MD04G1088600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0015036
Physical Location & Seq
Forward (+)
13905565 .. 13906985
1421 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1088600.v1.1.491

Sequence Viewer

Length: 732 bp
ATGGGAGGTCATGGAGGTTTGAATATTCTGCCTCAGAAGCGGTGGAATGTGTACAACTTCGATAACAGAGAGAAGGTACGGCAGGACGAAGAGGCTGCCGCTAAAGAGGAGCAGCTCAAGCGTGAACAGTCACGAAAGCGGGATGCTGAGTTTCGTCTTGAACAGCTCCGAACTGCTCGTGGCCTGGCTCCGGTGAGCCAAGGGAAGGAGCCTGCTGCAATGGAATCAAGCCCTGCTGCAGTGGGATCGAAGTCTGCTGCAGTGGGGTCGAAGTCTGCTGCAGTGAAATCAAAGCCTGGTCATATTAATCTCTTCGAAGGGATTAAGATTTTTTATCCTATTAAGGGGTTGGAGAATGAGGGAGGTGAGGGTAAAGATGAATTTAAGAAAAATAAGAAGATGAAGAAAGAGGAGGCGAAGCCGAGGGTTGTGACAGCAGAAGATGAAAAGTATAGGTTGGGTTATGGAGTTGCTGGCAAAGGAGTTAAGTTGCCTTGGTACCTTGACAGGCTGAGTGCGGATGCAAATGAAGAGAGTGCCAAAGTTGATGAATTGTCAGGAGCAGATAAAGAGAAGAAGAAGAACAAGAGTGGGAAGAAGACATTGGAGGAATTGAGAGAAGAACGGTTGGAAAGGGAGAAGCGAGAGAAGGAAAGGGAACGGACTCTGATACTGAACAAGAGCCGAAAAGATGGAGCTGCTTTTAAGGATAGAGGGTTTTATAGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cir_N

Protein Analysis

244

Amino Acids

27.52

Weight (kDa)

9.69

Isoelectric Point (pI)

48.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16535
fragaria_vesca FvH4_5g18710 FvH4_5g18710 FvH4_5g18710
malus_domestica MD04G1088600.v1.1
prunus_persica Prupe.5G071300_v2.0.a1
pyrus_communis pycom976g00180
rosa_chinensis RchiOBHm_Chr7g0203001
rosa_laevigata RLG00000003558
rosa_multiflora Rmu_sc0013377.1_g000001
rosa_roxburghii Rroxscaffold_3G00254110
rosa_rugosa Rorug07G0074100
rosa_samantha Rh7AG202400 Rh7BG202500 Rh7DG209500
rosa_wichuraiana Rw7G017700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 498
AccB1I GGYRCC 1 cut(s) 498
AciI CCGC 4 cut(s) 40, 99, 139, 518
AclWI GGATC 1 cut(s) 253
AcsI RAATTY 1 cut(s) 380
AfaI GTAC 3 cut(s) 53, 78, 500
AfiI CCNNNNNNNGG 3 cut(s) 190, 205, 344
AgsI TTSAA 2 cut(s) 22, 161
AjnI CCWGG 2 cut(s) 183, 295
AjuI GAANNNNNNNTTGG 2 cut(s) 587, 619
AluBI AGCT 3 cut(s) 115, 166, 698
AluI AGCT 3 cut(s) 115, 166, 698
AlwI GGATC 1 cut(s) 253
AoxI GGCC 1 cut(s) 181
ApeKI GCWGC 7 cut(s) 95, 112, 215, 236, 257, 278, 698
ApoI RAATTY 1 cut(s) 380
AseI ATTAAT 1 cut(s) 306
Asp718I GGTACC 1 cut(s) 498
AsuHPI GGTGA 2 cut(s) 205, 377
AsuII TTCGAA 1 cut(s) 315
BanI GGYRCC 1 cut(s) 498
BauI CACGAG 1 cut(s) 177
BbsI GAAGAC 1 cut(s) 605
BbvI GCAGC 7 cut(s) 82, 124, 202, 223, 244, 265, 685
BccI CCATC 1 cut(s) 686
BceAI ACGGC 1 cut(s) 95
BcgI CGANNNNNNTGC 6 cut(s) 77, 111, 228, 249, 262, 283
BciT130I CCWGG 2 cut(s) 185, 297
BfmI CTRYAG 3 cut(s) 237, 258, 279
BisI GCNGC 8 cut(s) 96, 99, 113, 216, 237, 258, 279, 699
BlsI GCNGC 8 cut(s) 97, 100, 114, 217, 238, 259, 280, 700
Bme1390I CCNGG 2 cut(s) 185, 297
BmiI GGNNCC 3 cut(s) 189, 210, 500
BmrFI CCNGG 2 cut(s) 185, 297
BmsI GCATC 2 cut(s) 133, 511
BpiI GAAGAC 1 cut(s) 605
Bpu14I TTCGAA 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 101
BsaJI CCNNGG 3 cut(s) 199, 422, 494
BsaWI WCCGGW 1 cut(s) 190
Bsc4I CCNNNNNNNGG 3 cut(s) 190, 205, 344
Bse3DI GCAATG 1 cut(s) 225
BseBI CCWGG 2 cut(s) 185, 297
BseDI CCNNGG 3 cut(s) 199, 422, 494
BseGI GGATG 2 cut(s) 148, 526
BseLI CCNNNNNNNGG 3 cut(s) 190, 205, 344
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 3 cut(s) 47, 138, 503
BseRI GAGGAG 2 cut(s) 122, 425
BseXI GCAGC 7 cut(s) 82, 124, 202, 223, 244, 265, 685
BshFI GGCC 1 cut(s) 183
BshNI GGYRCC 1 cut(s) 498
BsiSI CCGG 1 cut(s) 191
BslI CCNNNNNNNGG 3 cut(s) 190, 205, 344
BsnI GGCC 1 cut(s) 183
Bsp119I TTCGAA 1 cut(s) 315
Bsp1407I TGTACA 1 cut(s) 51
Bsp143I GATC 1 cut(s) 245
BspACI CCGC 4 cut(s) 40, 99, 139, 518
BspANI GGCC 1 cut(s) 183
BspCNI CTCAG 3 cut(s) 46, 139, 504
BspLI GGNNCC 3 cut(s) 189, 210, 500
BspMAI CTGCAG 3 cut(s) 241, 262, 283
BspPI GGATC 1 cut(s) 253
BspT104I TTCGAA 1 cut(s) 315
BspT107I GGYRCC 1 cut(s) 498
BsrDI GCAATG 1 cut(s) 225
BsrGI TGTACA 1 cut(s) 51
BssECI CCNNGG 3 cut(s) 199, 422, 494
BssMI GATC 1 cut(s) 245
BssSI CACGAG 1 cut(s) 177
BssT1I CCWWGG 2 cut(s) 199, 494
Bst2BI CACGAG 1 cut(s) 177
Bst2UI CCWGG 2 cut(s) 185, 297
Bst4CI ACNGT 2 cut(s) 129, 627
Bst6I CTCTTC 3 cut(s) 84, 317, 525
BstAUI TGTACA 1 cut(s) 51
BstBI TTCGAA 1 cut(s) 315
BstC8I GCNNGC 2 cut(s) 213, 475
BstDEI CTNAG 3 cut(s) 33, 147, 512
BstF5I GGATG 2 cut(s) 148, 526
BstKTI GATC 1 cut(s) 248
BstMBI GATC 1 cut(s) 245
BstMWI GCNNNNNNNGC 2 cut(s) 37, 118
BstNI CCWGG 2 cut(s) 185, 297
BstSCI CCNGG 2 cut(s) 183, 295
BstSFI CTRYAG 3 cut(s) 237, 258, 279
BstV1I GCAGC 7 cut(s) 82, 124, 202, 223, 244, 265, 685
BstV2I GAAGAC 1 cut(s) 605
BsuRI GGCC 1 cut(s) 183
BtsCI GGATG 2 cut(s) 148, 526
BtsI GCAGTG 3 cut(s) 246, 267, 288
BtsIMutI CAGTG 3 cut(s) 246, 267, 288
Cac8I GCNNGC 2 cut(s) 213, 475
Csp6I GTAC 3 cut(s) 52, 77, 499
CviAII CATG 1 cut(s) 11
CviQI GTAC 3 cut(s) 52, 77, 499
DdeI CTNAG 3 cut(s) 33, 147, 512
DpnI GATC 1 cut(s) 247
DpnII GATC 1 cut(s) 245
Eam1104I CTCTTC 3 cut(s) 84, 317, 525
EarI CTCTTC 3 cut(s) 84, 317, 525
Eco130I CCWWGG 2 cut(s) 199, 494
EcoRII CCWGG 2 cut(s) 183, 295
EcoT14I CCWWGG 2 cut(s) 199, 494
ErhI CCWWGG 2 cut(s) 199, 494
FaeI CATG 1 cut(s) 14
FaiI YATR 5 cut(s) 12, 303, 453, 465, 723
FatI CATG 1 cut(s) 10
FauI CCCGC 1 cut(s) 132
Fnu4HI GCNGC 8 cut(s) 96, 99, 113, 216, 237, 258, 279, 699
FokI GGATG 2 cut(s) 155, 533
Fsp4HI GCNGC 8 cut(s) 96, 99, 113, 216, 237, 258, 279, 699
GluI GCNGC 8 cut(s) 96, 99, 113, 216, 237, 258, 279, 699
HaeIII GGCC 1 cut(s) 183
HapII CCGG 1 cut(s) 191
Hin1II CATG 1 cut(s) 14
HinfI GANTC 2 cut(s) 224, 664
HpaII CCGG 1 cut(s) 191
HphI GGTGA 2 cut(s) 205, 377
Hpy166II GTNNAC 2 cut(s) 52, 125
Hpy188I TCNGA 3 cut(s) 36, 170, 669
Hpy188III TCNNGA 3 cut(s) 132, 158, 558
Hpy8I GTNNAC 2 cut(s) 52, 125
HpyAV CCTTC 4 cut(s) 67, 199, 311, 643
HpyCH4III ACNGT 2 cut(s) 129, 627
HpyCH4V TGCA 5 cut(s) 218, 239, 260, 281, 524
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 118
HpyF3I CTNAG 3 cut(s) 33, 147, 512
Hsp92II CATG 1 cut(s) 14
KpnI GGTACC 1 cut(s) 502
Kzo9I GATC 1 cut(s) 245
LmnI GCTCC 6 cut(s) 109, 171, 193, 208, 560, 695
Lsp1109I GCAGC 7 cut(s) 82, 124, 202, 223, 244, 265, 685
LweI GCATC 2 cut(s) 133, 511
MaeIII GTNAC 2 cut(s) 129, 430
MalI GATC 1 cut(s) 247
MboI GATC 1 cut(s) 245
MluCI AATT 3 cut(s) 380, 551, 611
MlyI GAGTC 1 cut(s) 658
MmeI TCCRAC 2 cut(s) 330, 609
MseI TTAA 6 cut(s) 306, 324, 342, 384, 486, 705
MspI CCGG 1 cut(s) 191
MspR9I CCNGG 2 cut(s) 185, 297
MvaI CCWGG 2 cut(s) 185, 297
MwoI GCNNNNNNNGC 2 cut(s) 37, 118
NdeII GATC 1 cut(s) 245
NlaIII CATG 1 cut(s) 14
NlaIV GGNNCC 3 cut(s) 189, 210, 500
NmeAIII GCCGAG 1 cut(s) 447
NmuCI GTSAC 2 cut(s) 129, 430
NspV TTCGAA 1 cut(s) 315
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 8 cut(s) 97, 100, 114, 217, 238, 259, 280, 700
PleI GAGTC 1 cut(s) 658
PpsI GAGTC 1 cut(s) 658
PshBI ATTAAT 1 cut(s) 306
Psp6I CCWGG 2 cut(s) 183, 295
PspGI CCWGG 2 cut(s) 183, 295
PspN4I GGNNCC 3 cut(s) 189, 210, 500
PstI CTGCAG 3 cut(s) 241, 262, 283
RsaI GTAC 3 cut(s) 53, 78, 500
RsaNI GTAC 3 cut(s) 52, 77, 499
SaqAI TTAA 6 cut(s) 306, 324, 342, 384, 486, 705
SatI GCNGC 8 cut(s) 96, 99, 113, 216, 237, 258, 279, 699
Sau3AI GATC 1 cut(s) 245
SchI GAGTC 1 cut(s) 658
ScrFI CCNGG 2 cut(s) 185, 297
SfaNI GCATC 2 cut(s) 133, 511
SfcI CTRYAG 3 cut(s) 237, 258, 279
SfuI TTCGAA 1 cut(s) 315
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 3 cut(s) 380, 551, 611
SsiI CCGC 4 cut(s) 40, 99, 139, 518
SspI AATATT 1 cut(s) 25
StyD4I CCNGG 2 cut(s) 183, 295
StyI CCWWGG 2 cut(s) 199, 494
TaaI ACNGT 2 cut(s) 129, 627
TaqI TCGA 4 cut(s) 60, 248, 269, 315
TasI AATT 3 cut(s) 380, 551, 611
TatI WGTACW 1 cut(s) 51
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 6 cut(s) 306, 324, 342, 384, 486, 705
Tru9I TTAA 6 cut(s) 306, 324, 342, 384, 486, 705
TscAI CASTG 3 cut(s) 246, 267, 288
TseFI GTSAC 2 cut(s) 129, 430
TseI GCWGC 7 cut(s) 95, 112, 215, 236, 257, 278, 698
Tsp45I GTSAC 2 cut(s) 129, 430
TspDTI ATGAA 5 cut(s) 393, 416, 459, 543, 564
TspGWI ACGGA 1 cut(s) 676
TspRI CASTG 3 cut(s) 246, 267, 288
VspI ATTAAT 1 cut(s) 306
XapI RAATTY 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.