Rh7DG209500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0015036
Physical Location & Seq
Forward (+)
19999969 .. 20002746
2778 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG209500.1

Sequence Viewer

Length: 720 bp
ATGGGTGGTCATGGAGGTCTGAATATATTGCCTCAGAAGCGGTGGAATGTGTACAACTTTGATAATAGAGAGAAGGTTCGGCTGGATGAAGAAGCCGCCGCCAAAGAAGAGCAGCTCAAGCGGGAACAGGCCAGGCGGAGAGACACCGAGTATCGAATTGAGCAGCTCCGGGTGGCCCGTGGATTGGCCCCATTGATCCAACCCAAGGAGTCTGCTGAAGAGGAATCAAAGCCGGGCCCCTCTGCTGAAGTGGAGTCGAAGCCTGGTCACATTAACCTCTTTGAAGGGATTAAGATTTTCGACCCTATCAAGGGGTTGGAGAAGGAGGGAAGTGATGGGAAAGATGGGTTTAAGAAGAATAAGAAGATGAAGAAGGAGGAGCCGCCCAGGGTTGTGACAGCAGAGGATGAGAAGTATAGGTTGGGATATGGAGTTGCTGGGAAAGGAGTTAAGTTGCCGTGGTACCTTGAGAGGCTGAATGCTGATGCAAAGGGTGAGAGCGGCGAGGATGATGAATCGTCGACAGGGGTTAAGGAAGAGAAGAACAACAAAAGTGGGAAGAAGACAATAGAAGAGCTGAGGGAAGAGCGGTTGAGAAGGGAGAAGAGAGAGAAGGAAAGGGTGCGCACTTTGATTTTGAACAAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCGAAGGGATGGAGCTGATTTTAAGGATAGAAGGTTCACTAGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cir_N

Protein Analysis

239

Amino Acids

27.56

Weight (kDa)

9.47

Isoelectric Point (pI)

72.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16535
fragaria_vesca FvH4_5g18710 FvH4_5g18710 FvH4_5g18710
malus_domestica MD04G1088600.v1.1
prunus_persica Prupe.5G071300_v2.0.a1
pyrus_communis pycom976g00180
rosa_chinensis RchiOBHm_Chr7g0203001
rosa_laevigata RLG00000003558
rosa_multiflora Rmu_sc0013377.1_g000001
rosa_roxburghii Rroxscaffold_3G00254110
rosa_rugosa Rorug07G0074100
rosa_samantha Rh7AG202400 Rh7BG202500 Rh7DG209500
rosa_wichuraiana Rw7G017700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 626
Acc65I GGTACC 1 cut(s) 462
AccB1I GGYRCC 1 cut(s) 462
AccBSI CCGCTC 2 cut(s) 501, 589
AccI GTMKAC 1 cut(s) 521
AciI CCGC 8 cut(s) 40, 96, 99, 121, 136, 383, 501, 589
AclWI GGATC 1 cut(s) 190
AcuI CTGAAG 2 cut(s) 237, 267
AfaI GTAC 2 cut(s) 53, 464
AfiI CCNNNNNNNGG 4 cut(s) 184, 205, 310, 311
AgsI TTSAA 2 cut(s) 284, 640
AjnI CCWGG 3 cut(s) 131, 262, 386
AjuI GAANNNNNNNTTGG 2 cut(s) 404, 436
AloI GAACNNNNNNTCC 1 cut(s) 689
AluBI AGCT 4 cut(s) 115, 166, 577, 686
AluI AGCT 4 cut(s) 115, 166, 577, 686
Alw26I GTCTC 1 cut(s) 135
AlwI GGATC 1 cut(s) 190
AoxI GGCC 4 cut(s) 129, 174, 186, 235
ApaI GGGCCC 1 cut(s) 239
ApeKI GCWGC 2 cut(s) 112, 163
Asp718I GGTACC 1 cut(s) 462
AspLEI GCGC 1 cut(s) 627
AspS9I GGNCC 4 cut(s) 175, 187, 235, 236
AsuC2I CCSGG 2 cut(s) 170, 234
AsuHPI GGTGA 1 cut(s) 506
BaeGI GKGCMC 1 cut(s) 239
BanI GGYRCC 1 cut(s) 462
BanII GRGCYC 1 cut(s) 239
BbsI GAAGAC 1 cut(s) 569
BbvCI CCTCAGC 1 cut(s) 578
BbvI GCAGC 2 cut(s) 124, 175
BccI CCATC 3 cut(s) 329, 338, 674
BceAI ACGGC 1 cut(s) 442
BciT130I CCWGG 3 cut(s) 133, 264, 388
BcnI CCSGG 2 cut(s) 170, 234
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 1 cut(s) 711
BisI GCNGC 6 cut(s) 96, 99, 113, 164, 383, 502
BlsI GCNGC 6 cut(s) 97, 100, 114, 165, 384, 503
Bme1390I CCNGG 5 cut(s) 133, 170, 234, 264, 388
BmgT120I GGNCC 4 cut(s) 175, 187, 235, 236
BmiI GGNNCC 5 cut(s) 189, 237, 238, 381, 464
BmrFI CCNGG 5 cut(s) 133, 170, 234, 264, 388
BmsI GCATC 1 cut(s) 475
BpiI GAAGAC 1 cut(s) 569
Bpu10I CCTNAGC 1 cut(s) 578
BpuEI CTTGAG 2 cut(s) 101, 488
BpuMI CCSGG 2 cut(s) 170, 234
BsaJI CCNNGG 5 cut(s) 178, 204, 386, 387, 458
Bsc4I CCNNNNNNNGG 4 cut(s) 184, 205, 310, 311
BseBI CCWGG 3 cut(s) 133, 264, 388
BseDI CCNNGG 5 cut(s) 178, 204, 386, 387, 458
BseGI GGATG 4 cut(s) 91, 412, 514, 685
BseLI CCNNNNNNNGG 4 cut(s) 184, 205, 310, 311
BseMII CTCAG 2 cut(s) 47, 569
BseRI GAGGAG 1 cut(s) 392
BseSI GKGCMC 1 cut(s) 239
BseXI GCAGC 2 cut(s) 124, 175
BseYI CCCAGC 1 cut(s) 437
BshFI GGCC 4 cut(s) 131, 176, 188, 237
BshNI GGYRCC 1 cut(s) 462
BsiSI CCGG 2 cut(s) 169, 233
BslI CCNNNNNNNGG 4 cut(s) 184, 205, 310, 311
BsmAI GTCTC 1 cut(s) 135
BsmI GAATGC 1 cut(s) 484
BsnI GGCC 4 cut(s) 131, 176, 188, 237
Bsp120I GGGCCC 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 239
Bsp1407I TGTACA 1 cut(s) 51
Bsp143I GATC 1 cut(s) 195
BspACI CCGC 8 cut(s) 40, 96, 99, 121, 136, 383, 501, 589
BspANI GGCC 4 cut(s) 131, 176, 188, 237
BspCNI CTCAG 2 cut(s) 46, 570
BspLI GGNNCC 5 cut(s) 189, 237, 238, 381, 464
BspPI GGATC 1 cut(s) 190
BspQI GCTCTTC 3 cut(s) 102, 567, 579
BspT107I GGYRCC 1 cut(s) 462
BsrBI CCGCTC 2 cut(s) 501, 589
BsrGI TGTACA 1 cut(s) 51
BssECI CCNNGG 5 cut(s) 178, 204, 386, 387, 458
BssMI GATC 1 cut(s) 195
BssT1I CCWWGG 1 cut(s) 204
Bst2UI CCWGG 3 cut(s) 133, 264, 388
Bst6I CTCTTC 6 cut(s) 102, 213, 531, 567, 579, 599
BstAUI TGTACA 1 cut(s) 51
BstDEI CTNAG 2 cut(s) 33, 578
BstDSI CCRYGG 2 cut(s) 178, 458
BstF5I GGATG 4 cut(s) 91, 412, 514, 685
BstHHI GCGC 1 cut(s) 627
BstKTI GATC 1 cut(s) 198
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 1 cut(s) 195
BstMWI GCNNNNNNNGC 2 cut(s) 37, 118
BstNI CCWGG 3 cut(s) 133, 264, 388
BstSCI CCNGG 5 cut(s) 131, 168, 232, 262, 386
BstSLI GKGCMC 1 cut(s) 239
BstV1I GCAGC 2 cut(s) 124, 175
BstV2I GAAGAC 1 cut(s) 569
BsuRI GGCC 4 cut(s) 131, 176, 188, 237
BtgI CCRYGG 2 cut(s) 178, 458
BtsCI GGATG 4 cut(s) 91, 412, 514, 685
CfoI GCGC 1 cut(s) 627
Cfr13I GGNCC 4 cut(s) 175, 187, 235, 236
Csp6I GTAC 2 cut(s) 52, 463
CspCI CAANNNNNGTGG 2 cut(s) 535, 570
CviAII CATG 1 cut(s) 11
CviQI GTAC 2 cut(s) 52, 463
DdeI CTNAG 2 cut(s) 33, 578
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
Eam1104I CTCTTC 6 cut(s) 102, 213, 531, 567, 579, 599
EarI CTCTTC 6 cut(s) 102, 213, 531, 567, 579, 599
EciI GGCGGA 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 204
Eco24I GRGCYC 1 cut(s) 239
Eco57I CTGAAG 2 cut(s) 237, 267
EcoO109I RGGNCCY 1 cut(s) 236
EcoRII CCWGG 3 cut(s) 131, 262, 386
EcoT14I CCWWGG 1 cut(s) 204
EcoT38I GRGCYC 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 1 cut(s) 14
FaiI YATR 4 cut(s) 12, 26, 417, 429
FatI CATG 1 cut(s) 10
FauI CCCGC 1 cut(s) 114
FblI GTMKAC 1 cut(s) 521
Fnu4HI GCNGC 6 cut(s) 96, 99, 113, 164, 383, 502
FokI GGATG 4 cut(s) 98, 419, 521, 692
FriOI GRGCYC 1 cut(s) 239
Fsp4HI GCNGC 6 cut(s) 96, 99, 113, 164, 383, 502
FspAI RTGCGCAY 1 cut(s) 626
FspBI CTAG 1 cut(s) 711
FspI TGCGCA 1 cut(s) 626
GlaI GCGC 1 cut(s) 626
GluI GCNGC 6 cut(s) 96, 99, 113, 164, 383, 502
GsaI CCCAGC 1 cut(s) 441
HaeIII GGCC 4 cut(s) 131, 176, 188, 237
HapII CCGG 2 cut(s) 169, 233
HhaI GCGC 1 cut(s) 627
Hin1II CATG 1 cut(s) 14
Hin6I GCGC 1 cut(s) 625
HinP1I GCGC 1 cut(s) 625
HincII GTYRAC 1 cut(s) 522
HindII GTYRAC 1 cut(s) 522
HinfI GANTC 4 cut(s) 209, 224, 254, 515
HpaII CCGG 2 cut(s) 169, 233
HphI GGTGA 1 cut(s) 506
Hpy166II GTNNAC 3 cut(s) 52, 522, 708
Hpy188I TCNGA 2 cut(s) 21, 36
Hpy8I GTNNAC 3 cut(s) 52, 522, 708
Hpy99I CGWCG 1 cut(s) 523
HpyAV CCTTC 8 cut(s) 67, 278, 316, 367, 591, 607, 669, 696
HpyCH4V TGCA 1 cut(s) 488
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 118
HpyF3I CTNAG 2 cut(s) 33, 578
Hsp92II CATG 1 cut(s) 14
HspAI GCGC 1 cut(s) 625
KpnI GGTACC 1 cut(s) 466
Kzo9I GATC 1 cut(s) 195
LguI GCTCTTC 3 cut(s) 102, 567, 579
LmnI GCTCC 3 cut(s) 171, 379, 683
Lsp1109I GCAGC 2 cut(s) 124, 175
LweI GCATC 1 cut(s) 475
MaeI CTAG 1 cut(s) 711
MaeIII GTNAC 2 cut(s) 266, 394
MalI GATC 1 cut(s) 197
MbiI CCGCTC 2 cut(s) 501, 589
MboI GATC 1 cut(s) 195
MhlI GDGCHC 1 cut(s) 239
MluCI AATT 1 cut(s) 156
MlyI GAGTC 2 cut(s) 218, 263
MmeI TCCRAC 2 cut(s) 223, 297
MseI TTAA 6 cut(s) 273, 291, 351, 450, 531, 693
MspI CCGG 2 cut(s) 169, 233
MspR9I CCNGG 5 cut(s) 133, 170, 234, 264, 388
Mva1269I GAATGC 1 cut(s) 484
MvaI CCWGG 3 cut(s) 133, 264, 388
MwoI GCNNNNNNNGC 2 cut(s) 37, 118
NciI CCSGG 2 cut(s) 170, 234
NdeII GATC 1 cut(s) 195
NlaIII CATG 1 cut(s) 14
NlaIV GGNNCC 5 cut(s) 189, 237, 238, 381, 464
NmuCI GTSAC 2 cut(s) 266, 394
NsbI TGCGCA 1 cut(s) 626
PasI CCCWGGG 1 cut(s) 387
PciSI GCTCTTC 3 cut(s) 102, 567, 579
PctI GAATGC 1 cut(s) 484
PfeI GAWTC 2 cut(s) 224, 515
PkrI GCNGC 6 cut(s) 97, 100, 114, 165, 384, 503
PleI GAGTC 2 cut(s) 217, 262
PpsI GAGTC 2 cut(s) 217, 262
Psp6I CCWGG 3 cut(s) 131, 262, 386
PspFI CCCAGC 1 cut(s) 437
PspGI CCWGG 3 cut(s) 131, 262, 386
PspN4I GGNNCC 5 cut(s) 189, 237, 238, 381, 464
PspOMI GGGCCC 1 cut(s) 235
PspPI GGNCC 4 cut(s) 175, 187, 235, 236
RsaI GTAC 2 cut(s) 53, 464
RsaNI GTAC 2 cut(s) 52, 463
SalI GTCGAC 1 cut(s) 520
SapI GCTCTTC 3 cut(s) 102, 567, 579
SaqAI TTAA 6 cut(s) 273, 291, 351, 450, 531, 693
SatI GCNGC 6 cut(s) 96, 99, 113, 164, 383, 502
Sau3AI GATC 1 cut(s) 195
Sau96I GGNCC 4 cut(s) 175, 187, 235, 236
SchI GAGTC 2 cut(s) 218, 263
ScrFI CCNGG 5 cut(s) 133, 170, 234, 264, 388
SduI GDGCHC 1 cut(s) 239
SfaNI GCATC 1 cut(s) 475
SmlI CTYRAG 2 cut(s) 116, 467
SmoI CTYRAG 2 cut(s) 116, 467
Sse9I AATT 1 cut(s) 156
SsiI CCGC 8 cut(s) 40, 96, 99, 121, 136, 383, 501, 589
SspMI CTAG 1 cut(s) 711
StyD4I CCNGG 5 cut(s) 131, 168, 232, 262, 386
StyI CCWWGG 1 cut(s) 204
TaqI TCGA 4 cut(s) 154, 257, 300, 521
TasI AATT 1 cut(s) 156
TatI WGTACW 1 cut(s) 51
TauI GCSGC 4 cut(s) 98, 101, 385, 504
TfiI GAWTC 2 cut(s) 224, 515
Tru1I TTAA 6 cut(s) 273, 291, 351, 450, 531, 693
Tru9I TTAA 6 cut(s) 273, 291, 351, 450, 531, 693
TseFI GTSAC 2 cut(s) 266, 394
TseI GCWGC 2 cut(s) 112, 163
Tsp45I GTSAC 2 cut(s) 266, 394
TspDTI ATGAA 3 cut(s) 102, 383, 528
XmiI GTMKAC 1 cut(s) 521
XspI CTAG 1 cut(s) 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.