519
BspQI GCTCTTC 2 cut(s) 347, 855
BspT104I TTCGAA 1 cut(s) 853
BspT107I GGYRCC 1 cut(s) 676
BspTNI GGTCTC 1 cut(s) 178
BsrBI CCGCTC 2 cut(s) 301, 1541
BsrFI RCCGGY 1 cut(s) 135
BsrGI TGTACA 1 cut(s) 693
BsrI ACTGG 1 cut(s) 815
BssAI RCCGGY 1 cut(s) 135
BssECI CCNNGG 1 cut(s) 1518
BssMI GATC 4 cut(s) 942, 1434, 1468, 1524
BssT1I CCWWGG 1 cut(s) 1518
Bst4CI ACNGT 5 cut(s) 545, 629, 780, 1260, 1421
Bst6I CTCTTC 3 cut(s) 347, 411, 855
BstAUI TGTACA 1 cut(s) 693
BstBAI YACGTR 1 cut(s) 977
BstBI TTCGAA 1 cut(s) 853
BstC8I GCNNGC 1 cut(s) 882
BstDEI CTNAG 6 cut(s) 441, 552, 561, 870, 968, 1398
BstF5I GGATG 2 cut(s) 418, 1200
BstKTI GATC 4 cut(s) 945, 1437, 1471, 1527
BstMAI GTCTC 2 cut(s) 178, 786
BstMBI GATC 4 cut(s) 942, 1434, 1468, 1524
BstMCI CGRYCG 1 cut(s) 305
BstMWI GCNNNNNNNGC 1 cut(s) 793
BstNSI RCATGY 1 cut(s) 1495
BstSCI CCNGG 1 cut(s) 129
BstSFI CTRYAG 2 cut(s) 471, 959
BstV1I GCAGC 2 cut(s) 783, 945
BstV2I GAAGAC 1 cut(s) 1395
BstX2I RGATCY 2 cut(s) 1468, 1524
BstXI CCANNNNNNTGG 1 cut(s) 981
BstYI RGATCY 2 cut(s) 1468, 1524
Bsu15I ATCGAT 1 cut(s) 1176
Bsu36I CCTNAGG 1 cut(s) 552
BsuI GTATCC 3 cut(s) 520, 1157, 1279
BsuRI GGCC 3 cut(s) 139, 496, 612
BsuTUI ATCGAT 1 cut(s) 1176
BtsCI GGATG 2 cut(s) 418, 1200
BtsI GCAGTG 1 cut(s) 968
BtsIMutI CAGTG 5 cut(s) 200, 599, 634, 822, 968
Cac8I GCNNGC 1 cut(s) 882
CciI TCATGA 3 cut(s) 289, 922, 1431
Cfr10I RCCGGY 1 cut(s) 135
Cfr13I GGNCC 5 cut(s) 133, 138, 494, 548, 611
ClaI ATCGAT 1 cut(s) 1176
CpoI CGGWCCG 1 cut(s) 133
CseI GACGC 2 cut(s) 148, 788
Csp6I GTAC 3 cut(s) 558, 694, 827
CspI CGGWCCG 1 cut(s) 133
CviAII CATG 5 cut(s) 290, 923, 981, 1432, 1492
CviQI GTAC 3 cut(s) 558, 694, 827
DdeI CTNAG 6 cut(s) 441, 552, 561, 870, 968, 1398
DpnI GATC 4 cut(s) 944, 1436, 1470, 1526
DpnII GATC 4 cut(s) 942, 1434, 1468, 1524
DriI GACNNNNNGTC 1 cut(s) 652
Eam1104I CTCTTC 3 cut(s) 347, 411, 855
Eam1105I GACNNNNNGTC 1 cut(s) 652
EarI CTCTTC 3 cut(s) 347, 411, 855
EciI GGCGGA 1 cut(s) 739
Eco130I CCWWGG 1 cut(s) 1518
Eco24I GRGCYC 1 cut(s) 272
Eco31I GGTCTC 1 cut(s) 178
Eco47I GGWCC 2 cut(s) 133, 548
Eco72I CACGTG 1 cut(s) 977
Eco81I CCTNAGG 1 cut(s) 552
EcoO109I RGGNCCY 1 cut(s) 494
EcoRI GAATTC 1 cut(s) 52
EcoT14I CCWWGG 1 cut(s) 1518
EcoT38I GRGCYC 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 1518
FaeI CATG 5 cut(s) 293, 926, 984, 1435, 1495
FaqI GGGAC 1 cut(s) 47
FatI CATG 5 cut(s) 289, 922, 980, 1431, 1491
FbaI TGATCA 1 cut(s) 1434
FblI GTMKAC 1 cut(s) 1008
Fnu4HI GCNGC 3 cut(s) 197, 797, 959
FokI GGATG 2 cut(s) 425, 1187
FriOI GRGCYC 1 cut(s) 272
Fsp4HI GCNGC 3 cut(s) 197, 797, 959
GluI GCNGC 3 cut(s) 197, 797, 959
GsaI CCCAGC 1 cut(s) 1163
HaeIII GGCC 3 cut(s) 139, 496, 612
HapII CCGG 2 cut(s) 131, 136
HgaI GACGC 2 cut(s) 148, 788
Hin1II CATG 5 cut(s) 293, 926, 984, 1435, 1495
HinfI GANTC 8 cut(s) 108, 263, 446, 647, 727, 791, 909, 1268
HpaII CCGG 2 cut(s) 131, 136
HphI GGTGA 2 cut(s) 412, 962
Hpy166II GTNNAC 8 cut(s) 214, 541, 548, 625, 694, 803, 1009, 1143
Hpy188I TCNGA 5 cut(s) 442, 589, 732, 903, 1136
Hpy188III TCNNGA 7 cut(s) 250, 290, 665, 923, 1265, 1397, 1432
Hpy8I GTNNAC 8 cut(s) 214, 541, 548, 625, 694, 803, 1009, 1143
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 8 cut(s) 289, 485, 507, 814, 1131, 1275, 1327, 1403
HpyCH4III ACNGT 5 cut(s) 545, 629, 780, 1260, 1421
HpyCH4IV ACGT 1 cut(s) 976
HpyCH4V TGCA 6 cut(s) 59, 517, 632, 748, 961, 980
HpyF10VI GCNNNNNNNGC 1 cut(s) 793
HpyF3I CTNAG 6 cut(s) 441, 552, 561, 870, 968, 1398
HpySE526I ACGT 1 cut(s) 976
Hsp92II CATG 5 cut(s) 293, 926, 984, 1435, 1495
Ksp22I TGATCA 1 cut(s) 1434
Kzo9I GATC 4 cut(s) 942, 1434, 1468, 1524
LguI GCTCTTC 2 cut(s) 347, 855
LmnI GCTCC 2 cut(s) 5, 298
Lsp1109I GCAGC 2 cut(s) 783, 945
MaeII ACGT 1 cut(s) 976
MaeIII GTNAC 5 cut(s) 179, 916, 1112, 1181, 1254
MalI GATC 4 cut(s) 944, 1436, 1470, 1526
MbiI CCGCTC 2 cut(s) 301, 1541
MboI GATC 4 cut(s) 942, 1434, 1468, 1524
MflI RGATCY 2 cut(s) 1468, 1524
MhlI GDGCHC 2 cut(s) 10, 272
MlyI GAGTC 3 cut(s) 641, 721, 918
MmeI TCCRAC 1 cut(s) 624
MroXI GAANNNNTTC 2 cut(s) 462, 1392
MseI TTAA 2 cut(s) 1058, 1236
MslI CAYNNNNRTG 1 cut(s) 979
MspI CCGG 2 cut(s) 131, 136
MspR9I CCNGG 1 cut(s) 131
Mva1269I GAATGC 1 cut(s) 748
MwoI GCNNNNNNNGC 1 cut(s) 793
NciI CCSGG 1 cut(s) 131
NdeII GATC 4 cut(s) 942, 1434, 1468, 1524
NlaIII CATG 5 cut(s) 293, 926, 984, 1435, 1495
NlaIV GGNNCC 1 cut(s) 678
NmeAIII GCCGAG 1 cut(s) 705
NmuCI GTSAC 1 cut(s) 1181
NspI RCATGY 1 cut(s) 1495
NspV TTCGAA 1 cut(s) 853
PagI TCATGA 3 cut(s) 289, 922, 1431
PciSI GCTCTTC 2 cut(s) 347, 855
PctI GAATGC 1 cut(s) 748
PdmI GAANNNNTTC 2 cut(s) 462, 1392
PfeI GAWTC 5 cut(s) 108, 263, 446, 791, 1268
PflFI GACNNNGTC 1 cut(s) 995
PfoI TCCNGGA 1 cut(s) 129
PkrI GCNGC 3 cut(s) 198, 798, 960
PleI GAGTC 3 cut(s) 641, 721, 917
PmaCI CACGTG 1 cut(s) 977
PmlI CACGTG 1 cut(s) 977
PpsI GAGTC 3 cut(s) 641, 721, 917
Ppu21I YACGTR 1 cut(s) 977
PsiI TTATAA 1 cut(s) 1125
PspCI CACGTG 1 cut(s) 977
PspFI CCCAGC 1 cut(s) 1159
PspN4I GGNNCC 1 cut(s) 678
PspPI GGNCC 5 cut(s) 133, 138, 494, 548, 611
PstI CTGCAG 1 cut(s) 963
PsuI RGATCY 2 cut(s) 1468, 1524
PsyI GACNNNGTC 1 cut(s) 995
RsaI GTAC 3 cut(s) 559, 695, 828
RsaNI GTAC 3 cut(s) 558, 694, 827
RseI CAYNNNNRTG 1 cut(s) 979
Rsr2I CGGWCCG 1 cut(s) 133
RsrII CGGWCCG 1 cut(s) 133
SapI GCTCTTC 2 cut(s) 347, 855
SaqAI TTAA 2 cut(s) 1058, 1236
SatI GCNGC 3 cut(s) 197, 797, 959
Sau3AI GATC 4 cut(s) 942, 1434, 1468, 1524
Sau96I GGNCC 5 cut(s) 133, 138, 494, 548, 611
SchI GAGTC 3 cut(s) 641, 721, 918
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 2 cut(s) 10, 272
SfcI CTRYAG 2 cut(s) 471, 959
SfuI TTCGAA 1 cut(s) 853
SinI GGWCC 2 cut(s) 133, 548
SmiMI CAYNNNNRTG 1 cut(s) 979
SmlI CTYRAG 1 cut(s) 707
SmoI CTYRAG 1 cut(s) 707
SsiI CCGC 4 cut(s) 197, 301, 724, 1541
SspI AATATT 1 cut(s) 1191
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 1 cut(s) 1518
TaaI ACNGT 5 cut(s) 545, 629, 780, 1260, 1421
TaiI ACGT 1 cut(s) 979
TaqI TCGA 8 cut(s) 167, 251, 266, 449, 664, 853, 1176, 1504
TaqII GACCGA 2 cut(s) 447, 501
TatI WGTACW 1 cut(s) 693
TauI GCSGC 1 cut(s) 199
TfiI GAWTC 5 cut(s) 108, 263, 446, 791, 1268
Tru1I TTAA 2 cut(s) 1058, 1236
Tru9I TTAA 2 cut(s) 1058, 1236
TscAI CASTG 5 cut(s) 207, 606, 634, 822, 968
TseFI GTSAC 1 cut(s) 1181
TseI GCWGC 2 cut(s) 796, 958
Tsp45I GTSAC 1 cut(s) 1181
TspDTI ATGAA 6 cut(s) 278, 429, 849, 1313, 1341, 1420
TspGWI ACGGA 3 cut(s) 60, 365, 1120
TspRI CASTG 5 cut(s) 207, 606, 634, 822, 968
Tth111I GACNNNGTC 1 cut(s) 995
VpaK11BI GGWCC 2 cut(s) 133, 548
XapI RAATTY 5 cut(s) 52, 82, 90, 236, 1051
XceI RCATGY 1 cut(s) 1495
XmiI GTMKAC 1 cut(s) 1008
XmnI GAANNNNTTC 2 cut(s) 462, 1392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.