Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0008816

Physical Location & Seq

Genomic Coordinates Reverse (-)

48509234 .. 48526829

Gene Structure 17596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG266000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2310 bp

ATGTTGTTTGGTAGCAGGTACAGAGTAGACCGCTATGGCCACAACGACGACGACGCCCCTGACTACCGTCGTCCCTCTCTCTTCTCCGACGCCCCCGTCAACCCTCAGCCCCACCTCCCTCGCCGCAGCCCCCCTAACTACCGCGGCGCCGGCGCCGCCCGTGGCTTCGACAGTCCGCCTCTTCACTCTCCCGCAGGAGGATTCCAGCCATTGACGCCCGCCGGACCCGCTGCCGGTGCCGGAGGGTTTCGCCCTTCCCACCCCGACCCTCCGCCGCTCTCCGGTCAGAAACGAGGCCATCCTTTCTCTGCCCGTGGTGGCTCTCCAGATCGTTTTGATAGAGGAGGGTTTGCCAAGCTTTTTGTTGGATCAGTTCCGAGGACAGCCACTGAGGGAGAGATTCGCCCTTTGTTTGAAGAACATGGAGAAGTGGTAGAGGTTGCGCTGATCAAAGACAAGAAAACCGGACTGCAGCAAGGTTGTTGTTTTATTAAATATGCAACCTCAGAAGAAGCTGATAGGGCCATTAGAGCTTTGCATAATCAGCATACTCTTCCTGGGGGAGTAGGTCCTATCCAAGTCAGATATGCTGATGGGGAACGAGAACGCCTTGGTGCAGTTGAGTACAAACTGTTTGTGGGCTCACTGAACAAACAAGCTACGGAAAAGGAAGTTGAGGAAATTTTTTCACCATATGGTCTAGTTGAAGATGTTTACCTCATGCGTGATGAATTGAAGCAGAGTCGTGGATGTGGATTCGTGAAGTATTCCCACCGAGATATGGCGTTGTCAGCAATAAATGGTCTAAACGGGCGCTACACTATGAGAGGTTGTGAGCAACCACTAACTGTCCGGTTTGCTGATCCTAAAAGGCCTAGGCCTGGAGAATCAAGGGGTCCTTCTTTTGGAGGTCCAGGTTTTGGTCCTCGGTTTCAAAGCCCAGGGGTCAGACCAGTACCTAACTTTGGTGATCCTACAAGTGATCAAATTCCAACTAATGCTTGGCATCCAATTAGTCCACCAAACTTGGTGCCATCCCCCAATCCTGGTATTCGTGGCTTCGGGGCCCATTTGCTTCCTAGGTCTGGAGACATGGGACCCTTTAATTCGGGCGGCCATGGCAGCTCTGTAGAGGGTCCACATCCTGTGATGGCAGTTTCATCTCAAACAACACAGCAGAATCTTAACCAGTCGATGCCACATATGGGCCAGCAAATTTCCCCATTACAGAAGCATAATCAGTCACCTCAGCATATGCCACCTTCCCTTCATCAGCACCCTCAAACTCCAGCACCCTACGCACTCACACAAACAGCACGGCAGGTTGGTCAACCACAGCTTCCTCCTCCTGCTGGCCAAACACCATTTAATCAAGCTTTACCATCACAAAGGTTACATGGGTTGGGCGGACAGCTGTCGGCCTCTCAGCCTGAGGTCCAGCAGAATGCATCATCTGCTCCTGCATTACCAACCCTTTTGAATATCAACTTAAAATCTCATTCGATGTCTGCAACAAATCAACAGCAACGTCCTTCTGCTCCTGTTCAACAACAACTTCAAACGCTTCAGCAGTCTCCTTCTCAGTTAGCTCAGATGCTGTCGCAACAGACACAAACTTTGCAGGCAAGCTTTCAATCGTCTCAGCAGGCGTTCTCACAGCTGCAACAACAGGTGCAGCAAATGCAACCATCAAATCAGGGTCTGTCGCTGCATCAGACTTCCCAGTCCAACAAACAGCAGCAGTCTCAGTGGAATGGAATAGGACCACAGACAGTTGCAAATACCCCTGCTACAACACCAGCTGCAGATGTGCCTTCAGCCACATCTGTTGCTCCTGCTATACCTGTAACAAACCAGACTGTAACTCCTGCAAAATGTATTTGGACAGAGCACACCTCCCCGGATGGATACAAGTACTATTATAATAGTGCAACTGGTGAAAGCAGGTGGGAAAAACCTGCTGAACTTGCATTGTTTGAGCAACAGCAGCACCACCAAAAGACATCAGTTCAGCAGCCTCAGACCCCTTCACTACCTCAAAATCTATCTGCGCAGCAGCAAGCATCTCAAACACAACAGATGCATCTTCAATCTCATCTTCATCCACAGCCTCGGCCCAATCTTCAGTCGCAACAGCCATCTTTGTCTTCAACGTACCAGGCTTCTGGAATTGTAGGCCAACAAAATGCTCAGGACTTCGGATTTTCAAAGTTACCCCCGACAACCAGCTCAGTTAGTGATCCTCGCTTCCAACAGGGGCTTCAGGCTGCTCAGGAATGGATGTGGAAGAACAAGCCAACAGGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 WW

Protein Analysis

769

Amino Acids

83.56

Weight (kDa)

9.31

Isoelectric Point (pI)

64.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	120 - 182	4.2e-15	RNA recognition motif
RRM_1	PF00076	211 - 278	6.5e-17	RNA recognition motif
WW	PF00397	628 - 653	1.7e-09	WW domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16280 AT4G16280 AT4G16280 AT4G16280
fragaria_vesca	FvH4_4g20210
malus_domestica	MD13G1150500.v1.1 MD16G1150700.v1.1
prunus_persica	Prupe.1G114600_v2.0.a1 Prupe.1G114600_v2.0.a1 Prupe.1G114600_v2.0.a1 Prupe.1G114600_v2.0.a1
pyrus_communis	pycom13g12930 pycom16g12910
rosa_chinensis	RchiOBHm_Chr4g0425821
rosa_laevigata	RLG00000007337
rosa_multiflora	Rmu_sc0007063.1_g000004
rosa_roxburghii	Rroxscaffold_5G00367810
rosa_rugosa	Rorug04G0206600
rosa_samantha	Rh4AG263700 Rh4BG269600 Rh4CG282000 Rh4DG266000
rosa_wichuraiana	Rw4G022760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1923
AarI	CACCTGC	1 cut(s)	1935
AasI	GACNNNNNNGTC	2 cut(s)	95, 1723
Acc16I	TGCGCA	1 cut(s)	2052
Acc36I	ACCTGC	4 cut(s)	6, 1312, 1935, 1966
AccB1I	GGYRCC	4 cut(s)	146, 152, 236, 1030
AccB7I	CCANNNNNTGG	1 cut(s)	920
AccBSI	CCGCTC	1 cut(s)	277
AccI	GTMKAC	1 cut(s)	27
AccII	CGCG	1 cut(s)	144
AclWI	GGATC	4 cut(s)	376, 857, 965, 2234
AcoI	YGGCCR	3 cut(s)	37, 1114, 1354
AcsI	RAATTY	3 cut(s)	681, 987, 1215
AcuI	CTGAAG	4 cut(s)	1550, 1800, 2108, 2246
AcyI	GRCGYC	5 cut(s)	54, 90, 147, 153, 215
AfaI	GTAC	5 cut(s)	20, 626, 957, 1916, 2156
AjnI	CCWGG	6 cut(s)	556, 880, 913, 940, 1045, 2157
AjuI	GAANNNNNNNTTGG	2 cut(s)	2244, 2276
Alw21I	GWGCWC	1 cut(s)	1893
Alw26I	GTCTC	4 cut(s)	1083, 1578, 1644, 1749
AlwI	GGATC	4 cut(s)	376, 857, 965, 2234
AlwNI	CAGNNNCTG	3 cut(s)	389, 1597, 1702
ApaI	GGGCCC	1 cut(s)	1069
ApoI	RAATTY	3 cut(s)	681, 987, 1215
ArsI	GACNNNNNNTTYG	2 cut(s)	1600, 1632
AspA2I	CCTAGG	2 cut(s)	875, 1079
AspLEI	GCGC	5 cut(s)	149, 155, 445, 816, 2053
AsuC2I	CCSGG	1 cut(s)	1901
AsuHPI	GGTGA	4 cut(s)	681, 980, 1236, 1949
AvaII	GGWCC	9 cut(s)	224, 569, 896, 911, 923, 1097, 1136, 1435, 1763
AvrII	CCTAGG	2 cut(s)	875, 1079
AxyI	CCTNAGG	1 cut(s)	1431
BaeGI	GKGCMC	1 cut(s)	1069
BalI	TGGCCA	2 cut(s)	39, 1356
BanI	GGYRCC	4 cut(s)	146, 152, 236, 1030
BanII	GRGCYC	2 cut(s)	644, 1069
BbsI	GAAGAC	1 cut(s)	2139
Bbv12I	GWGCWC	1 cut(s)	1893
BbvCI	CCTCAGC	2 cut(s)	105, 1248
BccI	CCATC	8 cut(s)	306, 587, 1042, 1144, 1390, 1696, 1898, 2146
BceAI	ACGGC	1 cut(s)	1334
BciT130I	CCWGG	6 cut(s)	558, 882, 915, 942, 1047, 2159
BciVI	GTATCC	1 cut(s)	1901
BclI	TGATCA	2 cut(s)	447, 982
BcnI	CCSGG	1 cut(s)	1901
BcoDI	GTCTC	4 cut(s)	1083, 1578, 1644, 1749
BfaI	CTAG	3 cut(s)	701, 876, 1080
BfmI	CTRYAG	3 cut(s)	470, 1128, 1803
BfoI	RGCGCY	3 cut(s)	150, 156, 817
BfuAI	ACCTGC	4 cut(s)	6, 1312, 1935, 1966
BfuI	GTATCC	1 cut(s)	1901
BlnI	CCTAGG	2 cut(s)	875, 1079
BmcAI	AGTACT	1 cut(s)	1916
Bme1390I	CCNGG	7 cut(s)	558, 882, 915, 942, 1047, 1901, 2159
Bme18I	GGWCC	9 cut(s)	224, 569, 896, 911, 923, 1097, 1136, 1435, 1763
BmrFI	CCNGG	7 cut(s)	558, 882, 915, 942, 1047, 1901, 2159
BmrI	ACTGGG	1 cut(s)	1717
BmsI	GCATC	8 cut(s)	1015, 1185, 1457, 1584, 1720, 2070, 2072, 2092
BmuI	ACTGGG	1 cut(s)	1717
BoxI	GACNNNNGTC	2 cut(s)	66, 1414
BpiI	GAAGAC	1 cut(s)	2139
BplI	GAGNNNNNCTC	2 cut(s)	1880, 1912
BpmI	CTGGAG	4 cut(s)	309, 903, 1107, 1272
Bpu10I	CCTNAGC	4 cut(s)	105, 1248, 2190, 2271
BpuMI	CCSGG	1 cut(s)	1901
BsaHI	GRCGYC	5 cut(s)	54, 90, 147, 153, 215
BsaWI	WCCGGW	3 cut(s)	281, 464, 852
BsaXI	ACNNNNNCTCC	4 cut(s)	417, 447, 1849, 1879
Bse118I	RCCGGY	2 cut(s)	149, 233
Bse1I	ACTGG	4 cut(s)	953, 1189, 1723, 1939
Bse21I	CCTNAGG	1 cut(s)	1431
BseBI	CCWGG	6 cut(s)	558, 882, 915, 942, 1047, 2159
BseGI	GGATG	8 cut(s)	298, 755, 1006, 1034, 1141, 1909, 2101, 2286
BseNI	ACTGG	4 cut(s)	953, 1189, 1723, 1939
BseRI	GAGGAG	2 cut(s)	357, 1335
BseSI	GKGCMC	1 cut(s)	1069
BsgI	GTGCAG	2 cut(s)	636, 1694
Bsh1236I	CGCG	1 cut(s)	144
BshNI	GGYRCC	4 cut(s)	146, 152, 236, 1030
BsiHKAI	GWGCWC	1 cut(s)	1893
BsiSI	CCGG	8 cut(s)	150, 222, 234, 240, 282, 465, 853, 1901
BslFI	GGGAC	2 cut(s)	57, 1110
BsmAI	GTCTC	4 cut(s)	1083, 1578, 1644, 1749
BsmBI	CGTCTC	1 cut(s)	1644
BsmFI	GGGAC	2 cut(s)	57, 1110
BsmI	GAATGC	1 cut(s)	1450
Bsp120I	GGGCCC	1 cut(s)	1065
Bsp1286I	GDGCHC	3 cut(s)	644, 1069, 1893
Bsp143I	GATC	7 cut(s)	328, 368, 447, 862, 970, 982, 2239
Bsp19I	CCATGG	1 cut(s)	1117
BspFNI	CGCG	1 cut(s)	144
BspMAI	CTGCAG	2 cut(s)	474, 1807
BspMI	ACCTGC	4 cut(s)	6, 1312, 1935, 1966
BspPI	GGATC	4 cut(s)	376, 857, 965, 2234
BspT107I	GGYRCC	4 cut(s)	146, 152, 236, 1030
BsrBI	CCGCTC	1 cut(s)	277
BsrFI	RCCGGY	2 cut(s)	149, 233
BsrI	ACTGG	4 cut(s)	953, 1189, 1723, 1939
BssAI	RCCGGY	2 cut(s)	149, 233
BssMI	GATC	7 cut(s)	328, 368, 447, 862, 970, 982, 2239
BssNI	GRCGYC	5 cut(s)	54, 90, 147, 153, 215
BssT1I	CCWWGG	4 cut(s)	610, 875, 1079, 1117
Bst2UI	CCWGG	6 cut(s)	558, 882, 915, 942, 1047, 2159
Bst4CI	ACNGT	6 cut(s)	68, 173, 633, 850, 1774, 1861
Bst6I	CTCTTC	3 cut(s)	86, 186, 558
BstACI	GRCGYC	5 cut(s)	54, 90, 147, 153, 215
BstAPI	GCANNNNNTGC	2 cut(s)	1454, 1681
BstC8I	GCNNGC	8 cut(s)	151, 219, 1211, 1354, 1623, 1627, 1647, 2061
BstDSI	CCRYGG	4 cut(s)	142, 160, 313, 1117
BstF5I	GGATG	8 cut(s)	298, 755, 1006, 1034, 1141, 1909, 2101, 2286
BstFNI	CGCG	1 cut(s)	144
BstH2I	RGCGCY	3 cut(s)	150, 156, 817
BstHHI	GCGC	5 cut(s)	149, 155, 445, 816, 2053
BstKTI	GATC	7 cut(s)	331, 371, 450, 865, 973, 985, 2242
BstMAI	GTCTC	4 cut(s)	1083, 1578, 1644, 1749
BstMBI	GATC	7 cut(s)	328, 368, 447, 862, 970, 982, 2239
BstNI	CCWGG	6 cut(s)	558, 882, 915, 942, 1047, 2159
BstPAI	GACNNNNGTC	2 cut(s)	66, 1414
BstSCI	CCNGG	7 cut(s)	556, 880, 913, 940, 1045, 1899, 2157
BstSFI	CTRYAG	3 cut(s)	470, 1128, 1803
BstSLI	GKGCMC	1 cut(s)	1069
BstUI	CGCG	1 cut(s)	144
BstV2I	GAAGAC	1 cut(s)	2139
BstXI	CCANNNNNNTGG	1 cut(s)	2165
Bsu36I	CCTNAGG	1 cut(s)	1431
BsuI	GTATCC	1 cut(s)	1901
BtgI	CCRYGG	4 cut(s)	142, 160, 313, 1117
BtsCI	GGATG	8 cut(s)	298, 755, 1006, 1034, 1141, 1909, 2101, 2286
BtsIMutI	CAGTG	3 cut(s)	387, 644, 1754
BveI	ACCTGC	4 cut(s)	6, 1312, 1935, 1966
Cac8I	GCNNGC	8 cut(s)	151, 219, 1211, 1354, 1623, 1627, 1647, 2061
CaiI	CAGNNNCTG	3 cut(s)	389, 1597, 1702
CfoI	GCGC	5 cut(s)	149, 155, 445, 816, 2053
Cfr10I	RCCGGY	2 cut(s)	149, 233
Cfr42I	CCGCGG	1 cut(s)	145
CseI	GACGC	3 cut(s)	62, 98, 223
Csp6I	GTAC	5 cut(s)	19, 625, 956, 1915, 2155
CspCI	CAANNNNNGTGG	4 cut(s)	1008, 1043, 1810, 1845
CviAII	CATG	5 cut(s)	422, 721, 1093, 1118, 1397
CviQI	GTAC	5 cut(s)	19, 625, 956, 1915, 2155
DinI	GGCGCC	2 cut(s)	148, 154
DpnI	GATC	7 cut(s)	330, 370, 449, 864, 972, 984, 2241
DpnII	GATC	7 cut(s)	328, 368, 447, 862, 970, 982, 2239
DrdI	GACNNNNNNGTC	2 cut(s)	95, 1723
DseDI	GACNNNNNNGTC	2 cut(s)	95, 1723
EaeI	YGGCCR	3 cut(s)	37, 1114, 1354
Eam1104I	CTCTTC	3 cut(s)	86, 186, 558
EarI	CTCTTC	3 cut(s)	86, 186, 558
EciI	GGCGGA	3 cut(s)	165, 261, 1422
Eco130I	CCWWGG	4 cut(s)	610, 875, 1079, 1117
Eco147I	AGGCCT	2 cut(s)	874, 880
Eco24I	GRGCYC	2 cut(s)	644, 1069
Eco47I	GGWCC	9 cut(s)	224, 569, 896, 911, 923, 1097, 1136, 1435, 1763
Eco57I	CTGAAG	4 cut(s)	1550, 1800, 2108, 2246
Eco81I	CCTNAGG	1 cut(s)	1431
EcoO109I	RGGNCCY	4 cut(s)	569, 896, 1065, 1097
EcoRII	CCWGG	6 cut(s)	556, 880, 913, 940, 1045, 2157
EcoT14I	CCWWGG	4 cut(s)	610, 875, 1079, 1117
EcoT22I	ATGCAT	2 cut(s)	1450, 2085
EcoT38I	GRGCYC	2 cut(s)	644, 1069
EgeI	GGCGCC	2 cut(s)	148, 154
EheI	GGCGCC	2 cut(s)	148, 154
ErhI	CCWWGG	4 cut(s)	610, 875, 1079, 1117
Esp3I	CGTCTC	1 cut(s)	1644
FaeI	CATG	5 cut(s)	425, 724, 1096, 1121, 1400
FalI	AAGNNNNNCTT	2 cut(s)	883, 915
FaqI	GGGAC	2 cut(s)	57, 1110
FatI	CATG	5 cut(s)	421, 720, 1092, 1117, 1396
FauI	CCCGC	3 cut(s)	199, 226, 235
FauNDI	CATATG	3 cut(s)	694, 1203, 1254
FbaI	TGATCA	2 cut(s)	447, 982
FblI	GTMKAC	1 cut(s)	27
FokI	GGATG	8 cut(s)	285, 762, 993, 1021, 1128, 1916, 2088, 2293
FriOI	GRGCYC	2 cut(s)	644, 1069
FspBI	CTAG	3 cut(s)	701, 876, 1080
FspI	TGCGCA	1 cut(s)	2052
GlaI	GCGC	5 cut(s)	148, 154, 444, 815, 2052
GsuI	CTGGAG	4 cut(s)	309, 903, 1107, 1272
HaeII	RGCGCY	3 cut(s)	150, 156, 817
HapII	CCGG	8 cut(s)	150, 222, 234, 240, 282, 465, 853, 1901
HgaI	GACGC	3 cut(s)	62, 98, 223
HhaI	GCGC	5 cut(s)	149, 155, 445, 816, 2053
Hin1I	GRCGYC	5 cut(s)	54, 90, 147, 153, 215
Hin1II	CATG	5 cut(s)	425, 724, 1096, 1121, 1400
Hin6I	GCGC	5 cut(s)	147, 153, 443, 814, 2051
HinP1I	GCGC	5 cut(s)	147, 153, 443, 814, 2051
HincII	GTYRAC	2 cut(s)	100, 1331
HindII	GTYRAC	2 cut(s)	100, 1331
HindIII	AAGCTT	3 cut(s)	356, 1374, 1627
HinfI	GANTC	6 cut(s)	201, 400, 742, 756, 887, 1180
HpaII	CCGG	8 cut(s)	150, 222, 234, 240, 282, 465, 853, 1901
HphI	GGTGA	4 cut(s)	681, 980, 1236, 1949
Hpy166II	GTNNAC	6 cut(s)	28, 100, 715, 1019, 1139, 1331
Hpy188III	TCNNGA	6 cut(s)	326, 760, 1086, 2166, 2192, 2273
Hpy8I	GTNNAC	6 cut(s)	28, 100, 715, 1019, 1139, 1331
Hpy99I	CGWCG	5 cut(s)	50, 53, 56, 72, 92
HpyAV	CCTTC	8 cut(s)	264, 909, 1272, 1277, 1542, 1587, 1824, 2037
HpyCH4III	ACNGT	6 cut(s)	68, 173, 633, 850, 1774, 1861
HpyCH4IV	ACGT	2 cut(s)	1528, 2153
HpySE526I	ACGT	2 cut(s)	1528, 2153
Hsp92I	GRCGYC	5 cut(s)	54, 90, 147, 153, 215
Hsp92II	CATG	5 cut(s)	425, 724, 1096, 1121, 1400
HspAI	GCGC	5 cut(s)	147, 153, 443, 814, 2051
KasI	GGCGCC	2 cut(s)	146, 152
KflI	GGGWCCC	1 cut(s)	1097
KroI	GCCGGC	1 cut(s)	149
KroNI	GCCGGC	1 cut(s)	151
Ksp22I	TGATCA	2 cut(s)	447, 982
KspI	CCGCGG	1 cut(s)	145
Kzo9I	GATC	7 cut(s)	328, 368, 447, 862, 970, 982, 2239
LmnI	GCTCC	3 cut(s)	1462, 1543, 1837
LweI	GCATC	8 cut(s)	1015, 1185, 1457, 1584, 1720, 2070, 2072, 2092
MaeI	CTAG	3 cut(s)	701, 876, 1080
MaeII	ACGT	2 cut(s)	1528, 2153
MaeIII	GTNAC	5 cut(s)	1242, 1392, 1846, 1861, 2211
MalI	GATC	7 cut(s)	330, 370, 449, 864, 972, 984, 2241
MbiI	CCGCTC	1 cut(s)	277
MboI	GATC	7 cut(s)	328, 368, 447, 862, 970, 982, 2239
MhlI	GDGCHC	3 cut(s)	644, 1069, 1893
MlsI	TGGCCA	2 cut(s)	39, 1356
MluCI	AATT	7 cut(s)	681, 731, 987, 1011, 1105, 1215, 2169
MluNI	TGGCCA	2 cut(s)	39, 1356
Mly113I	GGCGCC	2 cut(s)	147, 153
MlyI	GAGTC	1 cut(s)	751
MmeI	TCCRAC	5 cut(s)	111, 346, 1016, 1752, 2275
Mox20I	TGGCCA	2 cut(s)	39, 1356
Mph1103I	ATGCAT	2 cut(s)	1450, 2085
MreI	CGCCGGCG	1 cut(s)	149
MroNI	GCCGGC	1 cut(s)	149
MscI	TGGCCA	2 cut(s)	39, 1356
MseI	TTAA	5 cut(s)	492, 1104, 1185, 1368, 1490
Msp20I	TGGCCA	2 cut(s)	39, 1356
MspA1I	CMGCKG	5 cut(s)	144, 230, 1414, 1660, 1802
MspI	CCGG	8 cut(s)	150, 222, 234, 240, 282, 465, 853, 1901
MspR9I	CCNGG	7 cut(s)	558, 882, 915, 942, 1047, 1901, 2159
Mva1269I	GAATGC	1 cut(s)	1450
MvaI	CCWGG	6 cut(s)	558, 882, 915, 942, 1047, 2159
MvnI	CGCG	1 cut(s)	144
NaeI	GCCGGC	1 cut(s)	151
NarI	GGCGCC	2 cut(s)	147, 153
NciI	CCSGG	1 cut(s)	1901
NcoI	CCATGG	1 cut(s)	1117
NdeI	CATATG	3 cut(s)	694, 1203, 1254
NdeII	GATC	7 cut(s)	328, 368, 447, 862, 970, 982, 2239
NgoMIV	GCCGGC	1 cut(s)	149
NlaIII	CATG	5 cut(s)	425, 724, 1096, 1121, 1400
NmeAIII	GCCGAG	1 cut(s)	2092
NmuCI	GTSAC	1 cut(s)	1242
NsbI	TGCGCA	1 cut(s)	2052
NsiI	ATGCAT	2 cut(s)	1450, 2085
PaqCI	CACCTGC	1 cut(s)	1935
PasI	CCCWGGG	1 cut(s)	941
PceI	AGGCCT	2 cut(s)	874, 880
PctI	GAATGC	1 cut(s)	1450
PdiI	GCCGGC	1 cut(s)	151
PfeI	GAWTC	5 cut(s)	201, 400, 756, 887, 1180
PflMI	CCANNNNNTGG	1 cut(s)	920
PleI	GAGTC	1 cut(s)	750
PluTI	GGCGCC	2 cut(s)	150, 156
PpsI	GAGTC	1 cut(s)	750
PpuMI	RGGWCCY	3 cut(s)	569, 896, 1097
PshAI	GACNNNNGTC	2 cut(s)	66, 1414
PsiI	TTATAA	1 cut(s)	1923
Psp5II	RGGWCCY	3 cut(s)	569, 896, 1097
Psp6I	CCWGG	6 cut(s)	556, 880, 913, 940, 1045, 2157
PspGI	CCWGG	6 cut(s)	556, 880, 913, 940, 1045, 2157
PspOMI	GGGCCC	1 cut(s)	1065
PspPPI	RGGWCCY	3 cut(s)	569, 896, 1097
PstI	CTGCAG	2 cut(s)	474, 1807
PstNI	CAGNNNCTG	3 cut(s)	389, 1597, 1702
PvuII	CAGCTG	3 cut(s)	1414, 1660, 1802
RsaI	GTAC	5 cut(s)	20, 626, 957, 1916, 2156
RsaNI	GTAC	5 cut(s)	19, 625, 956, 1915, 2155
SacII	CCGCGG	1 cut(s)	145
SaqAI	TTAA	5 cut(s)	492, 1104, 1185, 1368, 1490
Sau3AI	GATC	7 cut(s)	328, 368, 447, 862, 970, 982, 2239
ScaI	AGTACT	1 cut(s)	1916
SchI	GAGTC	1 cut(s)	751
ScrFI	CCNGG	7 cut(s)	558, 882, 915, 942, 1047, 1901, 2159
SduI	GDGCHC	3 cut(s)	644, 1069, 1893
SfaNI	GCATC	8 cut(s)	1015, 1185, 1457, 1584, 1720, 2070, 2072, 2092
SfcI	CTRYAG	3 cut(s)	470, 1128, 1803
SfoI	GGCGCC	2 cut(s)	148, 154
Sfr303I	CCGCGG	1 cut(s)	145
SgrAI	CRCCGGYG	1 cut(s)	149
SgrBI	CCGCGG	1 cut(s)	145
SinI	GGWCC	9 cut(s)	224, 569, 896, 911, 923, 1097, 1136, 1435, 1763
Sse9I	AATT	7 cut(s)	681, 731, 987, 1011, 1105, 1215, 2169
SseBI	AGGCCT	2 cut(s)	874, 880
SspDI	GGCGCC	2 cut(s)	146, 152
SspMI	CTAG	3 cut(s)	701, 876, 1080
StuI	AGGCCT	2 cut(s)	874, 880
StyD4I	CCNGG	7 cut(s)	556, 880, 913, 940, 1045, 1899, 2157
StyI	CCWWGG	4 cut(s)	610, 875, 1079, 1117
TaaI	ACNGT	6 cut(s)	68, 173, 633, 850, 1774, 1861
TaiI	ACGT	2 cut(s)	1531, 2156
TaqI	TCGA	3 cut(s)	168, 1193, 1502
TasI	AATT	7 cut(s)	681, 731, 987, 1011, 1105, 1215, 2169
TatI	WGTACW	2 cut(s)	624, 1914
TauI	GCSGC	5 cut(s)	126, 147, 158, 277, 1116
TfiI	GAWTC	5 cut(s)	201, 400, 756, 887, 1180
Tru1I	TTAA	5 cut(s)	492, 1104, 1185, 1368, 1490
Tru9I	TTAA	5 cut(s)	492, 1104, 1185, 1368, 1490
TscAI	CASTG	3 cut(s)	394, 651, 1754
TseFI	GTSAC	1 cut(s)	1242
Tsp45I	GTSAC	1 cut(s)	1242
TspDTI	ATGAA	4 cut(s)	744, 1149, 1259, 2090
TspGWI	ACGGA	1 cut(s)	677
TspRI	CASTG	3 cut(s)	394, 651, 1754
Van91I	CCANNNNNTGG	1 cut(s)	920
VpaK11BI	GGWCC	9 cut(s)	224, 569, 896, 911, 923, 1097, 1136, 1435, 1763
XapI	RAATTY	3 cut(s)	681, 987, 1215
XcmI	CCANNNNNNNNNTGG	1 cut(s)	999
XmaJI	CCTAGG	2 cut(s)	875, 1079
XmiI	GTMKAC	1 cut(s)	27
XspI	CTAG	3 cut(s)	701, 876, 1080
ZrmI	AGTACT	1 cut(s)	1916
Zsp2I	ATGCAT	2 cut(s)	1450, 2085

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.