Rroxscaffold_3G00254200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0012994
Physical Location & Seq
Forward (+)
48337075 .. 48338980
1906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00254200.1

Sequence Viewer

Length: 549 bp
ATGTCTTCCAAAATCGTTGTTCTCCTTGTTCTGGTATCATGTCTCTATATGCATACGTATGCATGCAATGCCGGCAGAGTTCTAGGCGTCTCTGTTAAGGAAAGTGGCAGTCAAATCCACGATTCTGTTAATGAGGGTGTAGAGAAAGTATTGATCCAACTTTCAGAGACCACGTCAATGCCATCATCAACTCGGAGGCCTTCCATGTCAGTAGAAGTGAAAAACCCTGAAACAGTAGTCGCCCACGAGAAGGCTGATTTTTCGAGGAAACAAGGAGAATCTGCCACTAAACCAACTTCATCAGGACATGATATTATTACATTATCTACTTCTTCTCAGATTGACCTGCAATATCAAGTTGAACTGAAGGGATTGAAGAGGCAGGCACGATCGGTACTGGGATCTGCAATACAAGACAATGATATTGAGGAGGATCACAATACAGATTCTGAGGGAAGTTCTAATGAAGCAGCTATCGATGAGGATGTCGGTGTCATGGACTATGCAAACCCTCACAGGAAACCACCCATTCACAATCAAAAGCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

19.8

Weight (kDa)

5.46

Isoelectric Point (pI)

64.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLV1-2 PF21529 128 - 179 1.8e-06 Gloven 1/2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012994)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16515 AT4G16515
fragaria_vesca FvH4_5g00070
malus_domestica MD00G1115000.v1.1
prunus_persica Prupe.5G072500_v2.0.a1 Prupe.5G072500_v2.0.a1
pyrus_communis pycom133g00170
rosa_chinensis RchiOBHm_Chr7g0202891
rosa_laevigata RLG00000003566
rosa_multiflora Rmu_sc0033032.1_g000001
rosa_roxburghii Rroxscaffold_3G00254200
rosa_rugosa Rorug07G0073600 Rorug07G0073700
rosa_samantha Rh7AG201400 Rh7BG201800 Rh7CG212900 Rh7DG208400
rosa_wichuraiana Rw7G017620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 354
AclWI GGATC 3 cut(s) 148, 409, 441
AcuI CTGAAG 1 cut(s) 386
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 1 cut(s) 396
AfiI CCNNNNNNNGG 2 cut(s) 31, 250
AgsI TTSAA 2 cut(s) 362, 376
AjiI CACGTC 1 cut(s) 174
AluBI AGCT 1 cut(s) 473
AluI AGCT 1 cut(s) 473
Alw26I GTCTC 3 cut(s) 47, 94, 161
AlwI GGATC 3 cut(s) 148, 409, 441
AlwNI CAGNNNCTG 1 cut(s) 449
AoxI GGCC 1 cut(s) 197
ApeKI GCWGC 1 cut(s) 470
BauI CACGAG 1 cut(s) 245
BbvI GCAGC 1 cut(s) 482
BccI CCATC 1 cut(s) 190
BcoDI GTCTC 3 cut(s) 47, 94, 161
BfaI CTAG 2 cut(s) 83, 547
BfuAI ACCTGC 1 cut(s) 354
BisI GCNGC 1 cut(s) 471
BlsI GCNGC 1 cut(s) 472
BmgBI CACGTC 1 cut(s) 174
BmrI ACTGGG 1 cut(s) 407
BmuI ACTGGG 1 cut(s) 407
Bsa29I ATCGAT 1 cut(s) 477
BsaAI YACGTR 1 cut(s) 57
BsaHI GRCGYC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 161
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 250
Bse118I RCCGGY 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 402
Bse3DI GCAATG 1 cut(s) 73
BseCI ATCGAT 1 cut(s) 477
BseGI GGATG 1 cut(s) 490
BseLI CCNNNNNNNGG 2 cut(s) 31, 250
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 2 cut(s) 350, 441
BseNI ACTGG 1 cut(s) 402
BseRI GAGGAG 1 cut(s) 443
BseXI GCAGC 1 cut(s) 482
Bsh1285I CGRYCG 1 cut(s) 392
BshFI GGCC 1 cut(s) 199
BshVI ATCGAT 1 cut(s) 477
BsiEI CGRYCG 1 cut(s) 392
BsiSI CCGG 1 cut(s) 72
BslI CCNNNNNNNGG 2 cut(s) 31, 250
BsmAI GTCTC 3 cut(s) 47, 94, 161
BsmBI CGTCTC 1 cut(s) 94
BsnI GGCC 1 cut(s) 199
Bso31I GGTCTC 1 cut(s) 161
Bsp143I GATC 4 cut(s) 153, 389, 401, 433
BspANI GGCC 1 cut(s) 199
BspCNI CTCAG 2 cut(s) 349, 442
BspDI ATCGAT 1 cut(s) 477
BspMI ACCTGC 1 cut(s) 354
BspPI GGATC 3 cut(s) 148, 409, 441
BspTNI GGTCTC 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 73
BsrFI RCCGGY 1 cut(s) 71
BsrI ACTGG 1 cut(s) 402
BssAI RCCGGY 1 cut(s) 71
BssMI GATC 4 cut(s) 153, 389, 401, 433
BssNI GRCGYC 1 cut(s) 87
BssSI CACGAG 1 cut(s) 245
Bst2BI CACGAG 1 cut(s) 245
Bst4CI ACNGT 1 cut(s) 235
Bst6I CTCTTC 1 cut(s) 371
BstACI GRCGYC 1 cut(s) 87
BstAPI GCANNNNNTGC 1 cut(s) 68
BstBAI YACGTR 1 cut(s) 57
BstC8I GCNNGC 3 cut(s) 64, 73, 384
BstDEI CTNAG 2 cut(s) 336, 450
BstF5I GGATG 1 cut(s) 490
BstKTI GATC 4 cut(s) 156, 392, 404, 436
BstMAI GTCTC 3 cut(s) 47, 94, 161
BstMBI GATC 4 cut(s) 153, 389, 401, 433
BstMCI CGRYCG 1 cut(s) 392
BstMWI GCNNNNNNNGC 2 cut(s) 68, 72
BstNSI RCATGY 1 cut(s) 66
BstSNI TACGTA 1 cut(s) 57
BstV1I GCAGC 1 cut(s) 482
BstX2I RGATCY 1 cut(s) 401
BstYI RGATCY 1 cut(s) 401
Bsu15I ATCGAT 1 cut(s) 477
BsuRI GGCC 1 cut(s) 199
BsuTUI ATCGAT 1 cut(s) 477
BtrI CACGTC 1 cut(s) 174
BtsCI GGATG 1 cut(s) 490
BveI ACCTGC 1 cut(s) 354
Cac8I GCNNGC 3 cut(s) 64, 73, 384
CaiI CAGNNNCTG 1 cut(s) 449
Cfr10I RCCGGY 1 cut(s) 71
ClaI ATCGAT 1 cut(s) 477
CseI GACGC 1 cut(s) 76
Csp6I GTAC 1 cut(s) 395
CviAII CATG 5 cut(s) 39, 63, 205, 308, 496
CviJI RGCY 4 cut(s) 199, 254, 473, 544
CviKI_1 RGCY 4 cut(s) 199, 254, 473, 544
CviQI GTAC 1 cut(s) 395
DdeI CTNAG 2 cut(s) 336, 450
DpnI GATC 4 cut(s) 155, 391, 403, 435
DpnII GATC 4 cut(s) 153, 389, 401, 433
Eam1104I CTCTTC 1 cut(s) 371
EarI CTCTTC 1 cut(s) 371
Eco105I TACGTA 1 cut(s) 57
Eco147I AGGCCT 1 cut(s) 199
Eco31I GGTCTC 1 cut(s) 161
Eco57I CTGAAG 1 cut(s) 386
EcoT22I ATGCAT 2 cut(s) 54, 64
Esp3I CGTCTC 1 cut(s) 94
FaeI CATG 5 cut(s) 42, 66, 208, 311, 499
FatI CATG 5 cut(s) 38, 62, 204, 307, 495
Fnu4HI GCNGC 1 cut(s) 471
FokI GGATG 1 cut(s) 497
Fsp4HI GCNGC 1 cut(s) 471
FspBI CTAG 2 cut(s) 83, 547
GluI GCNGC 1 cut(s) 471
HaeIII GGCC 1 cut(s) 199
HapII CCGG 1 cut(s) 72
HgaI GACGC 1 cut(s) 76
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 5 cut(s) 42, 66, 208, 311, 499
HinfI GANTC 3 cut(s) 122, 278, 446
HpaII CCGG 1 cut(s) 72
Hpy188I TCNGA 4 cut(s) 166, 195, 339, 451
Hpy188III TCNNGA 1 cut(s) 303
HpyAV CCTTC 3 cut(s) 210, 244, 361
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4IV ACGT 2 cut(s) 56, 173
HpyCH4V TGCA 6 cut(s) 52, 62, 66, 349, 407, 506
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 72
HpyF3I CTNAG 2 cut(s) 336, 450
HpySE526I ACGT 2 cut(s) 56, 173
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 5 cut(s) 42, 66, 208, 311, 499
KroI GCCGGC 1 cut(s) 71
KroNI GCCGGC 1 cut(s) 73
Kzo9I GATC 4 cut(s) 153, 389, 401, 433
LpnPI CCDG 8 cut(s) 17, 85, 240, 288, 359, 368, 383, 502
Lsp1109I GCAGC 1 cut(s) 482
MaeI CTAG 2 cut(s) 83, 547
MaeII ACGT 2 cut(s) 56, 173
MalI GATC 4 cut(s) 155, 391, 403, 435
MboI GATC 4 cut(s) 153, 389, 401, 433
MboII GAAGA 2 cut(s) 324, 388
MflI RGATCY 1 cut(s) 401
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 9 cut(s) 127, 189, 258, 372, 421, 424, 445, 475, 522
Mph1103I ATGCAT 2 cut(s) 54, 64
MroNI GCCGGC 1 cut(s) 71
MseI TTAA 2 cut(s) 96, 129
MslI CAYNNNNRTG 2 cut(s) 57, 176
MspI CCGG 1 cut(s) 72
MwoI GCNNNNNNNGC 2 cut(s) 68, 72
NaeI GCCGGC 1 cut(s) 73
NdeII GATC 4 cut(s) 153, 389, 401, 433
NgoMIV GCCGGC 1 cut(s) 71
NlaIII CATG 5 cut(s) 42, 66, 208, 311, 499
NsiI ATGCAT 2 cut(s) 54, 64
NspI RCATGY 1 cut(s) 66
PaeI GCATGC 1 cut(s) 66
PceI AGGCCT 1 cut(s) 199
PdiI GCCGGC 1 cut(s) 73
PfeI GAWTC 3 cut(s) 122, 278, 446
PflFI GACNNNGTC 1 cut(s) 172
PkrI GCNGC 1 cut(s) 472
Ple19I CGATCG 1 cut(s) 392
Ppu21I YACGTR 1 cut(s) 57
PstNI CAGNNNCTG 1 cut(s) 449
PsuI RGATCY 1 cut(s) 401
PsyI GACNNNGTC 1 cut(s) 172
PvuI CGATCG 1 cut(s) 392
RsaI GTAC 1 cut(s) 396
RsaNI GTAC 1 cut(s) 395
RseI CAYNNNNRTG 2 cut(s) 57, 176
SaqAI TTAA 2 cut(s) 96, 129
SatI GCNGC 1 cut(s) 471
Sau3AI GATC 4 cut(s) 153, 389, 401, 433
SetI ASST 4 cut(s) 59, 176, 348, 475
SmiMI CAYNNNNRTG 2 cut(s) 57, 176
SnaBI TACGTA 1 cut(s) 57
SphI GCATGC 1 cut(s) 66
SseBI AGGCCT 1 cut(s) 199
SspMI CTAG 2 cut(s) 83, 547
StuI AGGCCT 1 cut(s) 199
TaaI ACNGT 1 cut(s) 235
TaiI ACGT 2 cut(s) 59, 176
TaqI TCGA 2 cut(s) 263, 477
TfiI GAWTC 3 cut(s) 122, 278, 446
Tru1I TTAA 2 cut(s) 96, 129
Tru9I TTAA 2 cut(s) 96, 129
TseI GCWGC 1 cut(s) 470
TspDTI ATGAA 2 cut(s) 288, 480
Tth111I GACNNNGTC 1 cut(s) 172
XceI RCATGY 1 cut(s) 66
XspI CTAG 2 cut(s) 83, 547
Zsp2I ATGCAT 2 cut(s) 54, 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.