AT4G16280

Flowering time control protein FCA-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
9206597 .. 9214981
8385 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G16280.2

Sequence Viewer

Length: 1518 bp
ATGCGGGATGAATATAGACAGAGTCGTGGATGTGGGTTTGTTAAATATTCAAGCAAAGAGACGGCAATGGCAGCTATCGATGGTCTCAACGGAACTTATACCATGAGAGGTTGCAATCAGCCATTGATTGTTCGGTTTGCTGAGCCAAAGAGGCCTAAACCTGGCGAGTCAAGGGAAATGGCACCTCCTGTTGGACTTGGTTCAGGGCCTCGTTTTCAAGCTTCAGGACCAAGGCCTACCTCTAACTTTGGTGACTCTAGTGGGGATGTAAGCCACACAAATCCTTGGCGTCCAGCTACTTCACGAAACGTAGGCCCACCTAGTAACACTGGGATCCGTGGTGCCGGTAGTGACTTTTCCCCTAAACCAGGTCAAGCAACATTGCCTTCAAATCAGGGTGGCCCGTTAGGTGGTTATGGTGTTCCTCCCCTTAACCCTCTCCCAGTCCCTGGAGTTTCATCTTCTGCCACATTGCAACAGCAAAATCGGGCAGCTGGCCAGCATATAACACCATTAAAAAAACCTCTTCACAGTCCACAGGGTCTCCCTCTCCCCCTCCGTCCGCAAACTAATTTCCCTGGGGCCCAGGCACCCTTGCAGAATCCTTATGCTTATAGCAGCCAGTTGCCTACCTCTCAGCTGCCACCACAGCAAAACATCAGTCGTGCAACTGCTCCTCAAACTCCTTTGAACATTAATCTACGGCCAACAACTGTGTCTTCTGCAACTGTTCAATTTCCCCCTCGTTCCCAGCAGCAACCGCTACAAAAGATGCAACATCCTCCTTCTGAGCTAGCTCAGCTCTTGTCGCAGCAAACTCAGAGTCTACAAGCAACATTCCAATCGTCTCAGCAAGCAATTTCTCAGCTGCAGCAGCAGGTGCAGTCTATGCAGCAACCAAACCAAAATTTACCACTCTCACAGAATGGCCGAGCTGGTAAACAACAGTGGGCTGGATCTGCAATTCCAAGAGTGGCTAGCACCACTGGTTCGACACCAGTGAGCTATGTGCAAACAGCTGCACCTGCAGTAAGTCAGAGCGTAGGTTCTGTCAAATGTACCTGGACCGAGCATACCTCGCCTGATGGATTTAAATATTATTACAATGGTCTAACGGGTGAAAGCAAGTGGGAAAAACCTGAGGAAATGATAGTGTTCGAACGAGAGCAACAGAAACAGCAACAACATCAAGAGAAGCCAACTATACAGCAGTCCCAGACCCAATTACAGCCGTTGCAGCAACAACCACAACAAGTTCAGCAGCAATATCAGGGCCAGCAATTACAGCAGCCGTTTTATTCTTCACTGTATCCAACTCCAGGGGCCAGCCATAATACTCAGTATCCATCATTGCCAGTAGGTCAAAATAGCCAGTTTCCTATGTCAGGAATTGGTCAGAATGCTCAGGATTATGCTCGGACACATATACCCGTGGGAGCTGCTTCAATGAATGATATATCAAGAACTCAACAGAGCCGTCAATCTCCCCAAGAACTCATGTGGAAGAATAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

505

Amino Acids

54.98

Weight (kDa)

9.85

Isoelectric Point (pI)

68.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 122 - 184 1.7e-16 RNA recognition motif
RRM_1 PF00076 213 - 279 8.3e-17 RNA recognition motif
WW PF00397 597 - 622 4e-07 WW domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 868, 1033
Acc36I ACCTGC 2 cut(s) 868, 1033
AccB1I GGYRCC 3 cut(s) 181, 341, 589
AccB7I CCANNNNNTGG 1 cut(s) 449
AccI GTMKAC 1 cut(s) 826
AciI CCGC 3 cut(s) 4, 563, 761
AclWI GGATC 3 cut(s) 328, 341, 964
AcoI YGGCCR 3 cut(s) 496, 704, 928
AcsI RAATTY 1 cut(s) 907
AcuI CTGAAG 1 cut(s) 207
AcyI GRCGYC 1 cut(s) 289
AfaI GTAC 1 cut(s) 1060
AfiI CCNNNNNNNGG 7 cut(s) 161, 191, 368, 410, 449, 1319, 1385
AgsI TTSAA 6 cut(s) 51, 218, 390, 691, 734, 1446
AjnI CCWGG 7 cut(s) 160, 367, 448, 577, 585, 1061, 1318
Alw26I GTCTC 4 cut(s) 53, 89, 548, 852
AlwI GGATC 3 cut(s) 328, 341, 964
AlwNI CAGNNNCTG 1 cut(s) 449
ApaI GGGCCC 1 cut(s) 586
ApoI RAATTY 1 cut(s) 907
ArsI GACNNNNNNTTYG 4 cut(s) 646, 678, 808, 840
AseI ATTAAT 1 cut(s) 696
AspS9I GGNCC 9 cut(s) 206, 227, 314, 401, 582, 583, 1065, 1273, 1323
AsuHPI GGTGA 2 cut(s) 263, 1130
AsuII TTCGAA 1 cut(s) 1158
AsuNHI GCTAGC 2 cut(s) 793, 977
AvaII GGWCC 2 cut(s) 227, 1065
AxyI CCTNAGG 1 cut(s) 1140
BaeGI GKGCMC 1 cut(s) 586
BalI TGGCCA 1 cut(s) 498
BamHI GGATCC 1 cut(s) 333
BanI GGYRCC 3 cut(s) 181, 341, 589
BanII GRGCYC 1 cut(s) 586
BbsI GAAGAC 1 cut(s) 711
BccI CCATC 3 cut(s) 74, 1079, 1354
BceAI ACGGC 5 cut(s) 78, 719, 1216, 1276, 1461
BciT130I CCWGG 7 cut(s) 162, 369, 450, 579, 587, 1063, 1320
BciVI GTATCC 2 cut(s) 1320, 1353
BcoDI GTCTC 4 cut(s) 53, 89, 548, 852
BfaI CTAG 4 cut(s) 258, 321, 794, 978
BfmI CTRYAG 2 cut(s) 869, 1026
BfuAI ACCTGC 2 cut(s) 868, 1033
BfuI GTATCC 2 cut(s) 1320, 1353
BglI GCCNNNNNGGC 1 cut(s) 151
BlpI GCTNAGC 2 cut(s) 141, 798
Bme1390I CCNGG 7 cut(s) 162, 369, 450, 579, 587, 1063, 1320
Bme18I GGWCC 2 cut(s) 227, 1065
BmgT120I GGNCC 9 cut(s) 206, 227, 314, 401, 582, 583, 1065, 1273, 1323
BmiI GGNNCC 7 cut(s) 183, 335, 343, 583, 584, 591, 1324
BmrFI CCNGG 7 cut(s) 162, 369, 450, 579, 587, 1063, 1320
BmrI ACTGGG 2 cut(s) 339, 437
BmsI GCATC 1 cut(s) 762
BmtI GCTAGC 2 cut(s) 797, 981
BmuI ACTGGG 2 cut(s) 339, 437
BpiI GAAGAC 1 cut(s) 711
BplI GAGNNNNNCTC 2 cut(s) 1061, 1093
BpmI CTGGAG 2 cut(s) 471, 1302
Bpu10I CCTNAGC 1 cut(s) 1404
Bpu1102I GCTNAGC 2 cut(s) 141, 798
Bpu14I TTCGAA 1 cut(s) 1158
Bsa29I ATCGAT 1 cut(s) 78
BsaHI GRCGYC 1 cut(s) 289
BsaI GGTCTC 2 cut(s) 89, 548
BsaJI CCNNGG 9 cut(s) 230, 284, 337, 448, 577, 578, 585, 1319, 1431
BsaXI ACNNNNNCTCC 2 cut(s) 528, 558
Bsc4I CCNNNNNNNGG 7 cut(s) 161, 191, 368, 410, 449, 1319, 1385
Bse118I RCCGGY 1 cut(s) 344
Bse1I ACTGG 7 cut(s) 334, 443, 622, 991, 998, 1355, 1372
Bse21I CCTNAGG 1 cut(s) 1140
Bse3DI GCAATG 4 cut(s) 72, 380, 470, 1349
BseBI CCWGG 7 cut(s) 162, 369, 450, 579, 587, 1063, 1320
BseCI ATCGAT 1 cut(s) 78
BseDI CCNNGG 9 cut(s) 230, 284, 337, 448, 577, 578, 585, 1319, 1431
BseGI GGATG 4 cut(s) 13, 35, 271, 778
BseLI CCNNNNNNNGG 7 cut(s) 161, 191, 368, 410, 449, 1319, 1385
BseMI GCAATG 4 cut(s) 72, 380, 470, 1349
BseNI ACTGG 7 cut(s) 334, 443, 622, 991, 998, 1355, 1372
BseRI GAGGAG 1 cut(s) 666
BseSI GKGCMC 1 cut(s) 586
BseYI CCCAGC 1 cut(s) 750
BsgI GTGCAG 2 cut(s) 902, 1005
BshNI GGYRCC 3 cut(s) 181, 341, 589
BshVI ATCGAT 1 cut(s) 78
BsiSI CCGG 1 cut(s) 345
BslFI GGGAC 2 cut(s) 431, 1198
BslI CCNNNNNNNGG 7 cut(s) 161, 191, 368, 410, 449, 1319, 1385
BsmAI GTCTC 4 cut(s) 53, 89, 548, 852
BsmBI CGTCTC 2 cut(s) 53, 852
BsmFI GGGAC 2 cut(s) 431, 1198
BsmI GAATGC 1 cut(s) 1405
Bso31I GGTCTC 2 cut(s) 89, 548
Bsp119I TTCGAA 1 cut(s) 1158
Bsp120I GGGCCC 1 cut(s) 582
Bsp1286I GDGCHC 1 cut(s) 586
Bsp143I GATC 2 cut(s) 333, 956
Bsp1720I GCTNAGC 2 cut(s) 141, 798
BspACI CCGC 3 cut(s) 4, 563, 761
BspDI ATCGAT 1 cut(s) 78
BspLI GGNNCC 7 cut(s) 183, 335, 343, 583, 584, 591, 1324
BspMAI CTGCAG 2 cut(s) 873, 1030
BspMI ACCTGC 2 cut(s) 868, 1033
BspOI GCTAGC 2 cut(s) 797, 981
BspPI GGATC 3 cut(s) 328, 341, 964
BspT104I TTCGAA 1 cut(s) 1158
BspT107I GGYRCC 3 cut(s) 181, 341, 589
BspTNI GGTCTC 2 cut(s) 89, 548
BsrDI GCAATG 4 cut(s) 72, 380, 470, 1349
BsrFI RCCGGY 1 cut(s) 344
BsrI ACTGG 7 cut(s) 334, 443, 622, 991, 998, 1355, 1372
BssAI RCCGGY 1 cut(s) 344
BssECI CCNNGG 9 cut(s) 230, 284, 337, 448, 577, 578, 585, 1319, 1431
BssMI GATC 2 cut(s) 333, 956
BssNI GRCGYC 1 cut(s) 289
BssT1I CCWWGG 2 cut(s) 230, 284
Bst2UI CCWGG 7 cut(s) 162, 369, 450, 579, 587, 1063, 1320
Bst4CI ACNGT 5 cut(s) 533, 715, 730, 948, 1308
Bst6I CTCTTC 1 cut(s) 531
BstACI GRCGYC 1 cut(s) 289
BstAPI GCANNNNNTGC 2 cut(s) 880, 889
BstBI TTCGAA 1 cut(s) 1158
BstC8I GCNNGC 7 cut(s) 496, 500, 795, 855, 979, 1277, 1327
BstDSI CCRYGG 2 cut(s) 337, 1431
BstENI CCTNNNNNAGG 2 cut(s) 366, 1383
BstF5I GGATG 4 cut(s) 13, 35, 271, 778
BstKTI GATC 2 cut(s) 336, 959
BstMAI GTCTC 4 cut(s) 53, 89, 548, 852
BstMBI GATC 2 cut(s) 333, 956
BstNI CCWGG 7 cut(s) 162, 369, 450, 579, 587, 1063, 1320
BstSCI CCNGG 7 cut(s) 160, 367, 448, 577, 585, 1061, 1318
BstSFI CTRYAG 2 cut(s) 869, 1026
BstSLI GKGCMC 1 cut(s) 586
BstV2I GAAGAC 1 cut(s) 711
BstX2I RGATCY 2 cut(s) 333, 956
BstYI RGATCY 2 cut(s) 333, 956
Bsu15I ATCGAT 1 cut(s) 78
Bsu36I CCTNAGG 1 cut(s) 1140
BsuI GTATCC 2 cut(s) 1320, 1353
BsuTUI ATCGAT 1 cut(s) 78
BtgI CCRYGG 2 cut(s) 337, 1431
BtsCI GGATG 4 cut(s) 13, 35, 271, 778
BtsIMutI CAGTG 5 cut(s) 327, 953, 984, 1005, 1304
BveI ACCTGC 2 cut(s) 868, 1033
Cac8I GCNNGC 7 cut(s) 496, 500, 795, 855, 979, 1277, 1327
CaiI CAGNNNCTG 1 cut(s) 449
Cfr10I RCCGGY 1 cut(s) 344
Cfr13I GGNCC 9 cut(s) 206, 227, 314, 401, 582, 583, 1065, 1273, 1323
ClaI ATCGAT 1 cut(s) 78
CseI GACGC 1 cut(s) 278
CsiI ACCWGGT 1 cut(s) 367
Csp6I GTAC 1 cut(s) 1059
CviAII CATG 2 cut(s) 103, 1498
CviQI GTAC 1 cut(s) 1059
DpnI GATC 2 cut(s) 335, 958
DpnII GATC 2 cut(s) 333, 956
DraI TTTAAA 1 cut(s) 1093
EaeI YGGCCR 3 cut(s) 496, 704, 928
Eam1104I CTCTTC 1 cut(s) 531
EarI CTCTTC 1 cut(s) 531
Eco130I CCWWGG 2 cut(s) 230, 284
Eco147I AGGCCT 2 cut(s) 154, 235
Eco24I GRGCYC 1 cut(s) 586
Eco31I GGTCTC 2 cut(s) 89, 548
Eco47I GGWCC 2 cut(s) 227, 1065
Eco57I CTGAAG 1 cut(s) 207
Eco81I CCTNAGG 1 cut(s) 1140
EcoNI CCTNNNNNAGG 2 cut(s) 366, 1383
EcoO109I RGGNCCY 2 cut(s) 206, 582
EcoRII CCWGG 7 cut(s) 160, 367, 448, 577, 585, 1061, 1318
EcoT14I CCWWGG 2 cut(s) 230, 284
EcoT38I GRGCYC 1 cut(s) 586
ErhI CCWWGG 2 cut(s) 230, 284
Esp3I CGTCTC 2 cut(s) 53, 852
FaeI CATG 2 cut(s) 106, 1501
FaqI GGGAC 2 cut(s) 431, 1198
FatI CATG 2 cut(s) 102, 1497
FblI GTMKAC 1 cut(s) 826
FokI GGATG 4 cut(s) 20, 42, 278, 765
FriOI GRGCYC 1 cut(s) 586
FspBI CTAG 4 cut(s) 258, 321, 794, 978
GsaI CCCAGC 1 cut(s) 754
GsuI CTGGAG 2 cut(s) 471, 1302
HapII CCGG 1 cut(s) 345
HgaI GACGC 1 cut(s) 278
Hin1I GRCGYC 1 cut(s) 289
Hin1II CATG 2 cut(s) 106, 1501
HindIII AAGCTT 2 cut(s) 219, 1512
HinfI GANTC 5 cut(s) 22, 167, 254, 601, 823
HpaII CCGG 1 cut(s) 345
HphI GGTGA 2 cut(s) 263, 1130
Hpy166II GTNNAC 3 cut(s) 536, 827, 941
Hpy188I TCNGA 5 cut(s) 790, 822, 1038, 1398, 1419
Hpy188III TCNNGA 6 cut(s) 225, 303, 1190, 1386, 1406, 1461
Hpy8I GTNNAC 3 cut(s) 536, 827, 941
HpyAV CCTTC 2 cut(s) 396, 795
HpyCH4III ACNGT 5 cut(s) 533, 715, 730, 948, 1308
HpyCH4IV ACGT 1 cut(s) 309
HpySE526I ACGT 1 cut(s) 309
Hsp92I GRCGYC 1 cut(s) 289
Hsp92II CATG 2 cut(s) 106, 1501
Kzo9I GATC 2 cut(s) 333, 956
LmnI GCTCC 2 cut(s) 679, 1436
LweI GCATC 1 cut(s) 762
MabI ACCWGGT 1 cut(s) 367
MaeI CTAG 4 cut(s) 258, 321, 794, 978
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 3 cut(s) 251, 323, 350
MalI GATC 2 cut(s) 335, 958
MboI GATC 2 cut(s) 333, 956
MboII GAAGA 5 cut(s) 453, 518, 711, 1293, 1516
MflI RGATCY 2 cut(s) 333, 956
MhlI GDGCHC 1 cut(s) 586
MlsI TGGCCA 1 cut(s) 498
MluCI AATT 8 cut(s) 571, 734, 858, 907, 963, 1223, 1280, 1389
MluNI TGGCCA 1 cut(s) 498
MlyI GAGTC 4 cut(s) 31, 176, 248, 832
MmeI TCCRAC 2 cut(s) 172, 1337
Mox20I TGGCCA 1 cut(s) 498
MscI TGGCCA 1 cut(s) 498
MseI TTAA 5 cut(s) 42, 432, 515, 696, 1092
Msp20I TGGCCA 1 cut(s) 498
MspA1I CMGCKG 4 cut(s) 494, 640, 868, 1019
MspI CCGG 1 cut(s) 345
MspR9I CCNGG 7 cut(s) 162, 369, 450, 579, 587, 1063, 1320
Mva1269I GAATGC 1 cut(s) 1405
MvaI CCWGG 7 cut(s) 162, 369, 450, 579, 587, 1063, 1320
NdeII GATC 2 cut(s) 333, 956
NheI GCTAGC 2 cut(s) 793, 977
NlaIII CATG 2 cut(s) 106, 1501
NlaIV GGNNCC 7 cut(s) 183, 335, 343, 583, 584, 591, 1324
NmeAIII GCCGAG 1 cut(s) 956
NmuCI GTSAC 2 cut(s) 251, 350
NspV TTCGAA 1 cut(s) 1158
PaqCI CACCTGC 2 cut(s) 868, 1033
PasI CCCWGGG 1 cut(s) 578
PceI AGGCCT 2 cut(s) 154, 235
PctI GAATGC 1 cut(s) 1405
PfeI GAWTC 1 cut(s) 601
PflFI GACNNNGTC 1 cut(s) 21
PflMI CCANNNNNTGG 1 cut(s) 449
PleI GAGTC 4 cut(s) 30, 175, 248, 831
PpsI GAGTC 4 cut(s) 30, 175, 248, 831
PshBI ATTAAT 1 cut(s) 696
Psp6I CCWGG 7 cut(s) 160, 367, 448, 577, 585, 1061, 1318
PspFI CCCAGC 1 cut(s) 750
PspGI CCWGG 7 cut(s) 160, 367, 448, 577, 585, 1061, 1318
PspN4I GGNNCC 7 cut(s) 183, 335, 343, 583, 584, 591, 1324
PspOMI GGGCCC 1 cut(s) 582
PspPI GGNCC 9 cut(s) 206, 227, 314, 401, 582, 583, 1065, 1273, 1323
PstI CTGCAG 2 cut(s) 873, 1030
PstNI CAGNNNCTG 1 cut(s) 449
PsuI RGATCY 2 cut(s) 333, 956
PsyI GACNNNGTC 1 cut(s) 21
PvuII CAGCTG 4 cut(s) 494, 640, 868, 1019
RsaI GTAC 1 cut(s) 1060
RsaNI GTAC 1 cut(s) 1059
SaqAI TTAA 5 cut(s) 42, 432, 515, 696, 1092
Sau3AI GATC 2 cut(s) 333, 956
Sau96I GGNCC 9 cut(s) 206, 227, 314, 401, 582, 583, 1065, 1273, 1323
SchI GAGTC 4 cut(s) 31, 176, 248, 832
ScrFI CCNGG 7 cut(s) 162, 369, 450, 579, 587, 1063, 1320
SduI GDGCHC 1 cut(s) 586
SexAI ACCWGGT 1 cut(s) 367
SfaNI GCATC 1 cut(s) 762
SfcI CTRYAG 2 cut(s) 869, 1026
SfuI TTCGAA 1 cut(s) 1158
SinI GGWCC 2 cut(s) 227, 1065
SmiI ATTTAAAT 1 cut(s) 1093
Sse9I AATT 8 cut(s) 571, 734, 858, 907, 963, 1223, 1280, 1389
SseBI AGGCCT 2 cut(s) 154, 235
SsiI CCGC 3 cut(s) 4, 563, 761
SspI AATATT 2 cut(s) 47, 1097
SspMI CTAG 4 cut(s) 258, 321, 794, 978
StuI AGGCCT 2 cut(s) 154, 235
StyD4I CCNGG 7 cut(s) 160, 367, 448, 577, 585, 1061, 1318
StyI CCWWGG 2 cut(s) 230, 284
SwaI ATTTAAAT 1 cut(s) 1093
TaaI ACNGT 5 cut(s) 533, 715, 730, 948, 1308
TaiI ACGT 1 cut(s) 312
TaqI TCGA 3 cut(s) 78, 992, 1158
TaqII GACCGA 1 cut(s) 1082
TasI AATT 8 cut(s) 571, 734, 858, 907, 963, 1223, 1280, 1389
TfiI GAWTC 1 cut(s) 601
Tru1I TTAA 5 cut(s) 42, 432, 515, 696, 1092
Tru9I TTAA 5 cut(s) 42, 432, 515, 696, 1092
TscAI CASTG 5 cut(s) 334, 953, 991, 1005, 1311
TseFI GTSAC 2 cut(s) 251, 350
Tsp45I GTSAC 2 cut(s) 251, 350
TspDTI ATGAA 3 cut(s) 24, 447, 1463
TspGWI ACGGA 3 cut(s) 105, 326, 548
TspRI CASTG 5 cut(s) 334, 953, 991, 1005, 1311
Tth111I GACNNNGTC 1 cut(s) 21
Van91I CCANNNNNTGG 1 cut(s) 449
VpaK11BI GGWCC 2 cut(s) 227, 1065
VspI ATTAAT 1 cut(s) 696
XagI CCTNNNNNAGG 2 cut(s) 366, 1383
XapI RAATTY 1 cut(s) 907
XmiI GTMKAC 1 cut(s) 826
XspI CTAG 4 cut(s) 258, 321, 794, 978
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.