AT4G16515

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012994
Physical Location & Seq
Reverse (-)
9305166 .. 9305845
680 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G16515.2

Sequence Viewer

Length: 261 bp
ATGTCTTGCTCTTTGAGGAGTGGACTCGTGATAGTGTTCTGTTTCATTCTTCTGCTTTTGTCTTCCAATGTTGGATGTGCCTCTGCCGCTCGTCGTTTAAGGTCACATAAGCATCATCATCACAAGGTTGCTTCTTTGGACGTCTTCAATGGTGGAGAAAGGAGGCGGGCGTTGGGTGGAGTCGAGACAGGGGAAGAAGTAGTAGTCATGGATTATCCTCAGCCTCATCGTAAGCCTCCGATCCACAACGAGAAGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.54

Weight (kDa)

9.64

Isoelectric Point (pI)

74.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLV1-2 PF21529 73 - 144 8e-08 Gloven 1/2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012994)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16515 AT4G16515
fragaria_vesca FvH4_5g00070
malus_domestica MD00G1115000.v1.1
prunus_persica Prupe.5G072500_v2.0.a1 Prupe.5G072500_v2.0.a1
pyrus_communis pycom133g00170
rosa_chinensis RchiOBHm_Chr7g0202891
rosa_laevigata RLG00000003566
rosa_multiflora Rmu_sc0033032.1_g000001
rosa_roxburghii Rroxscaffold_3G00254200
rosa_rugosa Rorug07G0073600 Rorug07G0073700
rosa_samantha Rh7AG201400 Rh7BG201800 Rh7CG212900 Rh7DG208400
rosa_wichuraiana Rw7G017620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 144
AccBSI CCGCTC 1 cut(s) 89
AciI CCGC 2 cut(s) 87, 166
AclWI GGATC 1 cut(s) 235
AcyI GRCGYC 1 cut(s) 141
AgsI TTSAA 1 cut(s) 148
Alw26I GTCTC 1 cut(s) 179
AlwI GGATC 1 cut(s) 235
BauI CACGAG 1 cut(s) 26
BbsI GAAGAC 2 cut(s) 54, 136
BbvCI CCTCAGC 1 cut(s) 219
BcoDI GTCTC 1 cut(s) 179
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
BmsI GCATC 1 cut(s) 121
BpiI GAAGAC 2 cut(s) 54, 136
Bpu10I CCTNAGC 1 cut(s) 219
BsaHI GRCGYC 1 cut(s) 141
BseGI GGATG 1 cut(s) 80
BseMII CTCAG 1 cut(s) 233
BseRI GAGGAG 1 cut(s) 31
BsmAI GTCTC 1 cut(s) 179
Bsp143I GATC 1 cut(s) 240
BspACI CCGC 2 cut(s) 87, 166
BspCNI CTCAG 1 cut(s) 232
BspPI GGATC 1 cut(s) 235
BsrBI CCGCTC 1 cut(s) 89
BssMI GATC 1 cut(s) 240
BssNI GRCGYC 1 cut(s) 141
BssSI CACGAG 1 cut(s) 26
Bst2BI CACGAG 1 cut(s) 26
BstACI GRCGYC 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 219
BstF5I GGATG 1 cut(s) 80
BstKTI GATC 1 cut(s) 243
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 1 cut(s) 240
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstV2I GAAGAC 2 cut(s) 54, 136
BtsCI GGATG 1 cut(s) 80
Cac8I GCNNGC 1 cut(s) 168
CviAII CATG 1 cut(s) 208
CviJI RGCY 2 cut(s) 223, 235
CviKI_1 RGCY 2 cut(s) 223, 235
DdeI CTNAG 1 cut(s) 219
DpnI GATC 1 cut(s) 242
DpnII GATC 1 cut(s) 240
FaeI CATG 1 cut(s) 211
FaiI YATR 2 cut(s) 108, 209
FatI CATG 1 cut(s) 207
FauI CCCGC 1 cut(s) 159
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 87
GluI GCNGC 1 cut(s) 87
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 1 cut(s) 211
HinfI GANTC 2 cut(s) 24, 180
Hpy166II GTNNAC 1 cut(s) 23
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 2 cut(s) 28, 184
Hpy8I GTNNAC 1 cut(s) 23
Hpy99I CGWCG 1 cut(s) 96
HpyCH4IV ACGT 1 cut(s) 141
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 1 cut(s) 219
HpySE526I ACGT 1 cut(s) 141
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 1 cut(s) 211
Kzo9I GATC 1 cut(s) 240
LpnPI CCDG 1 cut(s) 174
LweI GCATC 1 cut(s) 121
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 1 cut(s) 102
MalI GATC 1 cut(s) 242
MbiI CCGCTC 1 cut(s) 89
MboI GATC 1 cut(s) 240
MboII GAAGA 4 cut(s) 41, 54, 136, 206
MlyI GAGTC 2 cut(s) 18, 189
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 6 cut(s) 9, 91, 156, 228, 234, 246
MseI TTAA 2 cut(s) 98, 259
MwoI GCNNNNNNNGC 1 cut(s) 86
NdeII GATC 1 cut(s) 240
NlaIII CATG 1 cut(s) 211
NmuCI GTSAC 1 cut(s) 102
PkrI GCNGC 1 cut(s) 88
PleI GAGTC 2 cut(s) 18, 188
PpsI GAGTC 2 cut(s) 18, 188
SaqAI TTAA 2 cut(s) 98, 259
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 1 cut(s) 240
SchI GAGTC 2 cut(s) 18, 189
SetI ASST 3 cut(s) 104, 129, 144
SfaNI GCATC 1 cut(s) 121
SgeI CNNG 9 cut(s) 18, 38, 40, 102, 136, 179, 196, 201, 220
SsiI CCGC 2 cut(s) 87, 166
TaiI ACGT 1 cut(s) 144
TaqI TCGA 1 cut(s) 183
TauI GCSGC 1 cut(s) 89
Tru1I TTAA 2 cut(s) 98, 259
Tru9I TTAA 2 cut(s) 98, 259
TseFI GTSAC 1 cut(s) 102
Tsp45I GTSAC 1 cut(s) 102
TspDTI ATGAA 1 cut(s) 34
ZraI GACGTC 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.