Prupe.5G071300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0015036
Physical Location & Seq
Reverse (-)
8623690 .. 8625437
1748 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G071300.1

Sequence Viewer

Length: 666 bp
ATGGGTGGTCATGGTGGTCTGAATATACTGCCTCAGAAGCGGTGGAATGTGTACAACTTTGATAATAGAGAGAAGGTGCGACAGGACGAAGAAGCTGCCGCCAAAGAAGAGCAGCTCAAGCGTGAACAGTCGCGAAAGCGGGATGCTGAGTTCCGTCTTGAGCAGCTCCGGACTGCCCGTGGCTTGGCTCCGGTGAGCCAAGGGGAGAAGCCTGCTGCAGTGGAATCAAAGCCGGGTCATATTAATCTGTTTGAAGGGATTAAAATTTTTGACCCTATTAAAGGATTAGAGAATGAGGGAGATGATGGTAAAGATGGGTTTAAGAAGAATAAGAAGACGAAGAAGGAGGAGAAGCCCAGGGTTGTGACTGCAGAAGATGAGAAGTATAGGTTGGGTTATGGAGTTGCTGGTAAAGGAGTTAAGCTGCCATGGTACCTTGAAAGGCTGAGTGCAGATGCAACTGATGACAGTGGTGACGGTGATGAATCGTCCAGAGGGGCTAAGGGGGAGATGAAGAACAAGAGTGGGAAGAAGACGTTGGAAGAATTGAGGGAAGAACGATTGGAAAGGGAGAAGCGAGAGAAAGAAAGGGAACGCGCATTGATTCTGAACAAGACCCGAAAAGGTGGAGCTGCTTTGAAGGATAGAAGGTTTTCTAGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cir_N

Protein Analysis

222

Amino Acids

25.24

Weight (kDa)

9.61

Isoelectric Point (pI)

50.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16535
fragaria_vesca FvH4_5g18710 FvH4_5g18710 FvH4_5g18710
malus_domestica MD04G1088600.v1.1
prunus_persica Prupe.5G071300_v2.0.a1
pyrus_communis pycom976g00180
rosa_chinensis RchiOBHm_Chr7g0203001
rosa_laevigata RLG00000003558
rosa_multiflora Rmu_sc0013377.1_g000001
rosa_roxburghii Rroxscaffold_3G00254110
rosa_rugosa Rorug07G0074100
rosa_samantha Rh7AG202400 Rh7BG202500 Rh7DG209500
rosa_wichuraiana Rw7G017700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 432
AccB1I GGYRCC 1 cut(s) 432
AccII CGCG 2 cut(s) 133, 597
AccIII TCCGGA 1 cut(s) 168
AciI CCGC 3 cut(s) 40, 99, 139
AcsI RAATTY 1 cut(s) 264
AfaI GTAC 2 cut(s) 53, 434
AfiI CCNNNNNNNGG 2 cut(s) 184, 281
AgsI TTSAA 3 cut(s) 254, 440, 640
AjnI CCWGG 1 cut(s) 356
AjuI GAANNNNNNNTTGG 4 cut(s) 374, 406, 521, 553
AloI GAACNNNNNNTCC 2 cut(s) 134, 166
AluBI AGCT 5 cut(s) 95, 115, 166, 424, 632
AluI AGCT 5 cut(s) 95, 115, 166, 424, 632
Aor13HI TCCGGA 1 cut(s) 168
ApeKI GCWGC 6 cut(s) 95, 112, 163, 215, 424, 632
ApoI RAATTY 1 cut(s) 264
AseI ATTAAT 1 cut(s) 243
Asp700I GAANNNNTTC 1 cut(s) 652
Asp718I GGTACC 1 cut(s) 432
AspLEI GCGC 1 cut(s) 599
AsuC2I CCSGG 1 cut(s) 234
AsuHPI GGTGA 3 cut(s) 205, 485, 491
BanI GGYRCC 1 cut(s) 432
BbsI GAAGAC 2 cut(s) 341, 539
BbvI GCAGC 6 cut(s) 82, 124, 175, 202, 411, 619
BccI CCATC 2 cut(s) 299, 308
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BciT130I CCWGG 1 cut(s) 358
BcnI CCSGG 1 cut(s) 234
BfaI CTAG 1 cut(s) 657
BfmI CTRYAG 2 cut(s) 216, 369
BisI GCNGC 7 cut(s) 96, 99, 113, 164, 216, 425, 633
BlsI GCNGC 7 cut(s) 97, 100, 114, 165, 217, 426, 634
Bme1390I CCNGG 2 cut(s) 234, 358
BmiI GGNNCC 2 cut(s) 189, 434
BmrFI CCNGG 2 cut(s) 234, 358
BmsI GCATC 2 cut(s) 133, 445
BpiI GAAGAC 2 cut(s) 341, 539
Bpu10I CCTNAGC 1 cut(s) 501
BpuEI CTTGAG 2 cut(s) 101, 179
BpuMI CCSGG 1 cut(s) 234
BsaJI CCNNGG 5 cut(s) 178, 199, 356, 357, 428
BsaWI WCCGGW 2 cut(s) 168, 190
Bsc4I CCNNNNNNNGG 2 cut(s) 184, 281
BseAI TCCGGA 1 cut(s) 168
BseBI CCWGG 1 cut(s) 358
BseDI CCNNGG 5 cut(s) 178, 199, 356, 357, 428
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 2 cut(s) 184, 281
BseMII CTCAG 3 cut(s) 47, 138, 437
BseRI GAGGAG 1 cut(s) 362
BseXI GCAGC 6 cut(s) 82, 124, 175, 202, 411, 619
BsgI GTGCAG 1 cut(s) 471
Bsh1236I CGCG 2 cut(s) 133, 597
BshNI GGYRCC 1 cut(s) 432
BsiSI CCGG 3 cut(s) 169, 191, 233
BslI CCNNNNNNNGG 2 cut(s) 184, 281
Bsp13I TCCGGA 1 cut(s) 168
Bsp1407I TGTACA 1 cut(s) 51
Bsp19I CCATGG 1 cut(s) 428
Bsp68I TCGCGA 1 cut(s) 133
BspACI CCGC 3 cut(s) 40, 99, 139
BspCNI CTCAG 3 cut(s) 46, 139, 438
BspEI TCCGGA 1 cut(s) 168
BspFNI CGCG 2 cut(s) 133, 597
BspLI GGNNCC 2 cut(s) 189, 434
BspMAI CTGCAG 2 cut(s) 220, 373
BspQI GCTCTTC 1 cut(s) 102
BspT107I GGYRCC 1 cut(s) 432
BsrGI TGTACA 1 cut(s) 51
BssECI CCNNGG 5 cut(s) 178, 199, 356, 357, 428
BssT1I CCWWGG 2 cut(s) 199, 428
Bst2UI CCWGG 1 cut(s) 358
Bst4CI ACNGT 3 cut(s) 129, 470, 479
Bst6I CTCTTC 1 cut(s) 102
BstAUI TGTACA 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 213
BstDEI CTNAG 4 cut(s) 33, 147, 446, 501
BstDSI CCRYGG 2 cut(s) 178, 428
BstENI CCTNNNNNAGG 1 cut(s) 279
BstF5I GGATG 1 cut(s) 148
BstFNI CGCG 2 cut(s) 133, 597
BstHHI GCGC 1 cut(s) 599
BstMWI GCNNNNNNNGC 2 cut(s) 37, 118
BstNI CCWGG 1 cut(s) 358
BstSCI CCNGG 2 cut(s) 232, 356
BstSFI CTRYAG 2 cut(s) 216, 369
BstUI CGCG 2 cut(s) 133, 597
BstV1I GCAGC 6 cut(s) 82, 124, 175, 202, 411, 619
BstV2I GAAGAC 2 cut(s) 341, 539
BtgI CCRYGG 2 cut(s) 178, 428
BtsCI GGATG 1 cut(s) 148
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 2 cut(s) 225, 475
BtuMI TCGCGA 1 cut(s) 133
Cac8I GCNNGC 1 cut(s) 213
CfoI GCGC 1 cut(s) 599
Csp6I GTAC 2 cut(s) 52, 433
CviAII CATG 2 cut(s) 11, 429
CviQI GTAC 2 cut(s) 52, 433
DdeI CTNAG 4 cut(s) 33, 147, 446, 501
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Eco130I CCWWGG 2 cut(s) 199, 428
EcoNI CCTNNNNNAGG 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 356
EcoT14I CCWWGG 2 cut(s) 199, 428
ErhI CCWWGG 2 cut(s) 199, 428
FaeI CATG 2 cut(s) 14, 432
FaiI YATR 6 cut(s) 12, 26, 240, 387, 399, 430
FatI CATG 2 cut(s) 10, 428
FauI CCCGC 1 cut(s) 132
Fnu4HI GCNGC 7 cut(s) 96, 99, 113, 164, 216, 425, 633
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 7 cut(s) 96, 99, 113, 164, 216, 425, 633
FspBI CTAG 1 cut(s) 657
GlaI GCGC 1 cut(s) 598
GluI GCNGC 7 cut(s) 96, 99, 113, 164, 216, 425, 633
HapII CCGG 3 cut(s) 169, 191, 233
HhaI GCGC 1 cut(s) 599
Hin1II CATG 2 cut(s) 14, 432
Hin6I GCGC 1 cut(s) 597
HinP1I GCGC 1 cut(s) 597
HinfI GANTC 3 cut(s) 224, 485, 604
HpaII CCGG 3 cut(s) 169, 191, 233
HphI GGTGA 3 cut(s) 205, 485, 491
Hpy166II GTNNAC 2 cut(s) 52, 125
Hpy188I TCNGA 3 cut(s) 21, 36, 609
Hpy188III TCNNGA 4 cut(s) 132, 158, 169, 492
Hpy8I GTNNAC 2 cut(s) 52, 125
HpyAV CCTTC 5 cut(s) 67, 248, 337, 634, 642
HpyCH4III ACNGT 3 cut(s) 129, 470, 479
HpyCH4IV ACGT 1 cut(s) 536
HpyCH4V TGCA 4 cut(s) 218, 371, 452, 458
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 118
HpyF3I CTNAG 4 cut(s) 33, 147, 446, 501
HpySE526I ACGT 1 cut(s) 536
Hsp92II CATG 2 cut(s) 14, 432
HspAI GCGC 1 cut(s) 597
Kpn2I TCCGGA 1 cut(s) 168
KpnI GGTACC 1 cut(s) 436
LguI GCTCTTC 1 cut(s) 102
LmnI GCTCC 3 cut(s) 171, 193, 629
LpnPI CCDG 9 cut(s) 68, 182, 204, 225, 246, 343, 370, 393, 505
Lsp1109I GCAGC 6 cut(s) 82, 124, 175, 202, 411, 619
LweI GCATC 2 cut(s) 133, 445
MaeI CTAG 1 cut(s) 657
MaeII ACGT 1 cut(s) 536
MaeIII GTNAC 2 cut(s) 364, 473
MluCI AATT 2 cut(s) 264, 545
MmeI TCCRAC 1 cut(s) 519
MnlI CCTC 6 cut(s) 42, 289, 340, 488, 543, 654
MroI TCCGGA 1 cut(s) 168
MroXI GAANNNNTTC 1 cut(s) 652
MseI TTAA 5 cut(s) 243, 261, 279, 321, 420
MspI CCGG 3 cut(s) 169, 191, 233
MspR9I CCNGG 2 cut(s) 234, 358
MvaI CCWGG 1 cut(s) 358
MvnI CGCG 2 cut(s) 133, 597
MwoI GCNNNNNNNGC 2 cut(s) 37, 118
NciI CCSGG 1 cut(s) 234
NcoI CCATGG 1 cut(s) 428
NlaIII CATG 2 cut(s) 14, 432
NlaIV GGNNCC 2 cut(s) 189, 434
NmuCI GTSAC 2 cut(s) 364, 473
NruI TCGCGA 1 cut(s) 133
PasI CCCWGGG 1 cut(s) 357
PciSI GCTCTTC 1 cut(s) 102
PdmI GAANNNNTTC 1 cut(s) 652
PfeI GAWTC 3 cut(s) 224, 485, 604
PkrI GCNGC 7 cut(s) 97, 100, 114, 165, 217, 426, 634
PshBI ATTAAT 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 356
PspGI CCWGG 1 cut(s) 356
PspN4I GGNNCC 2 cut(s) 189, 434
PstI CTGCAG 2 cut(s) 220, 373
RruI TCGCGA 1 cut(s) 133
RsaI GTAC 2 cut(s) 53, 434
RsaNI GTAC 2 cut(s) 52, 433
SapI GCTCTTC 1 cut(s) 102
SaqAI TTAA 5 cut(s) 243, 261, 279, 321, 420
SatI GCNGC 7 cut(s) 96, 99, 113, 164, 216, 425, 633
ScrFI CCNGG 2 cut(s) 234, 358
SfaNI GCATC 2 cut(s) 133, 445
SfcI CTRYAG 2 cut(s) 216, 369
SmlI CTYRAG 2 cut(s) 116, 158
SmoI CTYRAG 2 cut(s) 116, 158
Sse9I AATT 2 cut(s) 264, 545
SsiI CCGC 3 cut(s) 40, 99, 139
SspMI CTAG 1 cut(s) 657
StyD4I CCNGG 2 cut(s) 232, 356
StyI CCWWGG 2 cut(s) 199, 428
TaaI ACNGT 3 cut(s) 129, 470, 479
TaiI ACGT 1 cut(s) 539
TasI AATT 2 cut(s) 264, 545
TatI WGTACW 1 cut(s) 51
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 3 cut(s) 224, 485, 604
Tru1I TTAA 5 cut(s) 243, 261, 279, 321, 420
Tru9I TTAA 5 cut(s) 243, 261, 279, 321, 420
TscAI CASTG 2 cut(s) 225, 475
TseFI GTSAC 2 cut(s) 364, 473
TseI GCWGC 6 cut(s) 95, 112, 163, 215, 424, 632
Tsp45I GTSAC 2 cut(s) 364, 473
TspDTI ATGAA 2 cut(s) 498, 527
TspGWI ACGGA 1 cut(s) 143
TspRI CASTG 2 cut(s) 225, 475
VspI ATTAAT 1 cut(s) 243
XagI CCTNNNNNAGG 1 cut(s) 279
XapI RAATTY 1 cut(s) 264
XmnI GAANNNNTTC 1 cut(s) 652
XspI CTAG 1 cut(s) 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.