Rmu_sc0033032.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0033032.1
OG0012994
Physical Location & Seq
Forward (+)
1 .. 371
371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0033032.1_g000001.1.cds

Sequence Viewer

Length: 180 bp
ggattgaagaggcaggcacgatcggtactgggatctgcaatacaagacaatgatattgaggaggatcataatacagattctgagggaagttcaaatgaagcagctatcgatgaggatgtcggtgtcatggactacgcaaaccctcacaagaaaccacccattcacaatcaaaagccctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

59

Amino Acids

6.44

Weight (kDa)

4.7

Isoelectric Point (pI)

71.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012994)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16515 AT4G16515
fragaria_vesca FvH4_5g00070
malus_domestica MD00G1115000.v1.1
prunus_persica Prupe.5G072500_v2.0.a1 Prupe.5G072500_v2.0.a1
pyrus_communis pycom133g00170
rosa_chinensis RchiOBHm_Chr7g0202891
rosa_laevigata RLG00000003566
rosa_multiflora Rmu_sc0033032.1_g000001
rosa_roxburghii Rroxscaffold_3G00254200
rosa_rugosa Rorug07G0073600 Rorug07G0073700
rosa_samantha Rh7AG201400 Rh7BG201800 Rh7CG212900 Rh7DG208400
rosa_wichuraiana Rw7G017620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 40, 72
AfaI GTAC 1 cut(s) 27
AgsI TTSAA 2 cut(s) 7, 93
AluBI AGCT 1 cut(s) 104
AluI AGCT 1 cut(s) 104
AlwI GGATC 2 cut(s) 40, 72
AlwNI CAGNNNCTG 1 cut(s) 80
ApeKI GCWGC 1 cut(s) 101
BbvI GCAGC 1 cut(s) 113
BfaI CTAG 1 cut(s) 178
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
BmrI ACTGGG 1 cut(s) 38
BmuI ACTGGG 1 cut(s) 38
Bsa29I ATCGAT 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 33
BseCI ATCGAT 1 cut(s) 108
BseGI GGATG 1 cut(s) 121
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 33
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 1 cut(s) 113
Bsh1285I CGRYCG 1 cut(s) 23
BshVI ATCGAT 1 cut(s) 108
BsiEI CGRYCG 1 cut(s) 23
Bsp143I GATC 3 cut(s) 20, 32, 64
BspCNI CTCAG 1 cut(s) 73
BspDI ATCGAT 1 cut(s) 108
BspPI GGATC 2 cut(s) 40, 72
BsrI ACTGG 1 cut(s) 33
BssMI GATC 3 cut(s) 20, 32, 64
Bst6I CTCTTC 1 cut(s) 2
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 1 cut(s) 81
BstF5I GGATG 1 cut(s) 121
BstKTI GATC 3 cut(s) 23, 35, 67
BstMBI GATC 3 cut(s) 20, 32, 64
BstMCI CGRYCG 1 cut(s) 23
BstV1I GCAGC 1 cut(s) 113
BstX2I RGATCY 1 cut(s) 32
BstYI RGATCY 1 cut(s) 32
Bsu15I ATCGAT 1 cut(s) 108
BsuTUI ATCGAT 1 cut(s) 108
BtsCI GGATG 1 cut(s) 121
Cac8I GCNNGC 1 cut(s) 15
CaiI CAGNNNCTG 1 cut(s) 80
ClaI ATCGAT 1 cut(s) 108
Csp6I GTAC 1 cut(s) 26
CviAII CATG 1 cut(s) 127
CviJI RGCY 2 cut(s) 104, 175
CviKI_1 RGCY 2 cut(s) 104, 175
CviQI GTAC 1 cut(s) 26
DdeI CTNAG 1 cut(s) 81
DpnI GATC 3 cut(s) 22, 34, 66
DpnII GATC 3 cut(s) 20, 32, 64
Eam1104I CTCTTC 1 cut(s) 2
EarI CTCTTC 1 cut(s) 2
FaeI CATG 1 cut(s) 130
FaiI YATR 2 cut(s) 69, 128
FatI CATG 1 cut(s) 126
Fnu4HI GCNGC 1 cut(s) 102
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 1 cut(s) 102
FspBI CTAG 1 cut(s) 178
GluI GCNGC 1 cut(s) 102
Hin1II CATG 1 cut(s) 130
HinfI GANTC 1 cut(s) 77
Hpy188I TCNGA 1 cut(s) 82
HpyCH4V TGCA 1 cut(s) 38
HpyF3I CTNAG 1 cut(s) 81
Hsp92II CATG 1 cut(s) 130
Kzo9I GATC 3 cut(s) 20, 32, 64
LpnPI CCDG 1 cut(s) 14
Lsp1109I GCAGC 1 cut(s) 113
MaeI CTAG 1 cut(s) 178
MalI GATC 3 cut(s) 22, 34, 66
MboI GATC 3 cut(s) 20, 32, 64
MboII GAAGA 1 cut(s) 19
MflI RGATCY 1 cut(s) 32
MnlI CCTC 6 cut(s) 3, 52, 55, 76, 106, 153
NdeII GATC 3 cut(s) 20, 32, 64
NlaIII CATG 1 cut(s) 130
PfeI GAWTC 1 cut(s) 77
PkrI GCNGC 1 cut(s) 103
Ple19I CGATCG 1 cut(s) 23
PstNI CAGNNNCTG 1 cut(s) 80
PsuI RGATCY 1 cut(s) 32
PvuI CGATCG 1 cut(s) 23
RsaI GTAC 1 cut(s) 27
RsaNI GTAC 1 cut(s) 26
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 3 cut(s) 20, 32, 64
SetI ASST 1 cut(s) 106
SgeI CNNG 6 cut(s) 26, 30, 41, 56, 139, 160
SspMI CTAG 1 cut(s) 178
TaqI TCGA 1 cut(s) 108
TfiI GAWTC 1 cut(s) 77
TseI GCWGC 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 111
XspI CTAG 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.