FvH4_5g00070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0012994
Physical Location & Seq
Forward (+)
49531 .. 51048
1518 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g00070.t1

Sequence Viewer

Length: 552 bp
ATGACTCCGAAAATCATTGTTCTCCTTGTTCTGGTATCATGTCTCTATATGCATATGTATGCATGCAATGCCGGCCGAGTTCTAGGCTTCTCTATTGAGGAAAGTGGCAGCCAATTCCACGATTCTGTTAATGAGGATTTAGAGAGAGTATTGACCAAACTTTCCGAGACCACATCAATGCCATCATCAACTCGGAGGCCTTCCATGTCAGTACAAGTGAAAAACCCTGAAACAGTAGTCATCCACGAGAAGGCTGATGTTTCGAAGAAACAAGGAGAAGCTGCTTCTAAACCAACTTCATCATCAGGACTCGATGTTGTTACATTATTTACTTCTTCTCAGATTGACCAGCAATATCAGATTGAACTGAAGGGATCGAAGAGGCAGGCGCGATCGGTACTGGGATCTGCAACACAAGACAATGACATTGAGGAGGATCATGATACAGATTCTGAGGGAAGTTCAAATGAAGCAGCTATTGACGAGGATGTTGGTGTCATGGACTATGCAAACCCTCACAAGAAACCACCCATTCACAATGAAAGGCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

20.08

Weight (kDa)

5.01

Isoelectric Point (pI)

69.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLV1-2 PF21529 129 - 180 7e-07 Gloven 1/2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012994)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16515 AT4G16515
fragaria_vesca FvH4_5g00070
malus_domestica MD00G1115000.v1.1
prunus_persica Prupe.5G072500_v2.0.a1 Prupe.5G072500_v2.0.a1
pyrus_communis pycom133g00170
rosa_chinensis RchiOBHm_Chr7g0202891
rosa_laevigata RLG00000003566
rosa_multiflora Rmu_sc0033032.1_g000001
rosa_roxburghii Rroxscaffold_3G00254200
rosa_rugosa Rorug07G0073600 Rorug07G0073700
rosa_samantha Rh7AG201400 Rh7BG201800 Rh7CG212900 Rh7DG208400
rosa_wichuraiana Rw7G017620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 391
AclWI GGATC 3 cut(s) 382, 412, 444
AcoI YGGCCR 1 cut(s) 73
AcuI CTGAAG 1 cut(s) 389
AfaI GTAC 2 cut(s) 213, 399
AfiI CCNNNNNNNGG 2 cut(s) 31, 250
AgsI TTSAA 2 cut(s) 365, 465
AluBI AGCT 2 cut(s) 281, 476
AluI AGCT 2 cut(s) 281, 476
Alw26I GTCTC 2 cut(s) 47, 161
AlwI GGATC 3 cut(s) 382, 412, 444
AlwNI CAGNNNCTG 1 cut(s) 452
AoxI GGCC 3 cut(s) 73, 197, 545
ApeKI GCWGC 3 cut(s) 108, 281, 473
AspLEI GCGC 1 cut(s) 391
AspS9I GGNCC 1 cut(s) 546
AsuII TTCGAA 1 cut(s) 263
BauI CACGAG 1 cut(s) 245
BbvI GCAGC 3 cut(s) 120, 268, 485
BccI CCATC 1 cut(s) 190
BcoDI GTCTC 2 cut(s) 47, 161
BfaI CTAG 2 cut(s) 83, 550
BisI GCNGC 3 cut(s) 109, 282, 474
BlsI GCNGC 3 cut(s) 110, 283, 475
BmgT120I GGNCC 1 cut(s) 546
BmrI ACTGGG 1 cut(s) 410
BmuI ACTGGG 1 cut(s) 410
Bpu14I TTCGAA 1 cut(s) 263
BsaI GGTCTC 1 cut(s) 161
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 250
Bse118I RCCGGY 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 405
Bse3DI GCAATG 1 cut(s) 73
BseGI GGATG 2 cut(s) 240, 493
BseLI CCNNNNNNNGG 2 cut(s) 31, 250
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 2 cut(s) 353, 444
BseNI ACTGG 1 cut(s) 405
BseRI GAGGAG 1 cut(s) 446
BseX3I CGGCCG 1 cut(s) 73
BseXI GCAGC 3 cut(s) 120, 268, 485
Bsh1236I CGCG 1 cut(s) 391
Bsh1285I CGRYCG 2 cut(s) 76, 395
BshFI GGCC 3 cut(s) 75, 199, 547
BsiEI CGRYCG 2 cut(s) 76, 395
BsiSI CCGG 1 cut(s) 72
BslI CCNNNNNNNGG 2 cut(s) 31, 250
BsmAI GTCTC 2 cut(s) 47, 161
BsnI GGCC 3 cut(s) 75, 199, 547
Bso31I GGTCTC 1 cut(s) 161
Bsp119I TTCGAA 1 cut(s) 263
Bsp143I GATC 4 cut(s) 374, 392, 404, 436
BspANI GGCC 3 cut(s) 75, 199, 547
BspCNI CTCAG 2 cut(s) 352, 445
BspFNI CGCG 1 cut(s) 391
BspHI TCATGA 1 cut(s) 439
BspPI GGATC 3 cut(s) 382, 412, 444
BspT104I TTCGAA 1 cut(s) 263
BspTNI GGTCTC 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 73
BsrFI RCCGGY 1 cut(s) 71
BsrI ACTGG 1 cut(s) 405
BssAI RCCGGY 1 cut(s) 71
BssMI GATC 4 cut(s) 374, 392, 404, 436
BssSI CACGAG 1 cut(s) 245
Bst2BI CACGAG 1 cut(s) 245
Bst4CI ACNGT 1 cut(s) 235
Bst6I CTCTTC 1 cut(s) 374
BstAPI GCANNNNNTGC 1 cut(s) 68
BstBI TTCGAA 1 cut(s) 263
BstC8I GCNNGC 3 cut(s) 64, 73, 387
BstDEI CTNAG 2 cut(s) 339, 453
BstF5I GGATG 2 cut(s) 240, 493
BstFNI CGCG 1 cut(s) 391
BstHHI GCGC 1 cut(s) 391
BstKTI GATC 4 cut(s) 377, 395, 407, 439
BstMAI GTCTC 2 cut(s) 47, 161
BstMBI GATC 4 cut(s) 374, 392, 404, 436
BstMCI CGRYCG 2 cut(s) 76, 395
BstMWI GCNNNNNNNGC 2 cut(s) 68, 72
BstNSI RCATGY 1 cut(s) 66
BstUI CGCG 1 cut(s) 391
BstV1I GCAGC 3 cut(s) 120, 268, 485
BstX2I RGATCY 1 cut(s) 404
BstYI RGATCY 1 cut(s) 404
BstZI CGGCCG 1 cut(s) 73
BsuRI GGCC 3 cut(s) 75, 199, 547
BtsCI GGATG 2 cut(s) 240, 493
Cac8I GCNNGC 3 cut(s) 64, 73, 387
CaiI CAGNNNCTG 1 cut(s) 452
CciI TCATGA 1 cut(s) 439
CfoI GCGC 1 cut(s) 391
Cfr10I RCCGGY 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 546
Csp6I GTAC 2 cut(s) 212, 398
CviAII CATG 5 cut(s) 39, 63, 205, 440, 499
CviJI RGCY 8 cut(s) 75, 87, 111, 199, 254, 281, 476, 547
CviKI_1 RGCY 8 cut(s) 75, 87, 111, 199, 254, 281, 476, 547
CviQI GTAC 2 cut(s) 212, 398
DdeI CTNAG 2 cut(s) 339, 453
DpnI GATC 4 cut(s) 376, 394, 406, 438
DpnII GATC 4 cut(s) 374, 392, 404, 436
EaeI YGGCCR 1 cut(s) 73
EagI CGGCCG 1 cut(s) 73
Eam1104I CTCTTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 374
EclXI CGGCCG 1 cut(s) 73
Eco147I AGGCCT 1 cut(s) 199
Eco31I GGTCTC 1 cut(s) 161
Eco52I CGGCCG 1 cut(s) 73
Eco57I CTGAAG 1 cut(s) 389
EcoO109I RGGNCCY 1 cut(s) 546
EcoT22I ATGCAT 2 cut(s) 54, 64
FaeI CATG 5 cut(s) 42, 66, 208, 443, 502
FatI CATG 5 cut(s) 38, 62, 204, 439, 498
FauNDI CATATG 1 cut(s) 54
Fnu4HI GCNGC 3 cut(s) 109, 282, 474
FokI GGATG 2 cut(s) 227, 500
Fsp4HI GCNGC 3 cut(s) 109, 282, 474
FspBI CTAG 2 cut(s) 83, 550
GlaI GCGC 1 cut(s) 390
GluI GCNGC 3 cut(s) 109, 282, 474
HaeIII GGCC 3 cut(s) 75, 199, 547
HapII CCGG 1 cut(s) 72
HhaI GCGC 1 cut(s) 391
Hin1II CATG 5 cut(s) 42, 66, 208, 443, 502
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HinfI GANTC 4 cut(s) 4, 122, 309, 449
HpaII CCGG 1 cut(s) 72
Hpy188I TCNGA 6 cut(s) 9, 166, 195, 342, 360, 454
Hpy188III TCNNGA 2 cut(s) 306, 440
HpyAV CCTTC 3 cut(s) 210, 244, 364
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4V TGCA 5 cut(s) 52, 62, 66, 410, 509
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 72
HpyF3I CTNAG 2 cut(s) 339, 453
Hsp92II CATG 5 cut(s) 42, 66, 208, 443, 502
HspAI GCGC 1 cut(s) 389
KroI GCCGGC 1 cut(s) 71
KroNI GCCGGC 1 cut(s) 73
Kzo9I GATC 4 cut(s) 374, 392, 404, 436
LpnPI CCDG 7 cut(s) 17, 85, 240, 291, 362, 371, 386
Lsp1109I GCAGC 3 cut(s) 120, 268, 485
MaeI CTAG 2 cut(s) 83, 550
MaeIII GTNAC 1 cut(s) 319
MalI GATC 4 cut(s) 376, 394, 406, 438
MboI GATC 4 cut(s) 374, 392, 404, 436
MboII GAAGA 3 cut(s) 277, 327, 391
MflI RGATCY 1 cut(s) 404
MluCI AATT 1 cut(s) 113
MlyI GAGTC 1 cut(s) 303
MnlI CCTC 9 cut(s) 91, 127, 189, 375, 424, 427, 448, 478, 525
Mph1103I ATGCAT 2 cut(s) 54, 64
MroNI GCCGGC 1 cut(s) 71
MseI TTAA 1 cut(s) 129
MslI CAYNNNNRTG 2 cut(s) 57, 176
MspI CCGG 1 cut(s) 72
MvnI CGCG 1 cut(s) 391
MwoI GCNNNNNNNGC 2 cut(s) 68, 72
NaeI GCCGGC 1 cut(s) 73
NdeI CATATG 1 cut(s) 54
NdeII GATC 4 cut(s) 374, 392, 404, 436
NgoMIV GCCGGC 1 cut(s) 71
NlaIII CATG 5 cut(s) 42, 66, 208, 443, 502
NmeAIII GCCGAG 1 cut(s) 101
NsiI ATGCAT 2 cut(s) 54, 64
NspI RCATGY 1 cut(s) 66
NspV TTCGAA 1 cut(s) 263
PaeI GCATGC 1 cut(s) 66
PagI TCATGA 1 cut(s) 439
PceI AGGCCT 1 cut(s) 199
PdiI GCCGGC 1 cut(s) 73
PfeI GAWTC 2 cut(s) 122, 449
PkrI GCNGC 3 cut(s) 110, 283, 475
Ple19I CGATCG 1 cut(s) 395
PleI GAGTC 1 cut(s) 303
PpsI GAGTC 1 cut(s) 303
PspPI GGNCC 1 cut(s) 546
PstNI CAGNNNCTG 1 cut(s) 452
PsuI RGATCY 1 cut(s) 404
PvuI CGATCG 1 cut(s) 395
RsaI GTAC 2 cut(s) 213, 399
RsaNI GTAC 2 cut(s) 212, 398
RseI CAYNNNNRTG 2 cut(s) 57, 176
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 3 cut(s) 109, 282, 474
Sau3AI GATC 4 cut(s) 374, 392, 404, 436
Sau96I GGNCC 1 cut(s) 546
SchI GAGTC 1 cut(s) 303
SetI ASST 2 cut(s) 283, 478
SfuI TTCGAA 1 cut(s) 263
SmiMI CAYNNNNRTG 2 cut(s) 57, 176
SphI GCATGC 1 cut(s) 66
Sse9I AATT 1 cut(s) 113
SseBI AGGCCT 1 cut(s) 199
SspMI CTAG 2 cut(s) 83, 550
StuI AGGCCT 1 cut(s) 199
TaaI ACNGT 1 cut(s) 235
TaqI TCGA 3 cut(s) 263, 312, 377
TasI AATT 1 cut(s) 113
TatI WGTACW 1 cut(s) 211
TfiI GAWTC 2 cut(s) 122, 449
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TseI GCWGC 3 cut(s) 108, 281, 473
TspDTI ATGAA 2 cut(s) 288, 483
XceI RCATGY 1 cut(s) 66
XspI CTAG 2 cut(s) 83, 550
Zsp2I ATGCAT 2 cut(s) 54, 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.