Rh7BG202500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0015036
Physical Location & Seq
Forward (+)
16864557 .. 16866044
1488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG202500.1

Sequence Viewer

Length: 699 bp
ATGGGTGGTCATGGAGGTCTGAATATATTGCCTCAGAAGCGGTGGAATGTGTACAACTTTGATAATAGAGAGAAGGTTCGGCTGGATGAAGAAGCCGCCGCCAAAGAAGAGCAGATCAAACGTGAACAGGCCAGGCGGAGAGACACCGAGTACCGAATTGAGCAGCTTCGGGTTGCCCGTGGATTGGCTCCATTGATCCAACCCGAGGAGTCTGCTGAAGAGGAATCGAAGCCGGGTCACTCTGCTGAAGTGGAGTCCAAGCCTGGTCACATTAACCTCTTTGAAGGGATTAAGATTTTCGACCCTATCAAGGGGTTGGAGAAGGAGGGAAGTGATGGGTTTAAGAAGAATAAGAAGATGAAGAAGGAGGAGCCGCCCAGGGTTGTGACAGCAGAGGATGAGAAGTATAGGTTGGGATATGGAGTTGCTGGGAAAGGAGTGAAGTTGCCGTGGTACCTTGAGAGGCTTAATGCGGATGCAAATGGTGAGAGCGGCGAGGATGATGAATCGTCGACAGGGGTTAAGGAAGAGAAGAAGAACAAAAGTGGGAAGAAGACGATAGAAGAGCTGAGGGAAGAGCGATTGAGAAGGGAGAAGAGAGAGAAGGAGAGGGTGCGCACTTTGATTCTCAACAAGAGCCAGAGCCAGAGTCGAAGGGATGGAGCTGATTTTAAGGATAGAAGATTCACTAGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cir_N

Protein Analysis

232

Amino Acids

26.87

Weight (kDa)

9.34

Isoelectric Point (pI)

70.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16535
fragaria_vesca FvH4_5g18710 FvH4_5g18710 FvH4_5g18710
malus_domestica MD04G1088600.v1.1
prunus_persica Prupe.5G071300_v2.0.a1
pyrus_communis pycom976g00180
rosa_chinensis RchiOBHm_Chr7g0203001
rosa_laevigata RLG00000003558
rosa_multiflora Rmu_sc0013377.1_g000001
rosa_roxburghii Rroxscaffold_3G00254110
rosa_rugosa Rorug07G0074100
rosa_samantha Rh7AG202400 Rh7BG202500 Rh7DG209500
rosa_wichuraiana Rw7G017700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 617
Acc65I GGTACC 1 cut(s) 453
AccB1I GGYRCC 1 cut(s) 453
AccBSI CCGCTC 1 cut(s) 492
AccI GTMKAC 1 cut(s) 512
AciI CCGC 7 cut(s) 40, 96, 99, 136, 374, 473, 492
AclWI GGATC 1 cut(s) 190
AcuI CTGAAG 2 cut(s) 237, 267
AfaI GTAC 3 cut(s) 53, 152, 455
AfiI CCNNNNNNNGG 4 cut(s) 184, 205, 310, 311
AgsI TTSAA 1 cut(s) 284
AjnI CCWGG 3 cut(s) 131, 262, 377
AjuI GAANNNNNNNTTGG 2 cut(s) 395, 427
AluBI AGCT 3 cut(s) 166, 568, 665
AluI AGCT 3 cut(s) 166, 568, 665
Alw26I GTCTC 1 cut(s) 135
AlwI GGATC 1 cut(s) 190
Ama87I CYCGRG 1 cut(s) 203
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 163
Asp718I GGTACC 1 cut(s) 453
AspLEI GCGC 1 cut(s) 618
AsuC2I CCSGG 1 cut(s) 234
AsuHPI GGTGA 1 cut(s) 497
AvaI CYCGRG 1 cut(s) 203
BanI GGYRCC 1 cut(s) 453
BbsI GAAGAC 1 cut(s) 560
BbvCI CCTCAGC 1 cut(s) 569
BbvI GCAGC 1 cut(s) 175
BccI CCATC 2 cut(s) 329, 653
BceAI ACGGC 1 cut(s) 433
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BciT130I CCWGG 3 cut(s) 133, 264, 379
BcnI CCSGG 1 cut(s) 234
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 1 cut(s) 690
BisI GCNGC 5 cut(s) 96, 99, 164, 374, 493
BlsI GCNGC 5 cut(s) 97, 100, 165, 375, 494
Bme1390I CCNGG 4 cut(s) 133, 234, 264, 379
BmeT110I CYCGRG 1 cut(s) 203
BmiI GGNNCC 3 cut(s) 189, 372, 455
BmrFI CCNGG 4 cut(s) 133, 234, 264, 379
BmsI GCATC 1 cut(s) 466
BpiI GAAGAC 1 cut(s) 560
Bpu10I CCTNAGC 1 cut(s) 569
BpuEI CTTGAG 1 cut(s) 479
BpuMI CCSGG 1 cut(s) 234
BsaJI CCNNGG 5 cut(s) 178, 204, 377, 378, 449
Bsc4I CCNNNNNNNGG 4 cut(s) 184, 205, 310, 311
BseBI CCWGG 3 cut(s) 133, 264, 379
BseDI CCNNGG 5 cut(s) 178, 204, 377, 378, 449
BseGI GGATG 5 cut(s) 91, 403, 481, 505, 664
BseLI CCNNNNNNNGG 4 cut(s) 184, 205, 310, 311
BseMII CTCAG 2 cut(s) 47, 560
BseRI GAGGAG 2 cut(s) 221, 383
BseXI GCAGC 1 cut(s) 175
BseYI CCCAGC 1 cut(s) 428
BshFI GGCC 1 cut(s) 131
BshNI GGYRCC 1 cut(s) 453
BsiHKCI CYCGRG 1 cut(s) 203
BsiSI CCGG 1 cut(s) 233
BslI CCNNNNNNNGG 4 cut(s) 184, 205, 310, 311
BsmAI GTCTC 1 cut(s) 135
BsnI GGCC 1 cut(s) 131
BsoBI CYCGRG 1 cut(s) 203
Bsp1407I TGTACA 1 cut(s) 51
Bsp143I GATC 2 cut(s) 114, 195
BspACI CCGC 7 cut(s) 40, 96, 99, 136, 374, 473, 492
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 2 cut(s) 46, 561
BspLI GGNNCC 3 cut(s) 189, 372, 455
BspPI GGATC 1 cut(s) 190
BspQI GCTCTTC 3 cut(s) 102, 558, 570
BspT107I GGYRCC 1 cut(s) 453
BsrBI CCGCTC 1 cut(s) 492
BsrGI TGTACA 1 cut(s) 51
BssECI CCNNGG 5 cut(s) 178, 204, 377, 378, 449
BssMI GATC 2 cut(s) 114, 195
Bst2UI CCWGG 3 cut(s) 133, 264, 379
Bst6I CTCTTC 6 cut(s) 102, 213, 522, 558, 570, 590
BstAUI TGTACA 1 cut(s) 51
BstDEI CTNAG 2 cut(s) 33, 569
BstDSI CCRYGG 2 cut(s) 178, 449
BstF5I GGATG 5 cut(s) 91, 403, 481, 505, 664
BstHHI GCGC 1 cut(s) 618
BstKTI GATC 2 cut(s) 117, 198
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 2 cut(s) 114, 195
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNI CCWGG 3 cut(s) 133, 264, 379
BstSCI CCNGG 4 cut(s) 131, 232, 262, 377
BstV1I GCAGC 1 cut(s) 175
BstV2I GAAGAC 1 cut(s) 560
BsuRI GGCC 1 cut(s) 131
BtgI CCRYGG 2 cut(s) 178, 449
BtsCI GGATG 5 cut(s) 91, 403, 481, 505, 664
CfoI GCGC 1 cut(s) 618
Csp6I GTAC 3 cut(s) 52, 151, 454
CviAII CATG 1 cut(s) 11
CviQI GTAC 3 cut(s) 52, 151, 454
DdeI CTNAG 2 cut(s) 33, 569
DpnI GATC 2 cut(s) 116, 197
DpnII GATC 2 cut(s) 114, 195
Eam1104I CTCTTC 6 cut(s) 102, 213, 522, 558, 570, 590
EarI CTCTTC 6 cut(s) 102, 213, 522, 558, 570, 590
EciI GGCGGA 1 cut(s) 151
Eco57I CTGAAG 2 cut(s) 237, 267
Eco88I CYCGRG 1 cut(s) 203
EcoRII CCWGG 3 cut(s) 131, 262, 377
FaeI CATG 1 cut(s) 14
FaiI YATR 4 cut(s) 12, 26, 408, 420
FatI CATG 1 cut(s) 10
FblI GTMKAC 1 cut(s) 512
Fnu4HI GCNGC 5 cut(s) 96, 99, 164, 374, 493
FokI GGATG 5 cut(s) 98, 410, 488, 512, 671
Fsp4HI GCNGC 5 cut(s) 96, 99, 164, 374, 493
FspAI RTGCGCAY 1 cut(s) 617
FspBI CTAG 1 cut(s) 690
FspI TGCGCA 1 cut(s) 617
GlaI GCGC 1 cut(s) 617
GluI GCNGC 5 cut(s) 96, 99, 164, 374, 493
GsaI CCCAGC 1 cut(s) 432
HaeIII GGCC 1 cut(s) 131
HapII CCGG 1 cut(s) 233
HhaI GCGC 1 cut(s) 618
Hin1II CATG 1 cut(s) 14
Hin6I GCGC 1 cut(s) 616
HinP1I GCGC 1 cut(s) 616
HincII GTYRAC 1 cut(s) 513
HindII GTYRAC 1 cut(s) 513
HinfI GANTC 7 cut(s) 209, 224, 254, 506, 625, 649, 684
HpaII CCGG 1 cut(s) 233
HphI GGTGA 1 cut(s) 497
Hpy166II GTNNAC 3 cut(s) 52, 125, 513
Hpy188I TCNGA 2 cut(s) 21, 36
Hpy8I GTNNAC 3 cut(s) 52, 125, 513
Hpy99I CGWCG 1 cut(s) 514
HpyAV CCTTC 7 cut(s) 67, 278, 316, 358, 582, 598, 648
HpyCH4IV ACGT 1 cut(s) 121
HpyCH4V TGCA 1 cut(s) 479
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 2 cut(s) 33, 569
HpySE526I ACGT 1 cut(s) 121
Hsp92II CATG 1 cut(s) 14
HspAI GCGC 1 cut(s) 616
KpnI GGTACC 1 cut(s) 457
Kzo9I GATC 2 cut(s) 114, 195
LguI GCTCTTC 3 cut(s) 102, 558, 570
LmnI GCTCC 3 cut(s) 193, 370, 662
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 1 cut(s) 466
MaeI CTAG 1 cut(s) 690
MaeII ACGT 1 cut(s) 121
MaeIII GTNAC 3 cut(s) 236, 266, 385
MalI GATC 2 cut(s) 116, 197
MbiI CCGCTC 1 cut(s) 492
MboI GATC 2 cut(s) 114, 195
MluCI AATT 1 cut(s) 156
MlyI GAGTC 3 cut(s) 218, 263, 658
MmeI TCCRAC 2 cut(s) 223, 297
MseI TTAA 6 cut(s) 273, 291, 342, 468, 522, 672
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 4 cut(s) 133, 234, 264, 379
MvaI CCWGG 3 cut(s) 133, 264, 379
MwoI GCNNNNNNNGC 1 cut(s) 37
NciI CCSGG 1 cut(s) 234
NdeII GATC 2 cut(s) 114, 195
NlaIII CATG 1 cut(s) 14
NlaIV GGNNCC 3 cut(s) 189, 372, 455
NmuCI GTSAC 3 cut(s) 236, 266, 385
NsbI TGCGCA 1 cut(s) 617
PasI CCCWGGG 1 cut(s) 378
PciSI GCTCTTC 3 cut(s) 102, 558, 570
PcsI WCGNNNNNNNCGW 1 cut(s) 175
PfeI GAWTC 4 cut(s) 224, 506, 625, 684
PkrI GCNGC 5 cut(s) 97, 100, 165, 375, 494
PleI GAGTC 3 cut(s) 217, 262, 657
PpsI GAGTC 3 cut(s) 217, 262, 657
Psp6I CCWGG 3 cut(s) 131, 262, 377
PspFI CCCAGC 1 cut(s) 428
PspGI CCWGG 3 cut(s) 131, 262, 377
PspN4I GGNNCC 3 cut(s) 189, 372, 455
RsaI GTAC 3 cut(s) 53, 152, 455
RsaNI GTAC 3 cut(s) 52, 151, 454
SalI GTCGAC 1 cut(s) 511
SapI GCTCTTC 3 cut(s) 102, 558, 570
SaqAI TTAA 6 cut(s) 273, 291, 342, 468, 522, 672
SatI GCNGC 5 cut(s) 96, 99, 164, 374, 493
Sau3AI GATC 2 cut(s) 114, 195
SchI GAGTC 3 cut(s) 218, 263, 658
ScrFI CCNGG 4 cut(s) 133, 234, 264, 379
SfaNI GCATC 1 cut(s) 466
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
Sse9I AATT 1 cut(s) 156
SsiI CCGC 7 cut(s) 40, 96, 99, 136, 374, 473, 492
SspMI CTAG 1 cut(s) 690
StyD4I CCNGG 4 cut(s) 131, 232, 262, 377
TaiI ACGT 1 cut(s) 124
TaqI TCGA 4 cut(s) 227, 300, 512, 652
TasI AATT 1 cut(s) 156
TatI WGTACW 1 cut(s) 51
TauI GCSGC 4 cut(s) 98, 101, 376, 495
TfiI GAWTC 4 cut(s) 224, 506, 625, 684
Tru1I TTAA 6 cut(s) 273, 291, 342, 468, 522, 672
Tru9I TTAA 6 cut(s) 273, 291, 342, 468, 522, 672
TseFI GTSAC 3 cut(s) 236, 266, 385
TseI GCWGC 1 cut(s) 163
Tsp45I GTSAC 3 cut(s) 236, 266, 385
TspDTI ATGAA 3 cut(s) 102, 374, 519
XmiI GTMKAC 1 cut(s) 512
XspI CTAG 1 cut(s) 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.