Rh7DG208400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0012994
Physical Location & Seq
Reverse (-)
19892902 .. 19895136
2235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG208400.1

Sequence Viewer

Length: 414 bp
ATGTCTTCCAAAATCGTTGTTCTCCTTGTTCTGGTATCATGTCTCTATATGCATATGTATGCATGCAATGCCGGCCGAGTTCTAGGCTTCTCTGTTAAGGAAAGTGGCAGTCAAATCCACGATTCTGTTAATGAGGGTGTAGAGAAAGTTTGGATCCAACTTTCGGAGACCACGTCAATGCCATCATCAACTTGGAGGCCTTCCATGTTAGTAGAAGTGAAAAACCCTGAAACAGTAGTCACCCACGAGAAGGCTGATTTTTCGAGGAAACAAGGAGAATCTGCCACTAGACCAACTTCATCAGGACATGATATTATTACATTATCTACTTCTTCTCAGATTGACCTGCAATATCAAGTTGAACTGAAGGTACATAATCTACTCAATCATTATTCCATTAAGAAGTATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.38

Weight (kDa)

7.01

Isoelectric Point (pI)

57.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012994)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16515 AT4G16515
fragaria_vesca FvH4_5g00070
malus_domestica MD00G1115000.v1.1
prunus_persica Prupe.5G072500_v2.0.a1 Prupe.5G072500_v2.0.a1
pyrus_communis pycom133g00170
rosa_chinensis RchiOBHm_Chr7g0202891
rosa_laevigata RLG00000003566
rosa_multiflora Rmu_sc0033032.1_g000001
rosa_roxburghii Rroxscaffold_3G00254200
rosa_rugosa Rorug07G0073600 Rorug07G0073700
rosa_samantha Rh7AG201400 Rh7BG201800 Rh7CG212900 Rh7DG208400
rosa_wichuraiana Rw7G017620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 354
AclWI GGATC 2 cut(s) 148, 161
AcoI YGGCCR 1 cut(s) 73
AcuI CTGAAG 1 cut(s) 386
AfaI GTAC 1 cut(s) 372
AfiI CCNNNNNNNGG 3 cut(s) 31, 163, 250
AgsI TTSAA 1 cut(s) 362
AjiI CACGTC 1 cut(s) 174
Alw26I GTCTC 2 cut(s) 47, 161
AlwI GGATC 2 cut(s) 148, 161
AoxI GGCC 2 cut(s) 73, 197
AsuHPI GGTGA 1 cut(s) 232
BamHI GGATCC 1 cut(s) 153
BauI CACGAG 1 cut(s) 245
BccI CCATC 1 cut(s) 190
BcoDI GTCTC 2 cut(s) 47, 161
BfaI CTAG 2 cut(s) 83, 288
BfuAI ACCTGC 1 cut(s) 354
BmgBI CACGTC 1 cut(s) 174
BmiI GGNNCC 1 cut(s) 155
BsaI GGTCTC 1 cut(s) 161
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 163, 250
Bse118I RCCGGY 1 cut(s) 71
Bse3DI GCAATG 1 cut(s) 73
BseLI CCNNNNNNNGG 3 cut(s) 31, 163, 250
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 1 cut(s) 350
BseX3I CGGCCG 1 cut(s) 73
Bsh1285I CGRYCG 1 cut(s) 76
BshFI GGCC 2 cut(s) 75, 199
BsiEI CGRYCG 1 cut(s) 76
BsiSI CCGG 1 cut(s) 72
BslI CCNNNNNNNGG 3 cut(s) 31, 163, 250
BsmAI GTCTC 2 cut(s) 47, 161
BsnI GGCC 2 cut(s) 75, 199
Bso31I GGTCTC 1 cut(s) 161
Bsp143I GATC 1 cut(s) 153
BspANI GGCC 2 cut(s) 75, 199
BspCNI CTCAG 1 cut(s) 349
BspLI GGNNCC 1 cut(s) 155
BspMI ACCTGC 1 cut(s) 354
BspPI GGATC 2 cut(s) 148, 161
BspTNI GGTCTC 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 73
BsrFI RCCGGY 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 71
BssMI GATC 1 cut(s) 153
BssSI CACGAG 1 cut(s) 245
Bst2BI CACGAG 1 cut(s) 245
Bst4CI ACNGT 1 cut(s) 235
BstAPI GCANNNNNTGC 1 cut(s) 68
BstC8I GCNNGC 2 cut(s) 64, 73
BstDEI CTNAG 1 cut(s) 336
BstKTI GATC 1 cut(s) 156
BstMAI GTCTC 2 cut(s) 47, 161
BstMBI GATC 1 cut(s) 153
BstMCI CGRYCG 1 cut(s) 76
BstMWI GCNNNNNNNGC 2 cut(s) 68, 72
BstNSI RCATGY 1 cut(s) 66
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
BstZI CGGCCG 1 cut(s) 73
BsuRI GGCC 2 cut(s) 75, 199
BtrI CACGTC 1 cut(s) 174
BveI ACCTGC 1 cut(s) 354
Cac8I GCNNGC 2 cut(s) 64, 73
Cfr10I RCCGGY 1 cut(s) 71
Csp6I GTAC 1 cut(s) 371
CviAII CATG 4 cut(s) 39, 63, 205, 308
CviJI RGCY 4 cut(s) 75, 87, 199, 254
CviKI_1 RGCY 4 cut(s) 75, 87, 199, 254
CviQI GTAC 1 cut(s) 371
DdeI CTNAG 1 cut(s) 336
DpnI GATC 1 cut(s) 155
DpnII GATC 1 cut(s) 153
EaeI YGGCCR 1 cut(s) 73
EagI CGGCCG 1 cut(s) 73
EclXI CGGCCG 1 cut(s) 73
Eco147I AGGCCT 1 cut(s) 199
Eco31I GGTCTC 1 cut(s) 161
Eco52I CGGCCG 1 cut(s) 73
Eco57I CTGAAG 1 cut(s) 386
EcoT22I ATGCAT 2 cut(s) 54, 64
FaeI CATG 4 cut(s) 42, 66, 208, 311
FatI CATG 4 cut(s) 38, 62, 204, 307
FauNDI CATATG 1 cut(s) 54
FspBI CTAG 2 cut(s) 83, 288
HaeIII GGCC 2 cut(s) 75, 199
HapII CCGG 1 cut(s) 72
Hin1II CATG 4 cut(s) 42, 66, 208, 311
HinfI GANTC 2 cut(s) 122, 278
HpaII CCGG 1 cut(s) 72
HphI GGTGA 1 cut(s) 232
Hpy188I TCNGA 2 cut(s) 166, 339
Hpy188III TCNNGA 1 cut(s) 303
HpyAV CCTTC 3 cut(s) 210, 244, 361
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4IV ACGT 1 cut(s) 173
HpyCH4V TGCA 4 cut(s) 52, 62, 66, 349
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 72
HpyF3I CTNAG 1 cut(s) 336
HpySE526I ACGT 1 cut(s) 173
Hsp92II CATG 4 cut(s) 42, 66, 208, 311
KroI GCCGGC 1 cut(s) 71
KroNI GCCGGC 1 cut(s) 73
Kzo9I GATC 1 cut(s) 153
LpnPI CCDG 5 cut(s) 17, 85, 240, 288, 359
MaeI CTAG 2 cut(s) 83, 288
MaeII ACGT 1 cut(s) 173
MaeIII GTNAC 1 cut(s) 238
MalI GATC 1 cut(s) 155
MboI GATC 1 cut(s) 153
MboII GAAGA 1 cut(s) 324
MflI RGATCY 1 cut(s) 153
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 3 cut(s) 127, 189, 258
Mph1103I ATGCAT 2 cut(s) 54, 64
MroNI GCCGGC 1 cut(s) 71
MseI TTAA 3 cut(s) 96, 129, 399
MslI CAYNNNNRTG 2 cut(s) 57, 176
MspI CCGG 1 cut(s) 72
MwoI GCNNNNNNNGC 2 cut(s) 68, 72
NaeI GCCGGC 1 cut(s) 73
NdeI CATATG 1 cut(s) 54
NdeII GATC 1 cut(s) 153
NgoMIV GCCGGC 1 cut(s) 71
NlaIII CATG 4 cut(s) 42, 66, 208, 311
NlaIV GGNNCC 1 cut(s) 155
NmeAIII GCCGAG 1 cut(s) 101
NmuCI GTSAC 1 cut(s) 238
NsiI ATGCAT 2 cut(s) 54, 64
NspI RCATGY 1 cut(s) 66
PaeI GCATGC 1 cut(s) 66
PceI AGGCCT 1 cut(s) 199
PcsI WCGNNNNNNNCGW 1 cut(s) 170
PdiI GCCGGC 1 cut(s) 73
PfeI GAWTC 2 cut(s) 122, 278
PflFI GACNNNGTC 1 cut(s) 172
PspN4I GGNNCC 1 cut(s) 155
PsrI GAACNNNNNNTAC 2 cut(s) 354, 386
PsuI RGATCY 1 cut(s) 153
PsyI GACNNNGTC 1 cut(s) 172
RsaI GTAC 1 cut(s) 372
RsaNI GTAC 1 cut(s) 371
RseI CAYNNNNRTG 2 cut(s) 57, 176
SaqAI TTAA 3 cut(s) 96, 129, 399
Sau3AI GATC 1 cut(s) 153
SetI ASST 3 cut(s) 176, 348, 372
SmiMI CAYNNNNRTG 2 cut(s) 57, 176
SphI GCATGC 1 cut(s) 66
SseBI AGGCCT 1 cut(s) 199
SspMI CTAG 2 cut(s) 83, 288
StuI AGGCCT 1 cut(s) 199
TaaI ACNGT 1 cut(s) 235
TaiI ACGT 1 cut(s) 176
TaqI TCGA 1 cut(s) 263
TfiI GAWTC 2 cut(s) 122, 278
Tru1I TTAA 3 cut(s) 96, 129, 399
Tru9I TTAA 3 cut(s) 96, 129, 399
TseFI GTSAC 1 cut(s) 238
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 1 cut(s) 288
Tth111I GACNNNGTC 1 cut(s) 172
XceI RCATGY 1 cut(s) 66
XcmI CCANNNNNNNNNTGG 1 cut(s) 189
XspI CTAG 2 cut(s) 83, 288
Zsp2I ATGCAT 2 cut(s) 54, 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.