Rroxscaffold_3G00254110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0015036
Physical Location & Seq
Reverse (-)
48254155 .. 48254859
705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00254110.1

Sequence Viewer

Length: 705 bp
ATGGGTGGTCATGGAGGTCTGAATATATTGCCTCAGAAGCGGTGGAATGTGTACAACTTTGATAATAGAGAGAAGGTTCGGCTGGATGAAGAAGCCGCCGCCAAAGAAGAGCAGCTCAAGCGGGAACAGGCCAGGCGGAGAGACACCGAGTATCGAATTGAGCAGCTCCGGGTGGCCCGTGGATTGGCCCCATTGATCCAACCCAAGGAGTCTGCTGAAGAGGAATCAAAGCCGGGGCCTTCTGCTGAAGTGGAGTCGAAGCCTGGTCACATTAACCTCTTTGAAGGGATTAAGATTTTCGACCCTATCAAGGGGTTGGAGAAGGAGGGAAGTGATGGGAAAGATGGGTTTAGGAAGAATAAGAAGATGAAAAAGGAGGAGCCACCCAGGGTTGTGACAGCAGAGGATGAGAAGTATAGGTTGGGATATGGAGTTGCTGGGAAAGGAGTGAAGTTGCCATGGTACCTTGAGAGGCTTAATGCGGATGCAAATGGTGAGAGTGTCGAGGGTGATGAATCGACAGGGGTTAAGGAAGAGAAGAAGAACAAAAGTGGGAAGAAGACGATAGAAGAGCTGAGGGAAGAGCGGTTGAGAAGGGAGAAGAGGGAGAAGGAGAGGGTGCGCACTTTGATTCTCAACAAGAGCCAGAGCCAGAGTCGAAGGGATGGAGCTGATTTTAAGTATAGAAGATTCACCAGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cir_N

Protein Analysis

234

Amino Acids

27.11

Weight (kDa)

9.6

Isoelectric Point (pI)

67.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16535
fragaria_vesca FvH4_5g18710 FvH4_5g18710 FvH4_5g18710
malus_domestica MD04G1088600.v1.1
prunus_persica Prupe.5G071300_v2.0.a1
pyrus_communis pycom976g00180
rosa_chinensis RchiOBHm_Chr7g0203001
rosa_laevigata RLG00000003558
rosa_multiflora Rmu_sc0013377.1_g000001
rosa_roxburghii Rroxscaffold_3G00254110
rosa_rugosa Rorug07G0074100
rosa_samantha Rh7AG202400 Rh7BG202500 Rh7DG209500
rosa_wichuraiana Rw7G017700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 623
Acc65I GGTACC 1 cut(s) 462
AccB1I GGYRCC 1 cut(s) 462
AccBSI CCGCTC 1 cut(s) 586
AciI CCGC 7 cut(s) 40, 96, 99, 121, 136, 482, 586
AclWI GGATC 1 cut(s) 190
AcuI CTGAAG 2 cut(s) 237, 267
AfaI GTAC 2 cut(s) 53, 464
AfiI CCNNNNNNNGG 4 cut(s) 184, 205, 310, 311
AgsI TTSAA 1 cut(s) 284
AjnI CCWGG 4 cut(s) 131, 262, 386, 695
AjuI GAANNNNNNNTTGG 2 cut(s) 404, 436
AluBI AGCT 4 cut(s) 115, 166, 574, 671
AluI AGCT 4 cut(s) 115, 166, 574, 671
Alw26I GTCTC 1 cut(s) 135
AlwI GGATC 1 cut(s) 190
AoxI GGCC 4 cut(s) 129, 174, 186, 236
ApeKI GCWGC 2 cut(s) 112, 163
Asp718I GGTACC 1 cut(s) 462
AspLEI GCGC 1 cut(s) 624
AspS9I GGNCC 3 cut(s) 175, 187, 236
AsuC2I CCSGG 2 cut(s) 170, 234
AsuHPI GGTGA 3 cut(s) 506, 521, 685
BanI GGYRCC 1 cut(s) 462
BbsI GAAGAC 1 cut(s) 566
BbvCI CCTCAGC 1 cut(s) 575
BbvI GCAGC 2 cut(s) 124, 175
BccI CCATC 3 cut(s) 329, 338, 659
BciT130I CCWGG 4 cut(s) 133, 264, 388, 697
BcnI CCSGG 2 cut(s) 170, 234
BcoDI GTCTC 1 cut(s) 135
BisI GCNGC 4 cut(s) 96, 99, 113, 164
BlsI GCNGC 4 cut(s) 97, 100, 114, 165
Bme1390I CCNGG 6 cut(s) 133, 170, 234, 264, 388, 697
BmgT120I GGNCC 3 cut(s) 175, 187, 236
BmiI GGNNCC 4 cut(s) 189, 237, 381, 464
BmrFI CCNGG 6 cut(s) 133, 170, 234, 264, 388, 697
BmsI GCATC 1 cut(s) 475
BpiI GAAGAC 1 cut(s) 566
Bpu10I CCTNAGC 1 cut(s) 575
BpuEI CTTGAG 2 cut(s) 101, 488
BpuMI CCSGG 2 cut(s) 170, 234
BsaJI CCNNGG 6 cut(s) 178, 204, 233, 386, 387, 458
Bsc4I CCNNNNNNNGG 4 cut(s) 184, 205, 310, 311
BseBI CCWGG 4 cut(s) 133, 264, 388, 697
BseDI CCNNGG 6 cut(s) 178, 204, 233, 386, 387, 458
BseGI GGATG 4 cut(s) 91, 412, 490, 670
BseLI CCNNNNNNNGG 4 cut(s) 184, 205, 310, 311
BseMII CTCAG 2 cut(s) 47, 566
BseRI GAGGAG 1 cut(s) 392
BseXI GCAGC 2 cut(s) 124, 175
BseYI CCCAGC 1 cut(s) 437
BshFI GGCC 4 cut(s) 131, 176, 188, 238
BshNI GGYRCC 1 cut(s) 462
BsiSI CCGG 2 cut(s) 169, 233
BslI CCNNNNNNNGG 4 cut(s) 184, 205, 310, 311
BsmAI GTCTC 1 cut(s) 135
BsnI GGCC 4 cut(s) 131, 176, 188, 238
Bsp1407I TGTACA 1 cut(s) 51
Bsp143I GATC 1 cut(s) 195
Bsp19I CCATGG 1 cut(s) 458
BspACI CCGC 7 cut(s) 40, 96, 99, 121, 136, 482, 586
BspANI GGCC 4 cut(s) 131, 176, 188, 238
BspCNI CTCAG 2 cut(s) 46, 567
BspLI GGNNCC 4 cut(s) 189, 237, 381, 464
BspPI GGATC 1 cut(s) 190
BspQI GCTCTTC 3 cut(s) 102, 564, 576
BspT107I GGYRCC 1 cut(s) 462
BsrBI CCGCTC 1 cut(s) 586
BsrGI TGTACA 1 cut(s) 51
BssECI CCNNGG 6 cut(s) 178, 204, 233, 386, 387, 458
BssMI GATC 1 cut(s) 195
BssT1I CCWWGG 2 cut(s) 204, 458
Bst2UI CCWGG 4 cut(s) 133, 264, 388, 697
Bst6I CTCTTC 6 cut(s) 102, 213, 528, 564, 576, 596
BstAUI TGTACA 1 cut(s) 51
BstDEI CTNAG 2 cut(s) 33, 575
BstDSI CCRYGG 2 cut(s) 178, 458
BstF5I GGATG 4 cut(s) 91, 412, 490, 670
BstHHI GCGC 1 cut(s) 624
BstKTI GATC 1 cut(s) 198
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 1 cut(s) 195
BstMWI GCNNNNNNNGC 2 cut(s) 37, 118
BstNI CCWGG 4 cut(s) 133, 264, 388, 697
BstSCI CCNGG 6 cut(s) 131, 168, 232, 262, 386, 695
BstV1I GCAGC 2 cut(s) 124, 175
BstV2I GAAGAC 1 cut(s) 566
BsuRI GGCC 4 cut(s) 131, 176, 188, 238
BtgI CCRYGG 2 cut(s) 178, 458
BtsCI GGATG 4 cut(s) 91, 412, 490, 670
CfoI GCGC 1 cut(s) 624
Cfr13I GGNCC 3 cut(s) 175, 187, 236
Csp6I GTAC 2 cut(s) 52, 463
CviAII CATG 2 cut(s) 11, 459
CviQI GTAC 2 cut(s) 52, 463
DdeI CTNAG 2 cut(s) 33, 575
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
Eam1104I CTCTTC 6 cut(s) 102, 213, 528, 564, 576, 596
EarI CTCTTC 6 cut(s) 102, 213, 528, 564, 576, 596
EciI GGCGGA 1 cut(s) 151
Eco130I CCWWGG 2 cut(s) 204, 458
Eco57I CTGAAG 2 cut(s) 237, 267
EcoO109I RGGNCCY 1 cut(s) 236
EcoRII CCWGG 4 cut(s) 131, 262, 386, 695
EcoT14I CCWWGG 2 cut(s) 204, 458
ErhI CCWWGG 2 cut(s) 204, 458
FaeI CATG 2 cut(s) 14, 462
FaiI YATR 6 cut(s) 12, 26, 417, 429, 460, 684
FatI CATG 2 cut(s) 10, 458
FauI CCCGC 1 cut(s) 114
Fnu4HI GCNGC 4 cut(s) 96, 99, 113, 164
FokI GGATG 4 cut(s) 98, 419, 497, 677
Fsp4HI GCNGC 4 cut(s) 96, 99, 113, 164
FspAI RTGCGCAY 1 cut(s) 623
FspI TGCGCA 1 cut(s) 623
GlaI GCGC 1 cut(s) 623
GluI GCNGC 4 cut(s) 96, 99, 113, 164
GsaI CCCAGC 1 cut(s) 441
HaeIII GGCC 4 cut(s) 131, 176, 188, 238
HapII CCGG 2 cut(s) 169, 233
HhaI GCGC 1 cut(s) 624
Hin1II CATG 2 cut(s) 14, 462
Hin6I GCGC 1 cut(s) 622
HinP1I GCGC 1 cut(s) 622
HinfI GANTC 7 cut(s) 209, 224, 254, 515, 631, 655, 690
HpaII CCGG 2 cut(s) 169, 233
HphI GGTGA 3 cut(s) 506, 521, 685
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 2 cut(s) 21, 36
Hpy8I GTNNAC 1 cut(s) 52
HpyAV CCTTC 7 cut(s) 67, 249, 278, 316, 588, 604, 654
HpyCH4V TGCA 1 cut(s) 488
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 118
HpyF3I CTNAG 2 cut(s) 33, 575
Hsp92II CATG 2 cut(s) 14, 462
HspAI GCGC 1 cut(s) 622
KpnI GGTACC 1 cut(s) 466
Kzo9I GATC 1 cut(s) 195
LguI GCTCTTC 3 cut(s) 102, 564, 576
LmnI GCTCC 3 cut(s) 171, 379, 668
Lsp1109I GCAGC 2 cut(s) 124, 175
LweI GCATC 1 cut(s) 475
MaeIII GTNAC 2 cut(s) 266, 394
MalI GATC 1 cut(s) 197
MbiI CCGCTC 1 cut(s) 586
MboI GATC 1 cut(s) 195
MluCI AATT 1 cut(s) 156
MlyI GAGTC 3 cut(s) 218, 263, 664
MmeI TCCRAC 2 cut(s) 223, 297
MseI TTAA 5 cut(s) 273, 291, 477, 528, 678
MspI CCGG 2 cut(s) 169, 233
MspR9I CCNGG 6 cut(s) 133, 170, 234, 264, 388, 697
MvaI CCWGG 4 cut(s) 133, 264, 388, 697
MwoI GCNNNNNNNGC 2 cut(s) 37, 118
NciI CCSGG 2 cut(s) 170, 234
NcoI CCATGG 1 cut(s) 458
NdeII GATC 1 cut(s) 195
NlaIII CATG 2 cut(s) 14, 462
NlaIV GGNNCC 4 cut(s) 189, 237, 381, 464
NmuCI GTSAC 2 cut(s) 266, 394
NsbI TGCGCA 1 cut(s) 623
PasI CCCWGGG 1 cut(s) 387
PciSI GCTCTTC 3 cut(s) 102, 564, 576
PfeI GAWTC 4 cut(s) 224, 515, 631, 690
PkrI GCNGC 4 cut(s) 97, 100, 114, 165
PleI GAGTC 3 cut(s) 217, 262, 663
PpsI GAGTC 3 cut(s) 217, 262, 663
Psp6I CCWGG 4 cut(s) 131, 262, 386, 695
PspFI CCCAGC 1 cut(s) 437
PspGI CCWGG 4 cut(s) 131, 262, 386, 695
PspN4I GGNNCC 4 cut(s) 189, 237, 381, 464
PspPI GGNCC 3 cut(s) 175, 187, 236
RsaI GTAC 2 cut(s) 53, 464
RsaNI GTAC 2 cut(s) 52, 463
SapI GCTCTTC 3 cut(s) 102, 564, 576
SaqAI TTAA 5 cut(s) 273, 291, 477, 528, 678
SatI GCNGC 4 cut(s) 96, 99, 113, 164
Sau3AI GATC 1 cut(s) 195
Sau96I GGNCC 3 cut(s) 175, 187, 236
SchI GAGTC 3 cut(s) 218, 263, 664
ScrFI CCNGG 6 cut(s) 133, 170, 234, 264, 388, 697
SfaNI GCATC 1 cut(s) 475
SmlI CTYRAG 2 cut(s) 116, 467
SmoI CTYRAG 2 cut(s) 116, 467
Sse9I AATT 1 cut(s) 156
SsiI CCGC 7 cut(s) 40, 96, 99, 121, 136, 482, 586
StyD4I CCNGG 6 cut(s) 131, 168, 232, 262, 386, 695
StyI CCWWGG 2 cut(s) 204, 458
TaqI TCGA 6 cut(s) 154, 257, 300, 504, 518, 658
TasI AATT 1 cut(s) 156
TatI WGTACW 1 cut(s) 51
TauI GCSGC 2 cut(s) 98, 101
TfiI GAWTC 4 cut(s) 224, 515, 631, 690
Tru1I TTAA 5 cut(s) 273, 291, 477, 528, 678
Tru9I TTAA 5 cut(s) 273, 291, 477, 528, 678
TseFI GTSAC 2 cut(s) 266, 394
TseI GCWGC 2 cut(s) 112, 163
Tsp45I GTSAC 2 cut(s) 266, 394
TspDTI ATGAA 3 cut(s) 102, 383, 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.