RLG00000003566

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0012994
Physical Location & Seq
Forward (+)
50089315 .. 50090542
1228 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003566

Sequence Viewer

Length: 495 bp
ATGTATGCATGCAATGCCGGCCGAGTTCTAGGCTTCTCTGTTAAGGAAAGTGGCAGTCAAATCCACGATTCTGTTAATGAGGGTGTAGAGAAAGTATTGACCAAACTTTCGGAGACCACGTCAATGCCATCATCAACTCGGAGGCCTTCCATGTCAGTAGAAGTGAAAAACCCTGAAACAGTAGTCACCCACGAGAAGGCTGATTTTTCGAGGAAACAAGGAGAATCTGCCACTAAACCAACTTCATCAGAACATGATATTATTACATTATCTACTTCTTCTCAGATTGACCTGCAATATCAAGTTGAACTGAAGGGATTGAAGAGGCAGGCACGATCGGTACTGGGATCTGCAATACAAGACAATGATATTGAGGAGGGTCATAATACAGATTCTGAGGGAAGTTCAAATGAAGCAGCTATCGATGAGGATGTCGGTGTCATGGACTATGCAAACCCTCACAGGAAACCACCCATTCACAATCAAAAGCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

17.9

Weight (kDa)

5.35

Isoelectric Point (pI)

59.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLV1-2 PF21529 110 - 161 2.4e-06 Gloven 1/2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012994)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16515 AT4G16515
fragaria_vesca FvH4_5g00070
malus_domestica MD00G1115000.v1.1
prunus_persica Prupe.5G072500_v2.0.a1 Prupe.5G072500_v2.0.a1
pyrus_communis pycom133g00170
rosa_chinensis RchiOBHm_Chr7g0202891
rosa_laevigata RLG00000003566
rosa_multiflora Rmu_sc0033032.1_g000001
rosa_roxburghii Rroxscaffold_3G00254200
rosa_rugosa Rorug07G0073600 Rorug07G0073700
rosa_samantha Rh7AG201400 Rh7BG201800 Rh7CG212900 Rh7DG208400
rosa_wichuraiana Rw7G017620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 300
AclWI GGATC 1 cut(s) 355
AcoI YGGCCR 1 cut(s) 19
AcuI CTGAAG 1 cut(s) 332
AfaI GTAC 1 cut(s) 342
AfiI CCNNNNNNNGG 1 cut(s) 196
AgsI TTSAA 3 cut(s) 308, 322, 408
AjiI CACGTC 1 cut(s) 120
AluBI AGCT 1 cut(s) 419
AluI AGCT 1 cut(s) 419
Alw26I GTCTC 1 cut(s) 107
AlwI GGATC 1 cut(s) 355
AlwNI CAGNNNCTG 1 cut(s) 395
AoxI GGCC 2 cut(s) 19, 143
ApeKI GCWGC 1 cut(s) 416
ArsI GACNNNNNNTTYG 2 cut(s) 91, 123
AsuHPI GGTGA 1 cut(s) 178
BauI CACGAG 1 cut(s) 191
BbvI GCAGC 1 cut(s) 428
BccI CCATC 1 cut(s) 136
BcoDI GTCTC 1 cut(s) 107
BfaI CTAG 2 cut(s) 29, 493
BfuAI ACCTGC 1 cut(s) 300
BisI GCNGC 1 cut(s) 417
BlsI GCNGC 1 cut(s) 418
BmgBI CACGTC 1 cut(s) 120
BmrI ACTGGG 1 cut(s) 353
BmuI ACTGGG 1 cut(s) 353
Bsa29I ATCGAT 1 cut(s) 423
BsaI GGTCTC 1 cut(s) 107
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse118I RCCGGY 1 cut(s) 17
Bse1I ACTGG 1 cut(s) 348
Bse3DI GCAATG 1 cut(s) 19
BseCI ATCGAT 1 cut(s) 423
BseGI GGATG 1 cut(s) 436
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMI GCAATG 1 cut(s) 19
BseMII CTCAG 2 cut(s) 296, 387
BseNI ACTGG 1 cut(s) 348
BseRI GAGGAG 1 cut(s) 389
BseX3I CGGCCG 1 cut(s) 19
BseXI GCAGC 1 cut(s) 428
Bsh1285I CGRYCG 2 cut(s) 22, 338
BshFI GGCC 2 cut(s) 21, 145
BshVI ATCGAT 1 cut(s) 423
BsiEI CGRYCG 2 cut(s) 22, 338
BsiSI CCGG 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 1 cut(s) 107
BsnI GGCC 2 cut(s) 21, 145
Bso31I GGTCTC 1 cut(s) 107
Bsp143I GATC 2 cut(s) 335, 347
BspANI GGCC 2 cut(s) 21, 145
BspCNI CTCAG 2 cut(s) 295, 388
BspDI ATCGAT 1 cut(s) 423
BspMI ACCTGC 1 cut(s) 300
BspPI GGATC 1 cut(s) 355
BspTNI GGTCTC 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 19
BsrFI RCCGGY 1 cut(s) 17
BsrI ACTGG 1 cut(s) 348
BssAI RCCGGY 1 cut(s) 17
BssMI GATC 2 cut(s) 335, 347
BssSI CACGAG 1 cut(s) 191
Bst2BI CACGAG 1 cut(s) 191
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 317
BstAPI GCANNNNNTGC 1 cut(s) 14
BstC8I GCNNGC 3 cut(s) 10, 19, 330
BstDEI CTNAG 2 cut(s) 282, 396
BstF5I GGATG 1 cut(s) 436
BstKTI GATC 2 cut(s) 338, 350
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 2 cut(s) 335, 347
BstMCI CGRYCG 2 cut(s) 22, 338
BstMWI GCNNNNNNNGC 2 cut(s) 14, 18
BstNSI RCATGY 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 428
BstX2I RGATCY 1 cut(s) 347
BstYI RGATCY 1 cut(s) 347
BstZI CGGCCG 1 cut(s) 19
Bsu15I ATCGAT 1 cut(s) 423
BsuRI GGCC 2 cut(s) 21, 145
BsuTUI ATCGAT 1 cut(s) 423
BtrI CACGTC 1 cut(s) 120
BtsCI GGATG 1 cut(s) 436
BveI ACCTGC 1 cut(s) 300
Cac8I GCNNGC 3 cut(s) 10, 19, 330
CaiI CAGNNNCTG 1 cut(s) 395
Cfr10I RCCGGY 1 cut(s) 17
ClaI ATCGAT 1 cut(s) 423
Csp6I GTAC 1 cut(s) 341
CviAII CATG 4 cut(s) 9, 151, 254, 442
CviJI RGCY 6 cut(s) 21, 33, 145, 200, 419, 490
CviKI_1 RGCY 6 cut(s) 21, 33, 145, 200, 419, 490
CviQI GTAC 1 cut(s) 341
DdeI CTNAG 2 cut(s) 282, 396
DpnI GATC 2 cut(s) 337, 349
DpnII GATC 2 cut(s) 335, 347
EaeI YGGCCR 1 cut(s) 19
EagI CGGCCG 1 cut(s) 19
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
EclXI CGGCCG 1 cut(s) 19
Eco147I AGGCCT 1 cut(s) 145
Eco31I GGTCTC 1 cut(s) 107
Eco52I CGGCCG 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 332
EcoT22I ATGCAT 1 cut(s) 10
FaeI CATG 4 cut(s) 12, 154, 257, 445
FaiI YATR 7 cut(s) 6, 10, 152, 255, 384, 443, 450
FatI CATG 4 cut(s) 8, 150, 253, 441
Fnu4HI GCNGC 1 cut(s) 417
FokI GGATG 1 cut(s) 443
Fsp4HI GCNGC 1 cut(s) 417
FspBI CTAG 2 cut(s) 29, 493
GluI GCNGC 1 cut(s) 417
HaeIII GGCC 2 cut(s) 21, 145
HapII CCGG 1 cut(s) 18
Hin1II CATG 4 cut(s) 12, 154, 257, 445
HinfI GANTC 3 cut(s) 68, 224, 392
HpaII CCGG 1 cut(s) 18
HphI GGTGA 1 cut(s) 178
Hpy188I TCNGA 5 cut(s) 112, 141, 250, 285, 397
HpyAV CCTTC 3 cut(s) 156, 190, 307
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 119
HpyCH4V TGCA 5 cut(s) 8, 12, 295, 353, 452
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 18
HpyF3I CTNAG 2 cut(s) 282, 396
HpySE526I ACGT 1 cut(s) 119
Hsp92II CATG 4 cut(s) 12, 154, 257, 445
KroI GCCGGC 1 cut(s) 17
KroNI GCCGGC 1 cut(s) 19
Kzo9I GATC 2 cut(s) 335, 347
LpnPI CCDG 6 cut(s) 31, 186, 305, 314, 329, 448
Lsp1109I GCAGC 1 cut(s) 428
MaeI CTAG 2 cut(s) 29, 493
MaeII ACGT 1 cut(s) 119
MaeIII GTNAC 1 cut(s) 184
MalI GATC 2 cut(s) 337, 349
MboI GATC 2 cut(s) 335, 347
MboII GAAGA 2 cut(s) 270, 334
MflI RGATCY 1 cut(s) 347
MnlI CCTC 9 cut(s) 73, 135, 204, 318, 367, 370, 391, 421, 468
Mph1103I ATGCAT 1 cut(s) 10
MroNI GCCGGC 1 cut(s) 17
MseI TTAA 2 cut(s) 42, 75
MslI CAYNNNNRTG 1 cut(s) 122
MspI CCGG 1 cut(s) 18
MwoI GCNNNNNNNGC 2 cut(s) 14, 18
NaeI GCCGGC 1 cut(s) 19
NdeII GATC 2 cut(s) 335, 347
NgoMIV GCCGGC 1 cut(s) 17
NlaIII CATG 4 cut(s) 12, 154, 257, 445
NmeAIII GCCGAG 1 cut(s) 47
NmuCI GTSAC 1 cut(s) 184
NsiI ATGCAT 1 cut(s) 10
NspI RCATGY 1 cut(s) 12
PaeI GCATGC 1 cut(s) 12
PceI AGGCCT 1 cut(s) 145
PcsI WCGNNNNNNNCGW 1 cut(s) 116
PdiI GCCGGC 1 cut(s) 19
PfeI GAWTC 3 cut(s) 68, 224, 392
PflFI GACNNNGTC 1 cut(s) 118
PkrI GCNGC 1 cut(s) 418
Ple19I CGATCG 1 cut(s) 338
PstNI CAGNNNCTG 1 cut(s) 395
PsuI RGATCY 1 cut(s) 347
PsyI GACNNNGTC 1 cut(s) 118
PvuI CGATCG 1 cut(s) 338
RsaI GTAC 1 cut(s) 342
RsaNI GTAC 1 cut(s) 341
RseI CAYNNNNRTG 1 cut(s) 122
SaqAI TTAA 2 cut(s) 42, 75
SatI GCNGC 1 cut(s) 417
Sau3AI GATC 2 cut(s) 335, 347
SetI ASST 3 cut(s) 122, 294, 421
SmiMI CAYNNNNRTG 1 cut(s) 122
SphI GCATGC 1 cut(s) 12
SseBI AGGCCT 1 cut(s) 145
SspMI CTAG 2 cut(s) 29, 493
StuI AGGCCT 1 cut(s) 145
TaaI ACNGT 1 cut(s) 181
TaiI ACGT 1 cut(s) 122
TaqI TCGA 2 cut(s) 209, 423
TfiI GAWTC 3 cut(s) 68, 224, 392
Tru1I TTAA 2 cut(s) 42, 75
Tru9I TTAA 2 cut(s) 42, 75
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 1 cut(s) 416
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 2 cut(s) 234, 426
Tth111I GACNNNGTC 1 cut(s) 118
XceI RCATGY 1 cut(s) 12
XspI CTAG 2 cut(s) 29, 493
Zsp2I ATGCAT 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.