Rw7G017620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0012994
Physical Location & Seq
Reverse (-)
18614513 .. 18616349
1837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G017620.1

Sequence Viewer

Length: 546 bp
ATGTCTTCCAAAATCGTTGTTCTCCTTGTTCTGGTATCATGTCTCTATATGCATATGTATGCATGCAATGCCGGCCGAGTTCTAGGCTTCTCTGTTAAGGAAAGTGGCAGTCAAATCCACGATTCTGTTAATGAGGGTGTAGAGAAAGTATGGATCCAACTTTCGGAGACCACGTCAATGCCATCATCAACTCGGAGGCCTTCCATGTCAGTAGAAGTGAAAAACCCTGAAACAGTAGTCACCCACGAGAAGGCTGATTTTTCGAGGAAACAAGGAGAATCTGCCACTAAACCAACTTCATCAGGACATGATATTATTACATTATCTACTTCTCAGATTGACCTGCAATATCAAGTTGAACTGAAGGGATTGAAGAGGCAGGCACGATCGGTACTGGGATCTGCAATACAAGACAATGATATTGAGGAGGATCATAATACAGATTCTGAGGGAAGTTCAAATGAAGCAGCTATCGATGAGGATGTCGGTGTCATGGACTATGCAAACCCTCACAGGAAACCACCCATTCACAATCAAAAGCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

19.9

Weight (kDa)

5.46

Isoelectric Point (pI)

65.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLV1-2 PF21529 127 - 178 1.8e-06 Gloven 1/2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012994)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16515 AT4G16515
fragaria_vesca FvH4_5g00070
malus_domestica MD00G1115000.v1.1
prunus_persica Prupe.5G072500_v2.0.a1 Prupe.5G072500_v2.0.a1
pyrus_communis pycom133g00170
rosa_chinensis RchiOBHm_Chr7g0202891
rosa_laevigata RLG00000003566
rosa_multiflora Rmu_sc0033032.1_g000001
rosa_roxburghii Rroxscaffold_3G00254200
rosa_rugosa Rorug07G0073600 Rorug07G0073700
rosa_samantha Rh7AG201400 Rh7BG201800 Rh7CG212900 Rh7DG208400
rosa_wichuraiana Rw7G017620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 351
AclWI GGATC 4 cut(s) 148, 161, 406, 438
AcoI YGGCCR 1 cut(s) 73
AcuI CTGAAG 1 cut(s) 383
AfaI GTAC 1 cut(s) 393
AfiI CCNNNNNNNGG 3 cut(s) 31, 163, 250
AgsI TTSAA 3 cut(s) 359, 373, 459
AjiI CACGTC 1 cut(s) 174
AluBI AGCT 1 cut(s) 470
AluI AGCT 1 cut(s) 470
Alw26I GTCTC 2 cut(s) 47, 161
AlwI GGATC 4 cut(s) 148, 161, 406, 438
AlwNI CAGNNNCTG 1 cut(s) 446
AoxI GGCC 2 cut(s) 73, 197
ApeKI GCWGC 1 cut(s) 467
AsuHPI GGTGA 1 cut(s) 232
BamHI GGATCC 1 cut(s) 153
BauI CACGAG 1 cut(s) 245
BbvI GCAGC 1 cut(s) 479
BccI CCATC 1 cut(s) 190
BcoDI GTCTC 2 cut(s) 47, 161
BfaI CTAG 2 cut(s) 83, 544
BfuAI ACCTGC 1 cut(s) 351
BisI GCNGC 1 cut(s) 468
BlsI GCNGC 1 cut(s) 469
BmgBI CACGTC 1 cut(s) 174
BmiI GGNNCC 1 cut(s) 155
BmrI ACTGGG 1 cut(s) 404
BmuI ACTGGG 1 cut(s) 404
Bsa29I ATCGAT 1 cut(s) 474
BsaI GGTCTC 1 cut(s) 161
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 163, 250
Bse118I RCCGGY 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 399
Bse3DI GCAATG 1 cut(s) 73
BseCI ATCGAT 1 cut(s) 474
BseGI GGATG 1 cut(s) 487
BseLI CCNNNNNNNGG 3 cut(s) 31, 163, 250
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 2 cut(s) 347, 438
BseNI ACTGG 1 cut(s) 399
BseRI GAGGAG 1 cut(s) 440
BseX3I CGGCCG 1 cut(s) 73
BseXI GCAGC 1 cut(s) 479
Bsh1285I CGRYCG 2 cut(s) 76, 389
BshFI GGCC 2 cut(s) 75, 199
BshVI ATCGAT 1 cut(s) 474
BsiEI CGRYCG 2 cut(s) 76, 389
BsiSI CCGG 1 cut(s) 72
BslI CCNNNNNNNGG 3 cut(s) 31, 163, 250
BsmAI GTCTC 2 cut(s) 47, 161
BsnI GGCC 2 cut(s) 75, 199
Bso31I GGTCTC 1 cut(s) 161
Bsp143I GATC 4 cut(s) 153, 386, 398, 430
BspANI GGCC 2 cut(s) 75, 199
BspCNI CTCAG 2 cut(s) 346, 439
BspDI ATCGAT 1 cut(s) 474
BspLI GGNNCC 1 cut(s) 155
BspMI ACCTGC 1 cut(s) 351
BspPI GGATC 4 cut(s) 148, 161, 406, 438
BspTNI GGTCTC 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 73
BsrFI RCCGGY 1 cut(s) 71
BsrI ACTGG 1 cut(s) 399
BssAI RCCGGY 1 cut(s) 71
BssMI GATC 4 cut(s) 153, 386, 398, 430
BssSI CACGAG 1 cut(s) 245
Bst2BI CACGAG 1 cut(s) 245
Bst4CI ACNGT 1 cut(s) 235
Bst6I CTCTTC 1 cut(s) 368
BstAPI GCANNNNNTGC 1 cut(s) 68
BstC8I GCNNGC 3 cut(s) 64, 73, 381
BstDEI CTNAG 2 cut(s) 333, 447
BstF5I GGATG 1 cut(s) 487
BstKTI GATC 4 cut(s) 156, 389, 401, 433
BstMAI GTCTC 2 cut(s) 47, 161
BstMBI GATC 4 cut(s) 153, 386, 398, 430
BstMCI CGRYCG 2 cut(s) 76, 389
BstMWI GCNNNNNNNGC 2 cut(s) 68, 72
BstNSI RCATGY 1 cut(s) 66
BstV1I GCAGC 1 cut(s) 479
BstX2I RGATCY 2 cut(s) 153, 398
BstYI RGATCY 2 cut(s) 153, 398
BstZI CGGCCG 1 cut(s) 73
Bsu15I ATCGAT 1 cut(s) 474
BsuRI GGCC 2 cut(s) 75, 199
BsuTUI ATCGAT 1 cut(s) 474
BtrI CACGTC 1 cut(s) 174
BtsCI GGATG 1 cut(s) 487
BveI ACCTGC 1 cut(s) 351
Cac8I GCNNGC 3 cut(s) 64, 73, 381
CaiI CAGNNNCTG 1 cut(s) 446
Cfr10I RCCGGY 1 cut(s) 71
ClaI ATCGAT 1 cut(s) 474
Csp6I GTAC 1 cut(s) 392
CviAII CATG 5 cut(s) 39, 63, 205, 308, 493
CviJI RGCY 6 cut(s) 75, 87, 199, 254, 470, 541
CviKI_1 RGCY 6 cut(s) 75, 87, 199, 254, 470, 541
CviQI GTAC 1 cut(s) 392
DdeI CTNAG 2 cut(s) 333, 447
DpnI GATC 4 cut(s) 155, 388, 400, 432
DpnII GATC 4 cut(s) 153, 386, 398, 430
EaeI YGGCCR 1 cut(s) 73
EagI CGGCCG 1 cut(s) 73
Eam1104I CTCTTC 1 cut(s) 368
EarI CTCTTC 1 cut(s) 368
EclXI CGGCCG 1 cut(s) 73
Eco147I AGGCCT 1 cut(s) 199
Eco31I GGTCTC 1 cut(s) 161
Eco52I CGGCCG 1 cut(s) 73
Eco57I CTGAAG 1 cut(s) 383
EcoT22I ATGCAT 2 cut(s) 54, 64
FaeI CATG 5 cut(s) 42, 66, 208, 311, 496
FatI CATG 5 cut(s) 38, 62, 204, 307, 492
FauNDI CATATG 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 468
FokI GGATG 1 cut(s) 494
Fsp4HI GCNGC 1 cut(s) 468
FspBI CTAG 2 cut(s) 83, 544
GluI GCNGC 1 cut(s) 468
HaeIII GGCC 2 cut(s) 75, 199
HapII CCGG 1 cut(s) 72
Hin1II CATG 5 cut(s) 42, 66, 208, 311, 496
HinfI GANTC 3 cut(s) 122, 278, 443
HpaII CCGG 1 cut(s) 72
HphI GGTGA 1 cut(s) 232
Hpy188I TCNGA 4 cut(s) 166, 195, 336, 448
Hpy188III TCNNGA 1 cut(s) 303
HpyAV CCTTC 3 cut(s) 210, 244, 358
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4IV ACGT 1 cut(s) 173
HpyCH4V TGCA 6 cut(s) 52, 62, 66, 346, 404, 503
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 72
HpyF3I CTNAG 2 cut(s) 333, 447
HpySE526I ACGT 1 cut(s) 173
Hsp92II CATG 5 cut(s) 42, 66, 208, 311, 496
KroI GCCGGC 1 cut(s) 71
KroNI GCCGGC 1 cut(s) 73
Kzo9I GATC 4 cut(s) 153, 386, 398, 430
LpnPI CCDG 8 cut(s) 17, 85, 240, 288, 356, 365, 380, 499
Lsp1109I GCAGC 1 cut(s) 479
MaeI CTAG 2 cut(s) 83, 544
MaeII ACGT 1 cut(s) 173
MaeIII GTNAC 1 cut(s) 238
MalI GATC 4 cut(s) 155, 388, 400, 432
MboI GATC 4 cut(s) 153, 386, 398, 430
MboII GAAGA 1 cut(s) 385
MflI RGATCY 2 cut(s) 153, 398
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 9 cut(s) 127, 189, 258, 369, 418, 421, 442, 472, 519
Mph1103I ATGCAT 2 cut(s) 54, 64
MroNI GCCGGC 1 cut(s) 71
MseI TTAA 2 cut(s) 96, 129
MslI CAYNNNNRTG 2 cut(s) 57, 176
MspI CCGG 1 cut(s) 72
MwoI GCNNNNNNNGC 2 cut(s) 68, 72
NaeI GCCGGC 1 cut(s) 73
NdeI CATATG 1 cut(s) 54
NdeII GATC 4 cut(s) 153, 386, 398, 430
NgoMIV GCCGGC 1 cut(s) 71
NlaIII CATG 5 cut(s) 42, 66, 208, 311, 496
NlaIV GGNNCC 1 cut(s) 155
NmeAIII GCCGAG 1 cut(s) 101
NmuCI GTSAC 1 cut(s) 238
NsiI ATGCAT 2 cut(s) 54, 64
NspI RCATGY 1 cut(s) 66
PaeI GCATGC 1 cut(s) 66
PceI AGGCCT 1 cut(s) 199
PcsI WCGNNNNNNNCGW 1 cut(s) 170
PdiI GCCGGC 1 cut(s) 73
PfeI GAWTC 3 cut(s) 122, 278, 443
PflFI GACNNNGTC 1 cut(s) 172
PkrI GCNGC 1 cut(s) 469
Ple19I CGATCG 1 cut(s) 389
PspN4I GGNNCC 1 cut(s) 155
PstNI CAGNNNCTG 1 cut(s) 446
PsuI RGATCY 2 cut(s) 153, 398
PsyI GACNNNGTC 1 cut(s) 172
PvuI CGATCG 1 cut(s) 389
RsaI GTAC 1 cut(s) 393
RsaNI GTAC 1 cut(s) 392
RseI CAYNNNNRTG 2 cut(s) 57, 176
SaqAI TTAA 2 cut(s) 96, 129
SatI GCNGC 1 cut(s) 468
Sau3AI GATC 4 cut(s) 153, 386, 398, 430
SetI ASST 3 cut(s) 176, 345, 472
SmiMI CAYNNNNRTG 2 cut(s) 57, 176
SphI GCATGC 1 cut(s) 66
SseBI AGGCCT 1 cut(s) 199
SspMI CTAG 2 cut(s) 83, 544
StuI AGGCCT 1 cut(s) 199
TaaI ACNGT 1 cut(s) 235
TaiI ACGT 1 cut(s) 176
TaqI TCGA 2 cut(s) 263, 474
TfiI GAWTC 3 cut(s) 122, 278, 443
Tru1I TTAA 2 cut(s) 96, 129
Tru9I TTAA 2 cut(s) 96, 129
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 1 cut(s) 467
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 2 cut(s) 288, 477
Tth111I GACNNNGTC 1 cut(s) 172
XceI RCATGY 1 cut(s) 66
XspI CTAG 2 cut(s) 83, 544
Zsp2I ATGCAT 2 cut(s) 54, 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.