Prupe.5G072500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0012994
Physical Location & Seq
Forward (+)
8722019 .. 8725271
3253 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G072500.1

Sequence Viewer

Length: 489 bp
ATGTCTTCCATTGTTCTTCTCTTTTTTCTTTGTCTTTCTATCCATGCATGCAATTCCCGACTTCTAGGCCTTGTTGATAAGCAAAGTGGCAGTAAATCCTACCATTCTGTTGAGGATGTAGCGAAAGTCTTAAGTGAGACTTTAAAGTCATCGATGATGCCTACCATCTCAGTTGAATACCAAGCACAACAAATAAACGCTGAAACATTCACCCATGAAAGTATCCCGACGGCTCTTTTGAGGAAACAAGGGCATGCCAATGGACCAGCCTCAGGATATGATATTATTGCATTATCTTCCCAGGTTGAGCTGAAGAAATTGATTGAAATGCAGGGATTGAAGAGGCAGGCACGGACATTACTGGGATCTGCAACACATAACATGGAGGAAGACAAAGATTCGAAGGAAGATGAAGCTATTGAGGTCGTAGGTGTTATGGATTATGCACAACCTCACAGGAAGCCACCCATTCACAATAGAAAGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

17.92

Weight (kDa)

6.65

Isoelectric Point (pI)

54.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012994)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16515 AT4G16515
fragaria_vesca FvH4_5g00070
malus_domestica MD00G1115000.v1.1
prunus_persica Prupe.5G072500_v2.0.a1 Prupe.5G072500_v2.0.a1
pyrus_communis pycom133g00170
rosa_chinensis RchiOBHm_Chr7g0202891
rosa_laevigata RLG00000003566
rosa_multiflora Rmu_sc0033032.1_g000001
rosa_roxburghii Rroxscaffold_3G00254200
rosa_rugosa Rorug07G0073600 Rorug07G0073700
rosa_samantha Rh7AG201400 Rh7BG201800 Rh7CG212900 Rh7DG208400
rosa_wichuraiana Rw7G017620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 145
AclWI GGATC 1 cut(s) 373
AcuI CTGAAG 1 cut(s) 332
AfiI CCNNNNNNNGG 1 cut(s) 272
AflII CTTAAG 1 cut(s) 130
AgsI TTSAA 3 cut(s) 176, 326, 340
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 2 cut(s) 310, 416
AluI AGCT 2 cut(s) 310, 416
Alw26I GTCTC 1 cut(s) 131
AlwI GGATC 1 cut(s) 373
AoxI GGCC 1 cut(s) 67
ArsI GACNNNNNNTTYG 2 cut(s) 220, 252
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 202
AsuII TTCGAA 1 cut(s) 401
AvaII GGWCC 1 cut(s) 263
AxyI CCTNAGG 1 cut(s) 271
BbsI GAAGAC 1 cut(s) 396
BccI CCATC 1 cut(s) 173
BceAI ACGGC 1 cut(s) 246
BciT130I CCWGG 1 cut(s) 302
BciVI GTATCC 1 cut(s) 233
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 2 cut(s) 65, 487
BfrI CTTAAG 1 cut(s) 130
BfuI GTATCC 1 cut(s) 233
Bme1390I CCNGG 1 cut(s) 302
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 263
BmrFI CCNGG 1 cut(s) 302
BmrI ACTGGG 1 cut(s) 371
BmsI GCATC 1 cut(s) 147
BmuI ACTGGG 1 cut(s) 371
BpiI GAAGAC 1 cut(s) 396
Bpu14I TTCGAA 1 cut(s) 401
Bsa29I ATCGAT 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 300
Bsc4I CCNNNNNNNGG 1 cut(s) 272
Bse1I ACTGG 1 cut(s) 366
Bse21I CCTNAGG 1 cut(s) 271
BseBI CCWGG 1 cut(s) 302
BseCI ATCGAT 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 300
BseGI GGATG 1 cut(s) 121
BseLI CCNNNNNNNGG 1 cut(s) 272
BseMII CTCAG 2 cut(s) 183, 285
BseNI ACTGG 1 cut(s) 366
BshFI GGCC 1 cut(s) 69
BshVI ATCGAT 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 272
BsmAI GTCTC 1 cut(s) 131
BsnI GGCC 1 cut(s) 69
Bsp119I TTCGAA 1 cut(s) 401
Bsp143I GATC 1 cut(s) 365
BspANI GGCC 1 cut(s) 69
BspCNI CTCAG 2 cut(s) 182, 284
BspDI ATCGAT 1 cut(s) 152
BspPI GGATC 1 cut(s) 373
BspT104I TTCGAA 1 cut(s) 401
BspTI CTTAAG 1 cut(s) 130
BsrI ACTGG 1 cut(s) 366
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 1 cut(s) 365
Bst2UI CCWGG 1 cut(s) 302
Bst6I CTCTTC 1 cut(s) 335
BstAFI CTTAAG 1 cut(s) 130
BstBI TTCGAA 1 cut(s) 401
BstC8I GCNNGC 3 cut(s) 49, 255, 348
BstDEI CTNAG 2 cut(s) 169, 271
BstF5I GGATG 1 cut(s) 121
BstKTI GATC 1 cut(s) 368
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 1 cut(s) 365
BstNI CCWGG 1 cut(s) 302
BstNSI RCATGY 2 cut(s) 51, 257
BstSCI CCNGG 1 cut(s) 300
BstV2I GAAGAC 1 cut(s) 396
BstX2I RGATCY 1 cut(s) 365
BstYI RGATCY 1 cut(s) 365
Bsu15I ATCGAT 1 cut(s) 152
Bsu36I CCTNAGG 1 cut(s) 271
BsuI GTATCC 1 cut(s) 233
BsuRI GGCC 1 cut(s) 69
BsuTUI ATCGAT 1 cut(s) 152
BtsCI GGATG 1 cut(s) 121
Cac8I GCNNGC 3 cut(s) 49, 255, 348
Cfr13I GGNCC 1 cut(s) 263
ClaI ATCGAT 1 cut(s) 152
CviAII CATG 5 cut(s) 44, 48, 215, 254, 382
CviJI RGCY 6 cut(s) 69, 233, 269, 310, 416, 463
CviKI_1 RGCY 6 cut(s) 69, 233, 269, 310, 416, 463
DdeI CTNAG 2 cut(s) 169, 271
DpnI GATC 1 cut(s) 367
DpnII GATC 1 cut(s) 365
DraI TTTAAA 1 cut(s) 144
DrdI GACNNNNNNGTC 1 cut(s) 145
DseDI GACNNNNNNGTC 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 335
EarI CTCTTC 1 cut(s) 335
Eco147I AGGCCT 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 263
Eco57I CTGAAG 1 cut(s) 332
Eco81I CCTNAGG 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 300
EcoT22I ATGCAT 1 cut(s) 49
FaeI CATG 5 cut(s) 47, 51, 218, 257, 385
FaiI YATR 9 cut(s) 45, 49, 216, 255, 279, 378, 383, 437, 444
FalI AAGNNNNNCTT 2 cut(s) 124, 156
FatI CATG 5 cut(s) 43, 47, 214, 253, 381
FokI GGATG 1 cut(s) 128
FspBI CTAG 2 cut(s) 65, 487
HaeIII GGCC 1 cut(s) 69
Hin1II CATG 5 cut(s) 47, 51, 218, 257, 385
HinfI GANTC 1 cut(s) 398
HphI GGTGA 1 cut(s) 202
Hpy188III TCNNGA 3 cut(s) 57, 226, 273
Hpy99I CGWCG 1 cut(s) 232
HpyAV CCTTC 1 cut(s) 397
HpyCH4V TGCA 6 cut(s) 47, 51, 290, 331, 371, 446
HpyF3I CTNAG 2 cut(s) 169, 271
Hsp92II CATG 5 cut(s) 47, 51, 218, 257, 385
Kzo9I GATC 1 cut(s) 365
LpnPI CCDG 8 cut(s) 258, 279, 287, 314, 317, 332, 347, 442
LweI GCATC 1 cut(s) 147
MaeI CTAG 2 cut(s) 65, 487
MalI GATC 1 cut(s) 367
MboI GATC 1 cut(s) 365
MboII GAAGA 6 cut(s) 8, 288, 325, 352, 401, 419
MflI RGATCY 1 cut(s) 365
MluCI AATT 2 cut(s) 52, 317
MnlI CCTC 7 cut(s) 106, 234, 280, 336, 379, 415, 462
Mph1103I ATGCAT 1 cut(s) 49
MseI TTAA 2 cut(s) 131, 143
MslI CAYNNNNRTG 1 cut(s) 258
MspCI CTTAAG 1 cut(s) 130
MspR9I CCNGG 1 cut(s) 302
MvaI CCWGG 1 cut(s) 302
NdeII GATC 1 cut(s) 365
NlaIII CATG 5 cut(s) 47, 51, 218, 257, 385
NsiI ATGCAT 1 cut(s) 49
NspI RCATGY 2 cut(s) 51, 257
NspV TTCGAA 1 cut(s) 401
PaeI GCATGC 2 cut(s) 51, 257
PceI AGGCCT 1 cut(s) 69
PfeI GAWTC 1 cut(s) 398
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PspPI GGNCC 1 cut(s) 263
PsuI RGATCY 1 cut(s) 365
RseI CAYNNNNRTG 1 cut(s) 258
SaqAI TTAA 2 cut(s) 131, 143
Sau3AI GATC 1 cut(s) 365
Sau96I GGNCC 1 cut(s) 263
ScrFI CCNGG 1 cut(s) 302
SetI ASST 6 cut(s) 306, 312, 418, 426, 433, 454
SfaNI GCATC 1 cut(s) 147
SfuI TTCGAA 1 cut(s) 401
SinI GGWCC 1 cut(s) 263
SmiMI CAYNNNNRTG 1 cut(s) 258
SmlI CTYRAG 1 cut(s) 130
SmoI CTYRAG 1 cut(s) 130
SphI GCATGC 2 cut(s) 51, 257
Sse9I AATT 2 cut(s) 52, 317
SseBI AGGCCT 1 cut(s) 69
SspMI CTAG 2 cut(s) 65, 487
StuI AGGCCT 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 300
TaqI TCGA 2 cut(s) 152, 401
TasI AATT 2 cut(s) 52, 317
TfiI GAWTC 1 cut(s) 398
Tru1I TTAA 2 cut(s) 131, 143
Tru9I TTAA 2 cut(s) 131, 143
TspDTI ATGAA 2 cut(s) 231, 426
TspGWI ACGGA 1 cut(s) 367
Vha464I CTTAAG 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 263
XceI RCATGY 2 cut(s) 51, 257
XspI CTAG 2 cut(s) 65, 487
Zsp2I ATGCAT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.