Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008816

Physical Location & Seq

Genomic Coordinates Forward (+)

15929041 .. 15938665

Gene Structure 9625 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007337

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2331 bp

ATGCCCAATACTAACTCCGGTTTCCCAAACTCCGCCAAGCTGGATAGGTACAGAGTAGACCGCTATGGCCACAACAACAACGACGACGCCCCTGACTACCGTCGTCCCTCTCTCTTCTCCGACGCCCCCGTCAACCCTCAGCCCCACCTCCCTCGCCGCAGCCCCCCTACCTACCGCGGCGCCGCCGCCGCCCGTGGCTTCGACAGTCCGCCTCTTCACTCTCCCGCTGGAGGATTCCAGCCATTGATGCCTGCCGGGCCCGCTGCTGGTGCCGGAGGGTTTCGCCCTACCCACCACGACCCTCCGCCGCTCTCCGGTCAGAAACGAGGCCATCCTTTCTCTGCCCGTGGTGGCTCTCCAGATCGTTTTGATAGAGGAGGGTTTGCCAAGCTTTTTGTTGGATCAGTTCCGAGGACAGCCACTGAGGGAGAGATTCGCCCTTTGTTTGAAGAACATGGAGAAGTGGTAGAGGTTGCGCTGATCAAAGACAAGAAAACCGGACTGCAGCAAGGTTGTTGTTTTATTAAATATGCAACCTCAGAAGAAGCTGATAGGGCCATTAGAGCTTTGCATAATCAGCATACTCTTCCTGGGGGAGTAGGTCCTATCCAAGTCAGATATGCTGATGGGGAACGAGAACGCCTTGGTGCAGTTGAGTACAAACTGTTTGTGGGCTCACTGAACAAACAAGCTACGGAAAAGGAAGTTGAGGAAATTTTTTCACCATATGGTCTAGTTGAAGATGTTTACCTCATGCGTGATGAATTGAAGCAGAGTCGTGGATGTGGATTCGTTAAGTACTCCCACCGAGATATGGCGTTGTCAGCAATAAATGGTCTAAATGGGCGCTACACTATGAGAGGTTGTGAGCAACCACTAACTGTCCGGTTTGCTGATCCTAAAAGGCCTAGGCCTGGAGAATCAAGGGGTCCTTCTTTTGGAGGTCCAGGTTTTGGTCCTCGGTTTCAAAACCCAGGGGCCAGACCAGTACCTAACTTTGGTGATCCTACGAGTGATCAAATTCCAACTAATGCTTGGCATCCAATTAGTCCACCAAACTTGGTGCCATCCCCCAATCCTGGTATTCGTGGCTTCGGGGCCCATTTGCTTCCTAGGTCTGGAGACATGGGACCCTTTAATTCGGGCGGCCATGGCGGCTCTGTAGAGGGTCCACATCCTGTGATGGCAGTTTCATCTCAAACAACACAGCAGAATCTTAACCAGTCGATGCCACATATGGGCCAGCAAATTTCCCCATTACAGAAGCATAATCAGTCACCTCAGCATTTGCCACCTTCCCTTCATCAGCACCCTCAAACTCCAGCACCCTACGCACTCACACAAACAGCACGGCAGGTTGGTCAACCACAGCTTCCTCCTCCTGCTGGCCAAACACCATTTAATCAAGCTTTACCATCACAAAGGTTACATGGGTTGGGCGGACAGCTGTCGGCCTCTCAGCCTGAGGTCCAGCAGAATGCATCATCTGCTCCTGCATTACCAACCCTTTTGAATATCAACTTAAAATCTCATTCGATGTCTGCAACAAATCAACAGCAACGTCCTTCTGCTCCTGTTCAACAACAACTTCAAACGCTTCAGCAGTCTCCTTCTCAGTTAGCTCAGATGCTGTCGCAACAGACACAAACTTTGCAGGCAAGCTTTCAATCGTCTCAGCAGGCGTTCTCGCAGCTGCAACAACAGGTGCAGCAGATGCAACCATCAAATCAGGGTCTGTCGCTGCATCAGACTTCCCAGTCCAATAAACAGCAGCAGTCTCAGTGGAATGGAATAGTACCACAGACAGTTGCAAATACCCCTGCTACAACAGCTGCAGATGTGCCTTCAGCCACATCTGTTGCTCCTGCTATACCTGTAACAAACCAGCCTATAACCCCTGCAAAATGTATTTGGACCGAGCACACCTCCCCGGATGGATACAAGTACTATTATAATAGTGCAACTGGTGAAAGCAGGTGGGAAAAACCTGCCGAACTTGCATTGTTTGAGCAACAGCAGCACCACCAAAAGACATCAGTTCAGCAGCCTCAGACCCCTTCACTACCTCAAAATCTGTCTGCGCAGCAGCAAGCTTCTCAAACACAACAGATGCATCTTCAATCTCATCTTCATCCACAGCCTCGGCCCAATCTTCAGTCGCAACAGCCATCTTTGTCTTCAATGTACCAGGCTTCTGGAATTGTAGGCCAACAAAATGCTCAGGACTTCGGATTTTCAAAGTTACCCCCGACAACCAGCTCAGTTAGTGATCCTCGCTTTCAACAGGCTGCTCAGGAATGGATGTGGAAGAACAAGCCAACAGGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 WW

Protein Analysis

777

Amino Acids

84.44

Weight (kDa)

9.36

Isoelectric Point (pI)

63.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	131 - 193	4.3e-15	RNA recognition motif
RRM_1	PF00076	222 - 289	6.6e-17	RNA recognition motif
WW	PF00397	638 - 663	1.7e-09	WW domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16280 AT4G16280 AT4G16280 AT4G16280
fragaria_vesca	FvH4_4g20210
malus_domestica	MD13G1150500.v1.1 MD16G1150700.v1.1
prunus_persica	Prupe.1G114600_v2.0.a1 Prupe.1G114600_v2.0.a1 Prupe.1G114600_v2.0.a1 Prupe.1G114600_v2.0.a1
pyrus_communis	pycom13g12930 pycom16g12910
rosa_chinensis	RchiOBHm_Chr4g0425821
rosa_laevigata	RLG00000007337
rosa_multiflora	Rmu_sc0007063.1_g000004
rosa_roxburghii	Rroxscaffold_5G00367810
rosa_rugosa	Rorug04G0206600
rosa_samantha	Rh4AG263700 Rh4BG269600 Rh4CG282000 Rh4DG266000
rosa_wichuraiana	Rw4G022760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1953
AarI	CACCTGC	1 cut(s)	1965
AasI	GACNNNNNNGTC	2 cut(s)	128, 1756
Acc16I	TGCGCA	1 cut(s)	2082
Acc36I	ACCTGC	3 cut(s)	1345, 1965, 1996
AccB1I	GGYRCC	3 cut(s)	179, 269, 1063
AccB7I	CCANNNNNTGG	1 cut(s)	953
AccBSI	CCGCTC	1 cut(s)	310
AccI	GTMKAC	1 cut(s)	57
AccII	CGCG	1 cut(s)	177
AclWI	GGATC	4 cut(s)	409, 890, 998, 2264
AcoI	YGGCCR	3 cut(s)	67, 1147, 1387
AcsI	RAATTY	3 cut(s)	714, 1020, 1248
AcuI	CTGAAG	3 cut(s)	1583, 1830, 2138
AcyI	GRCGYC	3 cut(s)	87, 123, 180
AfaI	GTAC	7 cut(s)	50, 659, 800, 990, 1797, 1946, 2186
AjnI	CCWGG	6 cut(s)	589, 913, 946, 973, 1078, 2187
Alw21I	GWGCWC	1 cut(s)	1923
Alw26I	GTCTC	4 cut(s)	1116, 1611, 1677, 1782
AlwI	GGATC	4 cut(s)	409, 890, 998, 2264
AlwNI	CAGNNNCTG	3 cut(s)	422, 1630, 1735
ApaI	GGGCCC	2 cut(s)	261, 1102
ApoI	RAATTY	3 cut(s)	714, 1020, 1248
ArsI	GACNNNNNNTTYG	2 cut(s)	1633, 1665
AspA2I	CCTAGG	2 cut(s)	908, 1112
AspLEI	GCGC	4 cut(s)	182, 478, 849, 2083
AsuC2I	CCSGG	2 cut(s)	256, 1931
AsuHPI	GGTGA	4 cut(s)	714, 1013, 1269, 1979
AvaII	GGWCC	8 cut(s)	602, 929, 944, 956, 1130, 1169, 1468, 1914
AvrII	CCTAGG	2 cut(s)	908, 1112
AxyI	CCTNAGG	1 cut(s)	1464
BaeGI	GKGCMC	2 cut(s)	261, 1102
BalI	TGGCCA	2 cut(s)	69, 1389
BanI	GGYRCC	3 cut(s)	179, 269, 1063
BanII	GRGCYC	3 cut(s)	261, 677, 1102
BbsI	GAAGAC	1 cut(s)	2169
Bbv12I	GWGCWC	1 cut(s)	1923
BbvCI	CCTCAGC	2 cut(s)	138, 1281
BccI	CCATC	8 cut(s)	339, 620, 1075, 1177, 1423, 1729, 1928, 2176
BceAI	ACGGC	1 cut(s)	1367
BciT130I	CCWGG	6 cut(s)	591, 915, 948, 975, 1080, 2189
BciVI	GTATCC	1 cut(s)	1931
BclI	TGATCA	2 cut(s)	480, 1015
BcnI	CCSGG	2 cut(s)	256, 1931
BcoDI	GTCTC	4 cut(s)	1116, 1611, 1677, 1782
BfaI	CTAG	3 cut(s)	734, 909, 1113
BfmI	CTRYAG	3 cut(s)	503, 1161, 1833
BfoI	RGCGCY	2 cut(s)	183, 850
BfuAI	ACCTGC	3 cut(s)	1345, 1965, 1996
BfuI	GTATCC	1 cut(s)	1931
BglI	GCCNNNNNGGC	2 cut(s)	256, 1155
BlnI	CCTAGG	2 cut(s)	908, 1112
BmcAI	AGTACT	2 cut(s)	800, 1946
Bme1390I	CCNGG	8 cut(s)	256, 591, 915, 948, 975, 1080, 1931, 2189
Bme18I	GGWCC	8 cut(s)	602, 929, 944, 956, 1130, 1169, 1468, 1914
BmrFI	CCNGG	8 cut(s)	256, 591, 915, 948, 975, 1080, 1931, 2189
BmrI	ACTGGG	1 cut(s)	1750
BmsI	GCATC	9 cut(s)	237, 1048, 1218, 1490, 1617, 1704, 1753, 2100, 2122
BmuI	ACTGGG	1 cut(s)	1750
BoxI	GACNNNNGTC	2 cut(s)	99, 1447
BpiI	GAAGAC	1 cut(s)	2169
BplI	GAGNNNNNCTC	2 cut(s)	1910, 1942
BpmI	CTGGAG	5 cut(s)	249, 342, 936, 1140, 1305
Bpu10I	CCTNAGC	4 cut(s)	138, 1281, 2220, 2292
BpuMI	CCSGG	2 cut(s)	256, 1931
BsaHI	GRCGYC	3 cut(s)	87, 123, 180
BsaWI	WCCGGW	4 cut(s)	17, 314, 497, 885
BsaXI	ACNNNNNCTCC	2 cut(s)	450, 480
Bse1I	ACTGG	4 cut(s)	986, 1222, 1756, 1969
Bse21I	CCTNAGG	1 cut(s)	1464
BseBI	CCWGG	6 cut(s)	591, 915, 948, 975, 1080, 2189
BseGI	GGATG	8 cut(s)	331, 788, 1039, 1067, 1174, 1939, 2131, 2307
BseNI	ACTGG	4 cut(s)	986, 1222, 1756, 1969
BseRI	GAGGAG	2 cut(s)	390, 1368
BseSI	GKGCMC	2 cut(s)	261, 1102
BsgI	GTGCAG	2 cut(s)	669, 1727
Bsh1236I	CGCG	1 cut(s)	177
BshNI	GGYRCC	3 cut(s)	179, 269, 1063
BsiHKAI	GWGCWC	1 cut(s)	1923
BsiSI	CCGG	7 cut(s)	18, 255, 273, 315, 498, 886, 1931
BslFI	GGGAC	2 cut(s)	90, 1143
BsmAI	GTCTC	4 cut(s)	1116, 1611, 1677, 1782
BsmBI	CGTCTC	1 cut(s)	1677
BsmFI	GGGAC	2 cut(s)	90, 1143
BsmI	GAATGC	1 cut(s)	1483
Bsp120I	GGGCCC	2 cut(s)	257, 1098
Bsp1286I	GDGCHC	4 cut(s)	261, 677, 1102, 1923
Bsp143I	GATC	7 cut(s)	361, 401, 480, 895, 1003, 1015, 2269
Bsp19I	CCATGG	1 cut(s)	1150
BspFNI	CGCG	1 cut(s)	177
BspMAI	CTGCAG	2 cut(s)	507, 1837
BspMI	ACCTGC	3 cut(s)	1345, 1965, 1996
BspPI	GGATC	4 cut(s)	409, 890, 998, 2264
BspT107I	GGYRCC	3 cut(s)	179, 269, 1063
BsrBI	CCGCTC	1 cut(s)	310
BsrI	ACTGG	4 cut(s)	986, 1222, 1756, 1969
BssMI	GATC	7 cut(s)	361, 401, 480, 895, 1003, 1015, 2269
BssNI	GRCGYC	3 cut(s)	87, 123, 180
BssT1I	CCWWGG	4 cut(s)	643, 908, 1112, 1150
Bst2UI	CCWGG	6 cut(s)	591, 915, 948, 975, 1080, 2189
Bst4CI	ACNGT	5 cut(s)	101, 206, 666, 883, 1807
Bst6I	CTCTTC	3 cut(s)	119, 219, 591
BstACI	GRCGYC	3 cut(s)	87, 123, 180
BstAPI	GCANNNNNTGC	2 cut(s)	1487, 1714
BstC8I	GCNNGC	8 cut(s)	252, 261, 1244, 1387, 1656, 1660, 1680, 2091
BstDSI	CCRYGG	4 cut(s)	175, 193, 346, 1150
BstF5I	GGATG	8 cut(s)	331, 788, 1039, 1067, 1174, 1939, 2131, 2307
BstFNI	CGCG	1 cut(s)	177
BstH2I	RGCGCY	2 cut(s)	183, 850
BstHHI	GCGC	4 cut(s)	182, 478, 849, 2083
BstKTI	GATC	7 cut(s)	364, 404, 483, 898, 1006, 1018, 2272
BstMAI	GTCTC	4 cut(s)	1116, 1611, 1677, 1782
BstMBI	GATC	7 cut(s)	361, 401, 480, 895, 1003, 1015, 2269
BstNI	CCWGG	6 cut(s)	591, 915, 948, 975, 1080, 2189
BstPAI	GACNNNNGTC	2 cut(s)	99, 1447
BstSCI	CCNGG	8 cut(s)	254, 589, 913, 946, 973, 1078, 1929, 2187
BstSFI	CTRYAG	3 cut(s)	503, 1161, 1833
BstSLI	GKGCMC	2 cut(s)	261, 1102
BstUI	CGCG	1 cut(s)	177
BstV2I	GAAGAC	1 cut(s)	2169
BstXI	CCANNNNNNTGG	1 cut(s)	2195
Bsu36I	CCTNAGG	1 cut(s)	1464
BsuI	GTATCC	1 cut(s)	1931
BtgI	CCRYGG	4 cut(s)	175, 193, 346, 1150
BtsCI	GGATG	8 cut(s)	331, 788, 1039, 1067, 1174, 1939, 2131, 2307
BtsIMutI	CAGTG	3 cut(s)	420, 677, 1787
BveI	ACCTGC	3 cut(s)	1345, 1965, 1996
Cac8I	GCNNGC	8 cut(s)	252, 261, 1244, 1387, 1656, 1660, 1680, 2091
CaiI	CAGNNNCTG	3 cut(s)	422, 1630, 1735
CfoI	GCGC	4 cut(s)	182, 478, 849, 2083
Cfr42I	CCGCGG	1 cut(s)	178
CseI	GACGC	2 cut(s)	95, 131
Csp6I	GTAC	7 cut(s)	49, 658, 799, 989, 1796, 1945, 2185
CspCI	CAANNNNNGTGG	4 cut(s)	1041, 1076, 1840, 1875
CviAII	CATG	5 cut(s)	455, 754, 1126, 1151, 1430
CviQI	GTAC	7 cut(s)	49, 658, 799, 989, 1796, 1945, 2185
DinI	GGCGCC	1 cut(s)	181
DpnI	GATC	7 cut(s)	363, 403, 482, 897, 1005, 1017, 2271
DpnII	GATC	7 cut(s)	361, 401, 480, 895, 1003, 1015, 2269
DrdI	GACNNNNNNGTC	2 cut(s)	128, 1756
DseDI	GACNNNNNNGTC	2 cut(s)	128, 1756
EaeI	YGGCCR	3 cut(s)	67, 1147, 1387
Eam1104I	CTCTTC	3 cut(s)	119, 219, 591
EarI	CTCTTC	3 cut(s)	119, 219, 591
EciI	GGCGGA	4 cut(s)	22, 198, 294, 1455
Eco130I	CCWWGG	4 cut(s)	643, 908, 1112, 1150
Eco147I	AGGCCT	2 cut(s)	907, 913
Eco24I	GRGCYC	3 cut(s)	261, 677, 1102
Eco47I	GGWCC	8 cut(s)	602, 929, 944, 956, 1130, 1169, 1468, 1914
Eco57I	CTGAAG	3 cut(s)	1583, 1830, 2138
Eco81I	CCTNAGG	1 cut(s)	1464
EcoO109I	RGGNCCY	4 cut(s)	602, 929, 1098, 1130
EcoRII	CCWGG	6 cut(s)	589, 913, 946, 973, 1078, 2187
EcoT14I	CCWWGG	4 cut(s)	643, 908, 1112, 1150
EcoT22I	ATGCAT	2 cut(s)	1483, 2115
EcoT38I	GRGCYC	3 cut(s)	261, 677, 1102
EgeI	GGCGCC	1 cut(s)	181
EheI	GGCGCC	1 cut(s)	181
ErhI	CCWWGG	4 cut(s)	643, 908, 1112, 1150
Esp3I	CGTCTC	1 cut(s)	1677
FaeI	CATG	5 cut(s)	458, 757, 1129, 1154, 1433
FalI	AAGNNNNNCTT	2 cut(s)	916, 948
FaqI	GGGAC	2 cut(s)	90, 1143
FatI	CATG	5 cut(s)	454, 753, 1125, 1150, 1429
FauI	CCCGC	2 cut(s)	232, 268
FauNDI	CATATG	2 cut(s)	727, 1236
FbaI	TGATCA	2 cut(s)	480, 1015
FblI	GTMKAC	1 cut(s)	57
FokI	GGATG	8 cut(s)	318, 795, 1026, 1054, 1161, 1946, 2118, 2314
FriOI	GRGCYC	3 cut(s)	261, 677, 1102
FspBI	CTAG	3 cut(s)	734, 909, 1113
FspI	TGCGCA	1 cut(s)	2082
GlaI	GCGC	4 cut(s)	181, 477, 848, 2082
GsuI	CTGGAG	5 cut(s)	249, 342, 936, 1140, 1305
HaeII	RGCGCY	2 cut(s)	183, 850
HapII	CCGG	7 cut(s)	18, 255, 273, 315, 498, 886, 1931
HgaI	GACGC	2 cut(s)	95, 131
HhaI	GCGC	4 cut(s)	182, 478, 849, 2083
Hin1I	GRCGYC	3 cut(s)	87, 123, 180
Hin1II	CATG	5 cut(s)	458, 757, 1129, 1154, 1433
Hin6I	GCGC	4 cut(s)	180, 476, 847, 2081
HinP1I	GCGC	4 cut(s)	180, 476, 847, 2081
HincII	GTYRAC	2 cut(s)	133, 1364
HindII	GTYRAC	2 cut(s)	133, 1364
HindIII	AAGCTT	4 cut(s)	389, 1407, 1660, 2091
HinfI	GANTC	6 cut(s)	234, 433, 775, 789, 920, 1213
HpaII	CCGG	7 cut(s)	18, 255, 273, 315, 498, 886, 1931
HphI	GGTGA	4 cut(s)	714, 1013, 1269, 1979
Hpy166II	GTNNAC	6 cut(s)	58, 133, 748, 1052, 1172, 1364
Hpy188I	TCNGA	9 cut(s)	121, 321, 411, 541, 617, 1626, 1749, 2052, 2231
Hpy188III	TCNNGA	5 cut(s)	359, 1119, 2196, 2222, 2294
Hpy8I	GTNNAC	6 cut(s)	58, 133, 748, 1052, 1172, 1364
Hpy99I	CGWCG	4 cut(s)	86, 89, 105, 125
HpyAV	CCTTC	7 cut(s)	942, 1305, 1310, 1575, 1620, 1854, 2067
HpyCH4III	ACNGT	5 cut(s)	101, 206, 666, 883, 1807
HpyCH4IV	ACGT	1 cut(s)	1561
HpySE526I	ACGT	1 cut(s)	1561
Hsp92I	GRCGYC	3 cut(s)	87, 123, 180
Hsp92II	CATG	5 cut(s)	458, 757, 1129, 1154, 1433
HspAI	GCGC	4 cut(s)	180, 476, 847, 2081
KasI	GGCGCC	1 cut(s)	179
KflI	GGGWCCC	1 cut(s)	1130
Ksp22I	TGATCA	2 cut(s)	480, 1015
KspI	CCGCGG	1 cut(s)	178
Kzo9I	GATC	7 cut(s)	361, 401, 480, 895, 1003, 1015, 2269
LmnI	GCTCC	3 cut(s)	1495, 1576, 1867
LweI	GCATC	9 cut(s)	237, 1048, 1218, 1490, 1617, 1704, 1753, 2100, 2122
MaeI	CTAG	3 cut(s)	734, 909, 1113
MaeII	ACGT	1 cut(s)	1561
MaeIII	GTNAC	4 cut(s)	1275, 1425, 1876, 2241
MalI	GATC	7 cut(s)	363, 403, 482, 897, 1005, 1017, 2271
MbiI	CCGCTC	1 cut(s)	310
MboI	GATC	7 cut(s)	361, 401, 480, 895, 1003, 1015, 2269
MhlI	GDGCHC	4 cut(s)	261, 677, 1102, 1923
MlsI	TGGCCA	2 cut(s)	69, 1389
MluCI	AATT	7 cut(s)	714, 764, 1020, 1044, 1138, 1248, 2199
MluNI	TGGCCA	2 cut(s)	69, 1389
Mly113I	GGCGCC	1 cut(s)	180
MlyI	GAGTC	1 cut(s)	784
MmeI	TCCRAC	3 cut(s)	144, 379, 1049
Mox20I	TGGCCA	2 cut(s)	69, 1389
Mph1103I	ATGCAT	2 cut(s)	1483, 2115
MscI	TGGCCA	2 cut(s)	69, 1389
MseI	TTAA	6 cut(s)	525, 795, 1137, 1218, 1401, 1523
Msp20I	TGGCCA	2 cut(s)	69, 1389
MspA1I	CMGCKG	6 cut(s)	177, 227, 263, 1447, 1693, 1832
MspI	CCGG	7 cut(s)	18, 255, 273, 315, 498, 886, 1931
MspR9I	CCNGG	8 cut(s)	256, 591, 915, 948, 975, 1080, 1931, 2189
Mva1269I	GAATGC	1 cut(s)	1483
MvaI	CCWGG	6 cut(s)	591, 915, 948, 975, 1080, 2189
MvnI	CGCG	1 cut(s)	177
NarI	GGCGCC	1 cut(s)	180
NciI	CCSGG	2 cut(s)	256, 1931
NcoI	CCATGG	1 cut(s)	1150
NdeI	CATATG	2 cut(s)	727, 1236
NdeII	GATC	7 cut(s)	361, 401, 480, 895, 1003, 1015, 2269
NlaIII	CATG	5 cut(s)	458, 757, 1129, 1154, 1433
NmeAIII	GCCGAG	1 cut(s)	2122
NmuCI	GTSAC	1 cut(s)	1275
NsbI	TGCGCA	1 cut(s)	2082
NsiI	ATGCAT	2 cut(s)	1483, 2115
PaqCI	CACCTGC	1 cut(s)	1965
PasI	CCCWGGG	1 cut(s)	974
PceI	AGGCCT	2 cut(s)	907, 913
PctI	GAATGC	1 cut(s)	1483
PfeI	GAWTC	5 cut(s)	234, 433, 789, 920, 1213
PflMI	CCANNNNNTGG	1 cut(s)	953
PleI	GAGTC	1 cut(s)	783
PluTI	GGCGCC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	783
PpuMI	RGGWCCY	3 cut(s)	602, 929, 1130
PshAI	GACNNNNGTC	2 cut(s)	99, 1447
PsiI	TTATAA	1 cut(s)	1953
Psp5II	RGGWCCY	3 cut(s)	602, 929, 1130
Psp6I	CCWGG	6 cut(s)	589, 913, 946, 973, 1078, 2187
PspGI	CCWGG	6 cut(s)	589, 913, 946, 973, 1078, 2187
PspOMI	GGGCCC	2 cut(s)	257, 1098
PspPPI	RGGWCCY	3 cut(s)	602, 929, 1130
PstI	CTGCAG	2 cut(s)	507, 1837
PstNI	CAGNNNCTG	3 cut(s)	422, 1630, 1735
PvuII	CAGCTG	3 cut(s)	1447, 1693, 1832
RsaI	GTAC	7 cut(s)	50, 659, 800, 990, 1797, 1946, 2186
RsaNI	GTAC	7 cut(s)	49, 658, 799, 989, 1796, 1945, 2185
SacII	CCGCGG	1 cut(s)	178
SaqAI	TTAA	6 cut(s)	525, 795, 1137, 1218, 1401, 1523
Sau3AI	GATC	7 cut(s)	361, 401, 480, 895, 1003, 1015, 2269
ScaI	AGTACT	2 cut(s)	800, 1946
SchI	GAGTC	1 cut(s)	784
ScrFI	CCNGG	8 cut(s)	256, 591, 915, 948, 975, 1080, 1931, 2189
SduI	GDGCHC	4 cut(s)	261, 677, 1102, 1923
SfaNI	GCATC	9 cut(s)	237, 1048, 1218, 1490, 1617, 1704, 1753, 2100, 2122
SfcI	CTRYAG	3 cut(s)	503, 1161, 1833
SfoI	GGCGCC	1 cut(s)	181
Sfr303I	CCGCGG	1 cut(s)	178
SgrBI	CCGCGG	1 cut(s)	178
SinI	GGWCC	8 cut(s)	602, 929, 944, 956, 1130, 1169, 1468, 1914
Sse9I	AATT	7 cut(s)	714, 764, 1020, 1044, 1138, 1248, 2199
SseBI	AGGCCT	2 cut(s)	907, 913
SspDI	GGCGCC	1 cut(s)	179
SspMI	CTAG	3 cut(s)	734, 909, 1113
StuI	AGGCCT	2 cut(s)	907, 913
StyD4I	CCNGG	8 cut(s)	254, 589, 913, 946, 973, 1078, 1929, 2187
StyI	CCWWGG	4 cut(s)	643, 908, 1112, 1150
TaaI	ACNGT	5 cut(s)	101, 206, 666, 883, 1807
TaiI	ACGT	1 cut(s)	1564
TaqI	TCGA	3 cut(s)	201, 1226, 1535
TaqII	GACCGA	1 cut(s)	1931
TasI	AATT	7 cut(s)	714, 764, 1020, 1044, 1138, 1248, 2199
TatI	WGTACW	3 cut(s)	657, 798, 1944
TauI	GCSGC	8 cut(s)	159, 180, 185, 188, 191, 310, 1149, 1158
TfiI	GAWTC	5 cut(s)	234, 433, 789, 920, 1213
Tru1I	TTAA	6 cut(s)	525, 795, 1137, 1218, 1401, 1523
Tru9I	TTAA	6 cut(s)	525, 795, 1137, 1218, 1401, 1523
TscAI	CASTG	3 cut(s)	427, 684, 1787
TseFI	GTSAC	1 cut(s)	1275
Tsp45I	GTSAC	1 cut(s)	1275
TspDTI	ATGAA	4 cut(s)	777, 1182, 1292, 2120
TspGWI	ACGGA	1 cut(s)	710
TspRI	CASTG	3 cut(s)	427, 684, 1787
Van91I	CCANNNNNTGG	1 cut(s)	953
VpaK11BI	GGWCC	8 cut(s)	602, 929, 944, 956, 1130, 1169, 1468, 1914
XapI	RAATTY	3 cut(s)	714, 1020, 1248
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1032
XmaJI	CCTAGG	2 cut(s)	908, 1112
XmiI	GTMKAC	1 cut(s)	57
XspI	CTAG	3 cut(s)	734, 909, 1113
ZrmI	AGTACT	2 cut(s)	800, 1946
Zsp2I	ATGCAT	2 cut(s)	1483, 2115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.