AT4G16535

BEST Arabidopsis thaliana protein match is Family of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015036
Physical Location & Seq
Forward (+)
9313592 .. 9315772
2181 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G16535.1

Sequence Viewer

Length: 759 bp
ATGGGAGGTCACGGTGGTTTGAATATTCTTCCACAGAAGAGGTGGAACGTTTACAACTTCGACAATCGAGAAAAAGTCCGAAAGGAGGAAGAAGCTGCCGCTAGAGAAGAGCAGATCAAACGCGAGGAAGCTAGAAAACGAGATGCTGAATCTCGTCTCGAAGTGCTTCGTAACGTCCGTGGCTTGGCGCCTCTCAAACGAGCGTCTCCGGAGGCAGAGAAGGGTAAGGATGAAGCGGTGGTGGCGGCGGCTGTTGTTAAATCGACTGCTGTTGTTGTGGAGAGTGTTGAATCGGAGGAGCCTAAGACGGGTCATATTAATCTGTTCGAAGGGATTAGGATTTTTGATCCGATTGAGATCAAGAAGAATGATAAGCCTGCGGATGAGGAAGATCAGAGAAGGAAGAAGATGAGGAAAGAAGCGGCTGCAACGGCGAGAGCCTCTGCGAAAGATGCTGCTGCGAGAGCTGGTGATCCTGATGAGGAGAAGTATAGATTGGGATATGGAGTTGCTGGTAAAGGTGTGAAGCGTCCTTGGTACCTTGAGAAACGTAACGATGAAAATGATAGTGTTCGAGGTGAGGATGATGATGGTGGATGTGGTGGTTATGAAGCTAAGAAGAAGAAGATGAGTGGGAAGAAGAGCTTAAAGGAGTTGAGGGAAGAAAGGTTGAAGAGGGAGAGGGTTGAGAAGGAAAGAGAGAGAGCCCTTTTCATGAAACAGAGCCAGAGAGCCGGTGGTTTTTCCCGGAGGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF577

Protein Analysis

252

Amino Acids

28.65

Weight (kDa)

9.59

Isoelectric Point (pI)

63.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16535
fragaria_vesca FvH4_5g18710 FvH4_5g18710 FvH4_5g18710
malus_domestica MD04G1088600.v1.1
prunus_persica Prupe.5G071300_v2.0.a1
pyrus_communis pycom976g00180
rosa_chinensis RchiOBHm_Chr7g0203001
rosa_laevigata RLG00000003558
rosa_multiflora Rmu_sc0013377.1_g000001
rosa_roxburghii Rroxscaffold_3G00254110
rosa_rugosa Rorug07G0074100
rosa_samantha Rh7AG202400 Rh7BG202500 Rh7DG209500
rosa_wichuraiana Rw7G017700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 537
AccB1I GGYRCC 2 cut(s) 187, 537
AccII CGCG 1 cut(s) 123
AccIII TCCGGA 1 cut(s) 208
AciI CCGC 7 cut(s) 99, 236, 245, 248, 380, 422, 754
AclI AACGTT 1 cut(s) 48
AclWI GGATC 2 cut(s) 341, 467
AcyI GRCGYC 1 cut(s) 188
AfaI GTAC 1 cut(s) 539
AfiI CCNNNNNNNGG 4 cut(s) 85, 184, 308, 753
AgsI TTSAA 3 cut(s) 22, 290, 673
AjuI GAANNNNNNNTTGG 2 cut(s) 479, 511
AluBI AGCT 5 cut(s) 95, 131, 467, 614, 645
AluI AGCT 5 cut(s) 95, 131, 467, 614, 645
Alw26I GTCTC 2 cut(s) 161, 210
AlwI GGATC 2 cut(s) 341, 467
Aor13HI TCCGGA 1 cut(s) 208
ApeKI GCWGC 4 cut(s) 95, 425, 455, 458
AseI ATTAAT 1 cut(s) 318
Asp700I GAANNNNTTC 1 cut(s) 165
Asp718I GGTACC 1 cut(s) 537
AspLEI GCGC 1 cut(s) 190
AsuC2I CCSGG 1 cut(s) 748
AsuHPI GGTGA 2 cut(s) 482, 590
AsuII TTCGAA 1 cut(s) 327
BanI GGYRCC 2 cut(s) 187, 537
BanII GRGCYC 1 cut(s) 709
BbvI GCAGC 4 cut(s) 82, 412, 442, 445
BccI CCATC 1 cut(s) 584
BceAI ACGGC 1 cut(s) 447
BcnI CCSGG 1 cut(s) 748
BcoDI GTCTC 2 cut(s) 161, 210
BfaI CTAG 2 cut(s) 102, 132
BfoI RGCGCY 1 cut(s) 191
BisI GCNGC 8 cut(s) 96, 99, 246, 249, 423, 426, 456, 459
BlsI GCNGC 8 cut(s) 97, 100, 247, 250, 424, 427, 457, 460
Bme1390I CCNGG 1 cut(s) 748
BmiI GGNNCC 3 cut(s) 189, 300, 539
BmrFI CCNGG 1 cut(s) 748
BmsI GCATC 2 cut(s) 133, 442
Bpu14I TTCGAA 1 cut(s) 327
BpuEI CTTGAG 1 cut(s) 563
BpuMI CCSGG 1 cut(s) 748
BsaBI GATNNNNATC 1 cut(s) 356
BsaHI GRCGYC 1 cut(s) 188
BsaJI CCNNGG 2 cut(s) 178, 533
BsaWI WCCGGW 1 cut(s) 208
Bsc4I CCNNNNNNNGG 4 cut(s) 85, 184, 308, 753
Bse118I RCCGGY 1 cut(s) 734
Bse8I GATNNNNATC 1 cut(s) 356
BseAI TCCGGA 1 cut(s) 208
BseDI CCNNGG 2 cut(s) 178, 533
BseGI GGATG 4 cut(s) 235, 388, 589, 602
BseJI GATNNNNATC 1 cut(s) 356
BseLI CCNNNNNNNGG 4 cut(s) 85, 184, 308, 753
BseRI GAGGAG 2 cut(s) 311, 497
BseXI GCAGC 4 cut(s) 82, 412, 442, 445
Bsh1236I CGCG 1 cut(s) 123
BshNI GGYRCC 2 cut(s) 187, 537
BsiSI CCGG 3 cut(s) 209, 735, 748
BslI CCNNNNNNNGG 4 cut(s) 85, 184, 308, 753
BsmAI GTCTC 2 cut(s) 161, 210
BsmBI CGTCTC 2 cut(s) 161, 210
Bsp119I TTCGAA 1 cut(s) 327
Bsp1286I GDGCHC 1 cut(s) 709
Bsp13I TCCGGA 1 cut(s) 208
Bsp143I GATC 5 cut(s) 114, 346, 357, 391, 472
BspACI CCGC 7 cut(s) 99, 236, 245, 248, 380, 422, 754
BspEI TCCGGA 1 cut(s) 208
BspFNI CGCG 1 cut(s) 123
BspHI TCATGA 1 cut(s) 714
BspLI GGNNCC 3 cut(s) 189, 300, 539
BspPI GGATC 2 cut(s) 341, 467
BspQI GCTCTTC 2 cut(s) 102, 635
BspT104I TTCGAA 1 cut(s) 327
BspT107I GGYRCC 2 cut(s) 187, 537
BsrFI RCCGGY 1 cut(s) 734
BssAI RCCGGY 1 cut(s) 734
BssECI CCNNGG 2 cut(s) 178, 533
BssMI GATC 5 cut(s) 114, 346, 357, 391, 472
BssNI GRCGYC 1 cut(s) 188
BssT1I CCWWGG 1 cut(s) 533
Bst4CI ACNGT 1 cut(s) 14
Bst6I CTCTTC 4 cut(s) 32, 102, 635, 668
BstACI GRCGYC 1 cut(s) 188
BstBI TTCGAA 1 cut(s) 327
BstC8I GCNNGC 1 cut(s) 378
BstDEI CTNAG 2 cut(s) 303, 615
BstDSI CCRYGG 1 cut(s) 178
BstF5I GGATG 4 cut(s) 235, 388, 589, 602
BstFNI CGCG 1 cut(s) 123
BstH2I RGCGCY 1 cut(s) 191
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 5 cut(s) 117, 349, 360, 394, 475
BstMAI GTCTC 2 cut(s) 161, 210
BstMBI GATC 5 cut(s) 114, 346, 357, 391, 472
BstMWI GCNNNNNNNGC 4 cut(s) 242, 431, 452, 464
BstSCI CCNGG 1 cut(s) 746
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 4 cut(s) 82, 412, 442, 445
BtgI CCRYGG 1 cut(s) 178
BtsCI GGATG 4 cut(s) 235, 388, 589, 602
Cac8I GCNNGC 1 cut(s) 378
CciI TCATGA 1 cut(s) 714
CfoI GCGC 1 cut(s) 190
Cfr10I RCCGGY 1 cut(s) 734
CseI GACGC 2 cut(s) 192, 518
Csp6I GTAC 1 cut(s) 538
CviAII CATG 1 cut(s) 715
CviQI GTAC 1 cut(s) 538
DdeI CTNAG 2 cut(s) 303, 615
DinI GGCGCC 1 cut(s) 189
DpnI GATC 5 cut(s) 116, 348, 359, 393, 474
DpnII GATC 5 cut(s) 114, 346, 357, 391, 472
Eam1104I CTCTTC 4 cut(s) 32, 102, 635, 668
EarI CTCTTC 4 cut(s) 32, 102, 635, 668
Eco130I CCWWGG 1 cut(s) 533
Eco24I GRGCYC 1 cut(s) 709
EcoT14I CCWWGG 1 cut(s) 533
EcoT38I GRGCYC 1 cut(s) 709
EgeI GGCGCC 1 cut(s) 189
EheI GGCGCC 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 533
Esp3I CGTCTC 2 cut(s) 161, 210
FaeI CATG 1 cut(s) 718
FaiI YATR 5 cut(s) 315, 492, 504, 609, 716
FalI AAGNNNNNCTT 2 cut(s) 629, 661
FatI CATG 1 cut(s) 714
Fnu4HI GCNGC 8 cut(s) 96, 99, 246, 249, 423, 426, 456, 459
FokI GGATG 4 cut(s) 242, 395, 596, 609
FriOI GRGCYC 1 cut(s) 709
Fsp4HI GCNGC 8 cut(s) 96, 99, 246, 249, 423, 426, 456, 459
FspBI CTAG 2 cut(s) 102, 132
GlaI GCGC 1 cut(s) 189
GluI GCNGC 8 cut(s) 96, 99, 246, 249, 423, 426, 456, 459
HaeII RGCGCY 1 cut(s) 191
HapII CCGG 3 cut(s) 209, 735, 748
HgaI GACGC 2 cut(s) 192, 518
HhaI GCGC 1 cut(s) 190
Hin1I GRCGYC 1 cut(s) 188
Hin1II CATG 1 cut(s) 718
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HinfI GANTC 2 cut(s) 149, 290
HpaII CCGG 3 cut(s) 209, 735, 748
HphI GGTGA 2 cut(s) 482, 590
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 4 cut(s) 80, 295, 351, 396
Hpy188III TCNNGA 6 cut(s) 68, 158, 209, 361, 476, 715
Hpy8I GTNNAC 1 cut(s) 52
HpyAV CCTTC 4 cut(s) 214, 323, 393, 685
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4IV ACGT 3 cut(s) 48, 174, 550
HpyCH4V TGCA 1 cut(s) 428
HpyF10VI GCNNNNNNNGC 4 cut(s) 242, 431, 452, 464
HpyF3I CTNAG 2 cut(s) 303, 615
HpySE526I ACGT 3 cut(s) 48, 174, 550
Hsp92I GRCGYC 1 cut(s) 188
Hsp92II CATG 1 cut(s) 718
HspAI GCGC 1 cut(s) 188
KasI GGCGCC 1 cut(s) 187
Kpn2I TCCGGA 1 cut(s) 208
KpnI GGTACC 1 cut(s) 541
Kzo9I GATC 5 cut(s) 114, 346, 357, 391, 472
LguI GCTCTTC 2 cut(s) 102, 635
LmnI GCTCC 1 cut(s) 298
LpnPI CCDG 7 cut(s) 222, 390, 453, 489, 498, 740, 748
Lsp1109I GCAGC 4 cut(s) 82, 412, 442, 445
LweI GCATC 2 cut(s) 133, 442
MaeI CTAG 2 cut(s) 102, 132
MaeII ACGT 3 cut(s) 48, 174, 550
MaeIII GTNAC 3 cut(s) 8, 170, 551
MalI GATC 5 cut(s) 116, 348, 359, 393, 474
MboI GATC 5 cut(s) 114, 346, 357, 391, 472
MhlI GDGCHC 1 cut(s) 709
Mly113I GGCGCC 1 cut(s) 188
MroI TCCGGA 1 cut(s) 208
MroXI GAANNNNTTC 1 cut(s) 165
MseI TTAA 3 cut(s) 258, 318, 647
MspI CCGG 3 cut(s) 209, 735, 748
MspR9I CCNGG 1 cut(s) 748
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 4 cut(s) 242, 431, 452, 464
NarI GGCGCC 1 cut(s) 188
NciI CCSGG 1 cut(s) 748
NdeII GATC 5 cut(s) 114, 346, 357, 391, 472
NlaIII CATG 1 cut(s) 718
NlaIV GGNNCC 3 cut(s) 189, 300, 539
NmuCI GTSAC 1 cut(s) 8
NspV TTCGAA 1 cut(s) 327
PagI TCATGA 1 cut(s) 714
PciSI GCTCTTC 2 cut(s) 102, 635
PcsI WCGNNNNNNNCGW 1 cut(s) 175
PdmI GAANNNNTTC 1 cut(s) 165
PfeI GAWTC 2 cut(s) 149, 290
PfoI TCCNGGA 1 cut(s) 746
PkrI GCNGC 8 cut(s) 97, 100, 247, 250, 424, 427, 457, 460
PluTI GGCGCC 1 cut(s) 191
PshBI ATTAAT 1 cut(s) 318
Psp1406I AACGTT 1 cut(s) 48
PspN4I GGNNCC 3 cut(s) 189, 300, 539
RsaI GTAC 1 cut(s) 539
RsaNI GTAC 1 cut(s) 538
SapI GCTCTTC 2 cut(s) 102, 635
SaqAI TTAA 3 cut(s) 258, 318, 647
SatI GCNGC 8 cut(s) 96, 99, 246, 249, 423, 426, 456, 459
Sau3AI GATC 5 cut(s) 114, 346, 357, 391, 472
ScrFI CCNGG 1 cut(s) 748
SduI GDGCHC 1 cut(s) 709
SfaNI GCATC 2 cut(s) 133, 442
SfoI GGCGCC 1 cut(s) 189
SfuI TTCGAA 1 cut(s) 327
SmlI CTYRAG 1 cut(s) 542
SmoI CTYRAG 1 cut(s) 542
SsiI CCGC 7 cut(s) 99, 236, 245, 248, 380, 422, 754
SspDI GGCGCC 1 cut(s) 187
SspI AATATT 1 cut(s) 25
SspMI CTAG 2 cut(s) 102, 132
StyD4I CCNGG 1 cut(s) 746
StyI CCWWGG 1 cut(s) 533
TaaI ACNGT 1 cut(s) 14
TaiI ACGT 3 cut(s) 51, 177, 553
TaqI TCGA 6 cut(s) 60, 67, 159, 263, 327, 574
TauI GCSGC 4 cut(s) 101, 248, 251, 425
TfiI GAWTC 2 cut(s) 149, 290
Tru1I TTAA 3 cut(s) 258, 318, 647
Tru9I TTAA 3 cut(s) 258, 318, 647
TseFI GTSAC 1 cut(s) 8
TseI GCWGC 4 cut(s) 95, 425, 455, 458
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 5 cut(s) 246, 573, 624, 703, 731
TspGWI ACGGA 1 cut(s) 167
VspI ATTAAT 1 cut(s) 318
XcmI CCANNNNNNNNNTGG 2 cut(s) 39, 734
XmnI GAANNNNTTC 1 cut(s) 165
XspI CTAG 2 cut(s) 102, 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.