FvH4_5g18710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015036
Physical Location & Seq
Forward (+)
10757418 .. 10758901
1484 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g18710.t2

Sequence Viewer

Length: 699 bp
ATGGGTGGTCATGGAGGTCTGAATATATTGCCGCAGAAGCGGTGGAATGTGTACAACTTTGATAATAGAGAGAAGGTGCGGCTGGATGAAGAAGCCGCCGCCAAAGAGGAGCAGCTCAAGCGTGAACAGGCCAGGCGGAGAGACACCGAGTACCGAATTGAGCAGCTCCGGGTGGCCCGTGGATTGGCCCCATTGATCCAACCCAAGGAGTCTGCTGGGGAGGAATCAAAGCCGGGTCAGGCTGCTGAAGTGGAGTCGAAGCCTGGTCATATTAACCTCTTTGAAGGGATTAAGATTTTCGACCCTATCAAGGGGTTGGAGAAGGAGGGAAGTGAGGGGAAAGATGGGTTTAAGAAGAATAAGAAGATGAAGAAAGAGGAGCCGCCCAGGGTGGTGACAGCAGAGGATGAGAAGTATAGGTTGGGATATGGAGTTGCGGGAAAGGGTGTTAAGTTGCCGTGGTACCTTGAAAGGCAGAATGTGGATGCAAATGGCGAGGATGATGATTCATTGACAGGGGTTAAGGAAGAGAAGAAGAACAAGAGTGGGAAGAAGACAATAGAAGAGCTAAGGGAAGAACGGTTGAGGAGGGAGAAGCGAGAGAAAGAAAGGGTGCGCGCTTTGATTCTGAACAACAGCAGGAGACAGAGCCAAAGGGATGGAGCTGATTTTAAGGATAGAAGGTACACTAGGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cir_N

Protein Analysis

233

Amino Acids

26.91

Weight (kDa)

9.6

Isoelectric Point (pI)

62.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16535
fragaria_vesca FvH4_5g18710 FvH4_5g18710 FvH4_5g18710
malus_domestica MD04G1088600.v1.1
prunus_persica Prupe.5G071300_v2.0.a1
pyrus_communis pycom976g00180
rosa_chinensis RchiOBHm_Chr7g0203001
rosa_laevigata RLG00000003558
rosa_multiflora Rmu_sc0013377.1_g000001
rosa_roxburghii Rroxscaffold_3G00254110
rosa_rugosa Rorug07G0074100
rosa_samantha Rh7AG202400 Rh7BG202500 Rh7DG209500
rosa_wichuraiana Rw7G017700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 462
AccB1I GGYRCC 1 cut(s) 462
AccII CGCG 1 cut(s) 618
AciI CCGC 8 cut(s) 32, 40, 79, 96, 99, 136, 383, 437
AclWI GGATC 1 cut(s) 190
AcuI CTGAAG 1 cut(s) 267
AfaI GTAC 4 cut(s) 53, 152, 464, 686
AfiI CCNNNNNNNGG 4 cut(s) 184, 205, 310, 311
AgsI TTSAA 2 cut(s) 284, 470
AjnI CCWGG 3 cut(s) 131, 262, 386
AjuI GAANNNNNNNTTGG 2 cut(s) 404, 436
AluBI AGCT 4 cut(s) 115, 166, 568, 665
AluI AGCT 4 cut(s) 115, 166, 568, 665
Alw26I GTCTC 2 cut(s) 135, 637
AlwI GGATC 1 cut(s) 190
AoxI GGCC 3 cut(s) 129, 174, 186
ApeKI GCWGC 3 cut(s) 112, 163, 242
Asp718I GGTACC 1 cut(s) 462
AspLEI GCGC 2 cut(s) 618, 620
AspS9I GGNCC 2 cut(s) 175, 187
AsuC2I CCSGG 2 cut(s) 170, 234
AsuHPI GGTGA 1 cut(s) 406
BanI GGYRCC 1 cut(s) 462
BbsI GAAGAC 1 cut(s) 560
BbvI GCAGC 3 cut(s) 124, 175, 229
BccI CCATC 2 cut(s) 338, 653
BceAI ACGGC 1 cut(s) 442
BciT130I CCWGG 3 cut(s) 133, 264, 388
BcnI CCSGG 2 cut(s) 170, 234
BcoDI GTCTC 2 cut(s) 135, 637
BfaI CTAG 1 cut(s) 690
BisI GCNGC 8 cut(s) 32, 80, 96, 99, 113, 164, 243, 383
BlsI GCNGC 8 cut(s) 33, 81, 97, 100, 114, 165, 244, 384
Bme1390I CCNGG 5 cut(s) 133, 170, 234, 264, 388
BmgT120I GGNCC 2 cut(s) 175, 187
BmiI GGNNCC 3 cut(s) 189, 381, 464
BmrFI CCNGG 5 cut(s) 133, 170, 234, 264, 388
BmsI GCATC 1 cut(s) 475
BpiI GAAGAC 1 cut(s) 560
Bpu10I CCTNAGC 1 cut(s) 569
BpuEI CTTGAG 1 cut(s) 101
BpuMI CCSGG 2 cut(s) 170, 234
BsaJI CCNNGG 5 cut(s) 178, 204, 386, 387, 458
Bsc4I CCNNNNNNNGG 4 cut(s) 184, 205, 310, 311
BseBI CCWGG 3 cut(s) 133, 264, 388
BseDI CCNNGG 5 cut(s) 178, 204, 386, 387, 458
BseGI GGATG 5 cut(s) 91, 412, 490, 505, 664
BseLI CCNNNNNNNGG 4 cut(s) 184, 205, 310, 311
BsePI GCGCGC 1 cut(s) 616
BseRI GAGGAG 3 cut(s) 122, 392, 601
BseXI GCAGC 3 cut(s) 124, 175, 229
BseYI CCCAGC 1 cut(s) 215
Bsh1236I CGCG 1 cut(s) 618
BshFI GGCC 3 cut(s) 131, 176, 188
BshNI GGYRCC 1 cut(s) 462
BsiSI CCGG 2 cut(s) 169, 233
BslI CCNNNNNNNGG 4 cut(s) 184, 205, 310, 311
BsmAI GTCTC 2 cut(s) 135, 637
BsnI GGCC 3 cut(s) 131, 176, 188
Bsp1407I TGTACA 1 cut(s) 51
Bsp143I GATC 1 cut(s) 195
BspACI CCGC 8 cut(s) 32, 40, 79, 96, 99, 136, 383, 437
BspANI GGCC 3 cut(s) 131, 176, 188
BspFNI CGCG 1 cut(s) 618
BspLI GGNNCC 3 cut(s) 189, 381, 464
BspPI GGATC 1 cut(s) 190
BspQI GCTCTTC 1 cut(s) 558
BspT107I GGYRCC 1 cut(s) 462
BsrGI TGTACA 1 cut(s) 51
BssECI CCNNGG 5 cut(s) 178, 204, 386, 387, 458
BssHII GCGCGC 1 cut(s) 616
BssMI GATC 1 cut(s) 195
BssT1I CCWWGG 1 cut(s) 204
Bst2UI CCWGG 3 cut(s) 133, 264, 388
Bst4CI ACNGT 1 cut(s) 582
Bst6I CTCTTC 2 cut(s) 522, 558
BstAUI TGTACA 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 618
BstDEI CTNAG 1 cut(s) 569
BstDSI CCRYGG 2 cut(s) 178, 458
BstF5I GGATG 5 cut(s) 91, 412, 490, 505, 664
BstFNI CGCG 1 cut(s) 618
BstHHI GCGC 2 cut(s) 618, 620
BstKTI GATC 1 cut(s) 198
BstMAI GTCTC 2 cut(s) 135, 637
BstMBI GATC 1 cut(s) 195
BstMWI GCNNNNNNNGC 2 cut(s) 37, 118
BstNI CCWGG 3 cut(s) 133, 264, 388
BstSCI CCNGG 5 cut(s) 131, 168, 232, 262, 386
BstUI CGCG 1 cut(s) 618
BstV1I GCAGC 3 cut(s) 124, 175, 229
BstV2I GAAGAC 1 cut(s) 560
BstXI CCANNNNNNTGG 1 cut(s) 659
BsuRI GGCC 3 cut(s) 131, 176, 188
BtgI CCRYGG 2 cut(s) 178, 458
BtsCI GGATG 5 cut(s) 91, 412, 490, 505, 664
Cac8I GCNNGC 1 cut(s) 618
CfoI GCGC 2 cut(s) 618, 620
Cfr13I GGNCC 2 cut(s) 175, 187
Csp6I GTAC 4 cut(s) 52, 151, 463, 685
CviAII CATG 1 cut(s) 11
CviQI GTAC 4 cut(s) 52, 151, 463, 685
DdeI CTNAG 1 cut(s) 569
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
Eam1104I CTCTTC 2 cut(s) 522, 558
EarI CTCTTC 2 cut(s) 522, 558
EciI GGCGGA 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 204
Eco57I CTGAAG 1 cut(s) 267
EcoRII CCWGG 3 cut(s) 131, 262, 386
EcoT14I CCWWGG 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 1 cut(s) 14
FaiI YATR 5 cut(s) 12, 26, 270, 417, 429
FatI CATG 1 cut(s) 10
FauI CCCGC 1 cut(s) 430
Fnu4HI GCNGC 8 cut(s) 32, 80, 96, 99, 113, 164, 243, 383
FokI GGATG 5 cut(s) 98, 419, 497, 512, 671
Fsp4HI GCNGC 8 cut(s) 32, 80, 96, 99, 113, 164, 243, 383
FspBI CTAG 1 cut(s) 690
GlaI GCGC 2 cut(s) 617, 619
GluI GCNGC 8 cut(s) 32, 80, 96, 99, 113, 164, 243, 383
GsaI CCCAGC 1 cut(s) 219
HaeIII GGCC 3 cut(s) 131, 176, 188
HapII CCGG 2 cut(s) 169, 233
HhaI GCGC 2 cut(s) 618, 620
Hin1II CATG 1 cut(s) 14
Hin6I GCGC 2 cut(s) 616, 618
HinP1I GCGC 2 cut(s) 616, 618
HinfI GANTC 5 cut(s) 209, 224, 254, 506, 625
HpaII CCGG 2 cut(s) 169, 233
HphI GGTGA 1 cut(s) 406
Hpy166II GTNNAC 3 cut(s) 52, 125, 687
Hpy188I TCNGA 2 cut(s) 21, 630
Hpy8I GTNNAC 3 cut(s) 52, 125, 687
HpyAV CCTTC 4 cut(s) 67, 278, 316, 675
HpyCH4III ACNGT 1 cut(s) 582
HpyCH4V TGCA 1 cut(s) 488
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 118
HpyF3I CTNAG 1 cut(s) 569
Hsp92II CATG 1 cut(s) 14
HspAI GCGC 2 cut(s) 616, 618
KpnI GGTACC 1 cut(s) 466
Kzo9I GATC 1 cut(s) 195
LguI GCTCTTC 1 cut(s) 558
LmnI GCTCC 4 cut(s) 109, 171, 379, 662
Lsp1109I GCAGC 3 cut(s) 124, 175, 229
LweI GCATC 1 cut(s) 475
MaeI CTAG 1 cut(s) 690
MaeIII GTNAC 1 cut(s) 394
MalI GATC 1 cut(s) 197
MboI GATC 1 cut(s) 195
MluCI AATT 1 cut(s) 156
MlyI GAGTC 2 cut(s) 218, 263
MmeI TCCRAC 2 cut(s) 223, 297
MseI TTAA 6 cut(s) 273, 291, 351, 450, 522, 672
MspI CCGG 2 cut(s) 169, 233
MspR9I CCNGG 5 cut(s) 133, 170, 234, 264, 388
MvaI CCWGG 3 cut(s) 133, 264, 388
MvnI CGCG 1 cut(s) 618
MwoI GCNNNNNNNGC 2 cut(s) 37, 118
NciI CCSGG 2 cut(s) 170, 234
NdeII GATC 1 cut(s) 195
NlaIII CATG 1 cut(s) 14
NlaIV GGNNCC 3 cut(s) 189, 381, 464
NmuCI GTSAC 1 cut(s) 394
PasI CCCWGGG 1 cut(s) 387
PauI GCGCGC 1 cut(s) 616
PciSI GCTCTTC 1 cut(s) 558
PfeI GAWTC 3 cut(s) 224, 506, 625
PkrI GCNGC 8 cut(s) 33, 81, 97, 100, 114, 165, 244, 384
PleI GAGTC 2 cut(s) 217, 262
PpsI GAGTC 2 cut(s) 217, 262
Psp6I CCWGG 3 cut(s) 131, 262, 386
PspFI CCCAGC 1 cut(s) 215
PspGI CCWGG 3 cut(s) 131, 262, 386
PspN4I GGNNCC 3 cut(s) 189, 381, 464
PspPI GGNCC 2 cut(s) 175, 187
PteI GCGCGC 1 cut(s) 616
RsaI GTAC 4 cut(s) 53, 152, 464, 686
RsaNI GTAC 4 cut(s) 52, 151, 463, 685
SapI GCTCTTC 1 cut(s) 558
SaqAI TTAA 6 cut(s) 273, 291, 351, 450, 522, 672
SatI GCNGC 8 cut(s) 32, 80, 96, 99, 113, 164, 243, 383
Sau3AI GATC 1 cut(s) 195
Sau96I GGNCC 2 cut(s) 175, 187
SchI GAGTC 2 cut(s) 218, 263
ScrFI CCNGG 5 cut(s) 133, 170, 234, 264, 388
SfaNI GCATC 1 cut(s) 475
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 1 cut(s) 156
SsiI CCGC 8 cut(s) 32, 40, 79, 96, 99, 136, 383, 437
SspMI CTAG 1 cut(s) 690
StyD4I CCNGG 5 cut(s) 131, 168, 232, 262, 386
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 582
TaqI TCGA 2 cut(s) 257, 300
TasI AATT 1 cut(s) 156
TatI WGTACW 1 cut(s) 51
TauI GCSGC 5 cut(s) 34, 82, 98, 101, 385
TfiI GAWTC 3 cut(s) 224, 506, 625
Tru1I TTAA 6 cut(s) 273, 291, 351, 450, 522, 672
Tru9I TTAA 6 cut(s) 273, 291, 351, 450, 522, 672
TseFI GTSAC 1 cut(s) 394
TseI GCWGC 3 cut(s) 112, 163, 242
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 3 cut(s) 102, 383, 498
XspI CTAG 1 cut(s) 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.