RchiOBHm_Chr7g0203001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0015036
Physical Location & Seq
Forward (+)
20647648 .. 20650304
2657 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18168

Sequence Viewer

Length: 723 bp
ATGGGTGGTCATGGAGGTCTGAATATATTGCCTCAGAAGCGGTGGAATGTGTACAACTTTGATAATAGAGAGAAGGTTCGGCTGGATGAAGAAGCCGCCGCCAAAGAAGAGCAGCTCAAGCGGGAACAGGCCAGGCGGAGAGACACCGAGTATCGAATTGAGCAGCTCCGGGTGGCCCGTGGATTGGCCCCATTGATCCAACCCAAGGAGTCTGCTGAAGAGGAATCAAAGCCGGGCCCCTCTGCTGAAGTGGAGTCGAAGCCTGGTCACATTAACCTCTTTGAAGGGATTAAGATTTTCGACCCTATCAAGGGGTTGGAGAAGGAGGGAAGTGATGGGAAAGATGGGTTTAAGAAGAATAAGAAGATGAAGAAGGAGGAGCCGCCCAGGGTTGTGACAGCAGAGGATGAGAAGTATAGGTTGGGATATGGAGTTGCTGGGAAAGGAGTTAAGTTGCCGTGGTACCTTGAGAGGCTGAATGCTGATGCAAAGGGTGAGAGCGGCGAGGATGATGAATCGTCGACAGGGGTTAAGGAAGAGAAGAACAACAAAAGTGGGAAGAAGACAATAGAAGAGCTGAGGGAAGAGCGGTTGAGAAGGGAGAAGAGAGAGAAGGAAAGGGTGCGCACTTTGATTTTGAACAAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCGAAGGGATGGAGCTGATTTTAAGGATAGAAGGTTCACTAGGAGGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cir_N

Protein Analysis

240

Amino Acids

27.62

Weight (kDa)

9.47

Isoelectric Point (pI)

72.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16535
fragaria_vesca FvH4_5g18710 FvH4_5g18710 FvH4_5g18710
malus_domestica MD04G1088600.v1.1
prunus_persica Prupe.5G071300_v2.0.a1
pyrus_communis pycom976g00180
rosa_chinensis RchiOBHm_Chr7g0203001
rosa_laevigata RLG00000003558
rosa_multiflora Rmu_sc0013377.1_g000001
rosa_roxburghii Rroxscaffold_3G00254110
rosa_rugosa Rorug07G0074100
rosa_samantha Rh7AG202400 Rh7BG202500 Rh7DG209500
rosa_wichuraiana Rw7G017700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 626
Acc65I GGTACC 1 cut(s) 462
AccB1I GGYRCC 1 cut(s) 462
AccBSI CCGCTC 2 cut(s) 501, 589
AccI GTMKAC 1 cut(s) 521
AciI CCGC 8 cut(s) 40, 96, 99, 121, 136, 383, 501, 589
AclWI GGATC 1 cut(s) 190
AcuI CTGAAG 2 cut(s) 237, 267
AfaI GTAC 2 cut(s) 53, 464
AfiI CCNNNNNNNGG 4 cut(s) 184, 205, 310, 311
AgsI TTSAA 2 cut(s) 284, 640
AjnI CCWGG 3 cut(s) 131, 262, 386
AjuI GAANNNNNNNTTGG 2 cut(s) 404, 436
AloI GAACNNNNNNTCC 2 cut(s) 689, 721
AluBI AGCT 4 cut(s) 115, 166, 577, 686
AluI AGCT 4 cut(s) 115, 166, 577, 686
Alw26I GTCTC 1 cut(s) 135
AlwI GGATC 1 cut(s) 190
AoxI GGCC 4 cut(s) 129, 174, 186, 235
ApaI GGGCCC 1 cut(s) 239
ApeKI GCWGC 2 cut(s) 112, 163
Asp718I GGTACC 1 cut(s) 462
AspLEI GCGC 1 cut(s) 627
AspS9I GGNCC 4 cut(s) 175, 187, 235, 236
AsuC2I CCSGG 2 cut(s) 170, 234
AsuHPI GGTGA 1 cut(s) 506
BaeGI GKGCMC 1 cut(s) 239
BanI GGYRCC 1 cut(s) 462
BanII GRGCYC 1 cut(s) 239
BbsI GAAGAC 1 cut(s) 569
BbvCI CCTCAGC 1 cut(s) 578
BbvI GCAGC 2 cut(s) 124, 175
BccI CCATC 3 cut(s) 329, 338, 674
BceAI ACGGC 1 cut(s) 442
BciT130I CCWGG 3 cut(s) 133, 264, 388
BcnI CCSGG 2 cut(s) 170, 234
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 1 cut(s) 711
BisI GCNGC 6 cut(s) 96, 99, 113, 164, 383, 502
BlsI GCNGC 6 cut(s) 97, 100, 114, 165, 384, 503
Bme1390I CCNGG 5 cut(s) 133, 170, 234, 264, 388
BmgT120I GGNCC 4 cut(s) 175, 187, 235, 236
BmiI GGNNCC 5 cut(s) 189, 237, 238, 381, 464
BmrFI CCNGG 5 cut(s) 133, 170, 234, 264, 388
BmsI GCATC 1 cut(s) 475
BpiI GAAGAC 1 cut(s) 569
Bpu10I CCTNAGC 1 cut(s) 578
BpuEI CTTGAG 2 cut(s) 101, 488
BpuMI CCSGG 2 cut(s) 170, 234
BsaJI CCNNGG 5 cut(s) 178, 204, 386, 387, 458
Bsc4I CCNNNNNNNGG 4 cut(s) 184, 205, 310, 311
BseBI CCWGG 3 cut(s) 133, 264, 388
BseDI CCNNGG 5 cut(s) 178, 204, 386, 387, 458
BseGI GGATG 4 cut(s) 91, 412, 514, 685
BseLI CCNNNNNNNGG 4 cut(s) 184, 205, 310, 311
BseMII CTCAG 2 cut(s) 47, 569
BseRI GAGGAG 1 cut(s) 392
BseSI GKGCMC 1 cut(s) 239
BseXI GCAGC 2 cut(s) 124, 175
BseYI CCCAGC 1 cut(s) 437
BshFI GGCC 4 cut(s) 131, 176, 188, 237
BshNI GGYRCC 1 cut(s) 462
BsiSI CCGG 2 cut(s) 169, 233
BslI CCNNNNNNNGG 4 cut(s) 184, 205, 310, 311
BsmAI GTCTC 1 cut(s) 135
BsmI GAATGC 1 cut(s) 484
BsnI GGCC 4 cut(s) 131, 176, 188, 237
Bsp120I GGGCCC 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 239
Bsp1407I TGTACA 1 cut(s) 51
Bsp143I GATC 1 cut(s) 195
BspACI CCGC 8 cut(s) 40, 96, 99, 121, 136, 383, 501, 589
BspANI GGCC 4 cut(s) 131, 176, 188, 237
BspCNI CTCAG 2 cut(s) 46, 570
BspLI GGNNCC 5 cut(s) 189, 237, 238, 381, 464
BspPI GGATC 1 cut(s) 190
BspQI GCTCTTC 3 cut(s) 102, 567, 579
BspT107I GGYRCC 1 cut(s) 462
BsrBI CCGCTC 2 cut(s) 501, 589
BsrGI TGTACA 1 cut(s) 51
BssECI CCNNGG 5 cut(s) 178, 204, 386, 387, 458
BssMI GATC 1 cut(s) 195
BssT1I CCWWGG 1 cut(s) 204
Bst2UI CCWGG 3 cut(s) 133, 264, 388
Bst6I CTCTTC 6 cut(s) 102, 213, 531, 567, 579, 599
BstAUI TGTACA 1 cut(s) 51
BstDEI CTNAG 2 cut(s) 33, 578
BstDSI CCRYGG 2 cut(s) 178, 458
BstF5I GGATG 4 cut(s) 91, 412, 514, 685
BstHHI GCGC 1 cut(s) 627
BstKTI GATC 1 cut(s) 198
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 1 cut(s) 195
BstMWI GCNNNNNNNGC 2 cut(s) 37, 118
BstNI CCWGG 3 cut(s) 133, 264, 388
BstSCI CCNGG 5 cut(s) 131, 168, 232, 262, 386
BstSLI GKGCMC 1 cut(s) 239
BstV1I GCAGC 2 cut(s) 124, 175
BstV2I GAAGAC 1 cut(s) 569
BsuRI GGCC 4 cut(s) 131, 176, 188, 237
BtgI CCRYGG 2 cut(s) 178, 458
BtsCI GGATG 4 cut(s) 91, 412, 514, 685
CfoI GCGC 1 cut(s) 627
Cfr13I GGNCC 4 cut(s) 175, 187, 235, 236
Csp6I GTAC 2 cut(s) 52, 463
CspCI CAANNNNNGTGG 2 cut(s) 535, 570
CviAII CATG 1 cut(s) 11
CviQI GTAC 2 cut(s) 52, 463
DdeI CTNAG 2 cut(s) 33, 578
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
Eam1104I CTCTTC 6 cut(s) 102, 213, 531, 567, 579, 599
EarI CTCTTC 6 cut(s) 102, 213, 531, 567, 579, 599
EciI GGCGGA 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 204
Eco24I GRGCYC 1 cut(s) 239
Eco57I CTGAAG 2 cut(s) 237, 267
EcoO109I RGGNCCY 1 cut(s) 236
EcoRII CCWGG 3 cut(s) 131, 262, 386
EcoT14I CCWWGG 1 cut(s) 204
EcoT38I GRGCYC 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 1 cut(s) 14
FaiI YATR 4 cut(s) 12, 26, 417, 429
FatI CATG 1 cut(s) 10
FauI CCCGC 1 cut(s) 114
FblI GTMKAC 1 cut(s) 521
Fnu4HI GCNGC 6 cut(s) 96, 99, 113, 164, 383, 502
FokI GGATG 4 cut(s) 98, 419, 521, 692
FriOI GRGCYC 1 cut(s) 239
Fsp4HI GCNGC 6 cut(s) 96, 99, 113, 164, 383, 502
FspAI RTGCGCAY 1 cut(s) 626
FspBI CTAG 1 cut(s) 711
FspI TGCGCA 1 cut(s) 626
GlaI GCGC 1 cut(s) 626
GluI GCNGC 6 cut(s) 96, 99, 113, 164, 383, 502
GsaI CCCAGC 1 cut(s) 441
HaeIII GGCC 4 cut(s) 131, 176, 188, 237
HapII CCGG 2 cut(s) 169, 233
HhaI GCGC 1 cut(s) 627
Hin1II CATG 1 cut(s) 14
Hin6I GCGC 1 cut(s) 625
HinP1I GCGC 1 cut(s) 625
HincII GTYRAC 1 cut(s) 522
HindII GTYRAC 1 cut(s) 522
HinfI GANTC 4 cut(s) 209, 224, 254, 515
HpaII CCGG 2 cut(s) 169, 233
HphI GGTGA 1 cut(s) 506
Hpy166II GTNNAC 3 cut(s) 52, 522, 708
Hpy188I TCNGA 2 cut(s) 21, 36
Hpy8I GTNNAC 3 cut(s) 52, 522, 708
Hpy99I CGWCG 1 cut(s) 523
HpyAV CCTTC 8 cut(s) 67, 278, 316, 367, 591, 607, 669, 696
HpyCH4V TGCA 1 cut(s) 488
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 118
HpyF3I CTNAG 2 cut(s) 33, 578
Hsp92II CATG 1 cut(s) 14
HspAI GCGC 1 cut(s) 625
KpnI GGTACC 1 cut(s) 466
Kzo9I GATC 1 cut(s) 195
LguI GCTCTTC 3 cut(s) 102, 567, 579
LmnI GCTCC 3 cut(s) 171, 379, 683
Lsp1109I GCAGC 2 cut(s) 124, 175
LweI GCATC 1 cut(s) 475
MaeI CTAG 1 cut(s) 711
MaeIII GTNAC 2 cut(s) 266, 394
MalI GATC 1 cut(s) 197
MbiI CCGCTC 2 cut(s) 501, 589
MboI GATC 1 cut(s) 195
MhlI GDGCHC 1 cut(s) 239
MluCI AATT 1 cut(s) 156
MlyI GAGTC 2 cut(s) 218, 263
MmeI TCCRAC 2 cut(s) 223, 297
MseI TTAA 6 cut(s) 273, 291, 351, 450, 531, 693
MspI CCGG 2 cut(s) 169, 233
MspR9I CCNGG 5 cut(s) 133, 170, 234, 264, 388
Mva1269I GAATGC 1 cut(s) 484
MvaI CCWGG 3 cut(s) 133, 264, 388
MwoI GCNNNNNNNGC 2 cut(s) 37, 118
NciI CCSGG 2 cut(s) 170, 234
NdeII GATC 1 cut(s) 195
NlaIII CATG 1 cut(s) 14
NlaIV GGNNCC 5 cut(s) 189, 237, 238, 381, 464
NmuCI GTSAC 2 cut(s) 266, 394
NsbI TGCGCA 1 cut(s) 626
PasI CCCWGGG 1 cut(s) 387
PciSI GCTCTTC 3 cut(s) 102, 567, 579
PctI GAATGC 1 cut(s) 484
PfeI GAWTC 2 cut(s) 224, 515
PkrI GCNGC 6 cut(s) 97, 100, 114, 165, 384, 503
PleI GAGTC 2 cut(s) 217, 262
PpsI GAGTC 2 cut(s) 217, 262
Psp6I CCWGG 3 cut(s) 131, 262, 386
PspFI CCCAGC 1 cut(s) 437
PspGI CCWGG 3 cut(s) 131, 262, 386
PspN4I GGNNCC 5 cut(s) 189, 237, 238, 381, 464
PspOMI GGGCCC 1 cut(s) 235
PspPI GGNCC 4 cut(s) 175, 187, 235, 236
RsaI GTAC 2 cut(s) 53, 464
RsaNI GTAC 2 cut(s) 52, 463
SalI GTCGAC 1 cut(s) 520
SapI GCTCTTC 3 cut(s) 102, 567, 579
SaqAI TTAA 6 cut(s) 273, 291, 351, 450, 531, 693
SatI GCNGC 6 cut(s) 96, 99, 113, 164, 383, 502
Sau3AI GATC 1 cut(s) 195
Sau96I GGNCC 4 cut(s) 175, 187, 235, 236
SchI GAGTC 2 cut(s) 218, 263
ScrFI CCNGG 5 cut(s) 133, 170, 234, 264, 388
SduI GDGCHC 1 cut(s) 239
SfaNI GCATC 1 cut(s) 475
SmlI CTYRAG 2 cut(s) 116, 467
SmoI CTYRAG 2 cut(s) 116, 467
Sse9I AATT 1 cut(s) 156
SsiI CCGC 8 cut(s) 40, 96, 99, 121, 136, 383, 501, 589
SspMI CTAG 1 cut(s) 711
StyD4I CCNGG 5 cut(s) 131, 168, 232, 262, 386
StyI CCWWGG 1 cut(s) 204
TaqI TCGA 4 cut(s) 154, 257, 300, 521
TasI AATT 1 cut(s) 156
TatI WGTACW 1 cut(s) 51
TauI GCSGC 4 cut(s) 98, 101, 385, 504
TfiI GAWTC 2 cut(s) 224, 515
Tru1I TTAA 6 cut(s) 273, 291, 351, 450, 531, 693
Tru9I TTAA 6 cut(s) 273, 291, 351, 450, 531, 693
TseFI GTSAC 2 cut(s) 266, 394
TseI GCWGC 2 cut(s) 112, 163
Tsp45I GTSAC 2 cut(s) 266, 394
TspDTI ATGAA 3 cut(s) 102, 383, 528
XmiI GTMKAC 1 cut(s) 521
XspI CTAG 1 cut(s) 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.