Rorug07G0074100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0015036
Physical Location & Seq
Forward (+)
5717462 .. 5719574
2113 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0074100.1

Sequence Viewer

Length: 903 bp
ATGGACACTGCTCAATGGCCACAGGGAATTGTGGTGAAACCAATAGAAGAGATAGTGACAAACACATGCCCTAAGCCTTCTTCTGCGAATAATCTAGAGAGGAAACTTGCAAGGCCTCAGAAAGAATCAGCCCTAAACTGTCCAAGGTGCAACTCCACCAACACCAAATTCTGTTACTACAACAACTACAGCCTCACACAACCCAGATACTTCTGCAAGACCTGTAGAAGGTACTGGACTGAAGGCGGGTCCCTCAGGAACATCCCAGTTGGTGGAGGCTCAAGGAAGAATAAGAGATCATCATCTTCTTCCTCATCAACAACAACTTCTAATATTTCGAACAACTCATCAAAGAGGCTTCCTGATCTGATACAACCCCAAGGCAACCAAGGTAACCAAGGCCAAGATCTAAACTTGGGCTTTCCATCTAATCAAGTTTTTGCACAGCATCAAATCCCCAACATTGATCAAAACAGTGACAAGAACAACAACTCTTCTAGTACTACCACAACAGCATCTCACCTCTCAGCTTTGGAGCTTCTCACTGGTTTGACCTCCGGGGGTTTGAACTCCTTCATGCCCATGCCAGTGCCTAATTCAGATCCCAACAGCAGCAACAACAGTGCAAGTGTATATACATCTGGGTTTCCCATGAGTGAGTTGATGATCAAGCCAACCCTTAATTTCTCTCTTGATGGGCTTGGAAGTGGGTATGGGAGTGCTCTACAAGGTCATCATGTTCAAGAAAATAGTGGGAGGCTTTTGTTTCCATTTGAGGATTTGAAACAAGTGTCAGGCAGTGGTAGTGGAATTGATCATCATCAGCAGAACAACAAGGAGCATCATCATGGTGGAGACTCAACTGGGTATTGGACTGGAATGTTAGGAGGAGGAACATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cir_N

Protein Analysis

300

Amino Acids

32.52

Weight (kDa)

8.7

Isoelectric Point (pI)

44.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 43 - 99 1.3e-33 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015036)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16535
fragaria_vesca FvH4_5g18710 FvH4_5g18710 FvH4_5g18710
malus_domestica MD04G1088600.v1.1
prunus_persica Prupe.5G071300_v2.0.a1
pyrus_communis pycom976g00180
rosa_chinensis RchiOBHm_Chr7g0203001
rosa_laevigata RLG00000003558
rosa_multiflora Rmu_sc0013377.1_g000001
rosa_roxburghii Rroxscaffold_3G00254110
rosa_rugosa Rorug07G0074100
rosa_samantha Rh7AG202400 Rh7BG202500 Rh7DG209500
rosa_wichuraiana Rw7G017700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 272
AciI CCGC 1 cut(s) 246
AclWI GGATC 1 cut(s) 596
AcoI YGGCCR 1 cut(s) 17
AcsI RAATTY 1 cut(s) 167
AcuI CTGAAG 1 cut(s) 261
AfaI GTAC 2 cut(s) 233, 502
AfiI CCNNNNNNNGG 2 cut(s) 228, 272
AgsI TTSAA 3 cut(s) 568, 743, 784
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AluBI AGCT 2 cut(s) 530, 538
AluI AGCT 2 cut(s) 530, 538
Alw21I GWGCWC 1 cut(s) 724
Alw26I GTCTC 1 cut(s) 849
AlwI GGATC 1 cut(s) 596
AoxI GGCC 3 cut(s) 17, 113, 400
ApeKI GCWGC 1 cut(s) 612
ApoI RAATTY 1 cut(s) 167
Asp700I GAANNNNTTC 1 cut(s) 572
AspS9I GGNCC 1 cut(s) 249
AsuC2I CCSGG 1 cut(s) 559
AsuHPI GGTGA 2 cut(s) 46, 512
AsuII TTCGAA 1 cut(s) 338
AvaII GGWCC 1 cut(s) 249
AxyI CCTNAGG 1 cut(s) 254
BalI TGGCCA 1 cut(s) 19
Bbv12I GWGCWC 1 cut(s) 724
BbvI GCAGC 1 cut(s) 624
BccI CCATC 2 cut(s) 433, 689
BclI TGATCA 3 cut(s) 466, 666, 814
BcnI CCSGG 1 cut(s) 559
BcoDI GTCTC 1 cut(s) 849
BfaI CTAG 2 cut(s) 95, 498
BfmI CTRYAG 2 cut(s) 187, 223
BglII AGATCT 1 cut(s) 406
BisI GCNGC 1 cut(s) 613
BlsI GCNGC 1 cut(s) 614
BmcAI AGTACT 1 cut(s) 502
Bme1390I CCNGG 1 cut(s) 559
Bme18I GGWCC 1 cut(s) 249
BmgT120I GGNCC 1 cut(s) 249
BmiI GGNNCC 2 cut(s) 250, 251
BmrFI CCNGG 1 cut(s) 559
BmrI ACTGGG 2 cut(s) 260, 873
BmsI GCATC 3 cut(s) 457, 524, 850
BmuI ACTGGG 2 cut(s) 260, 873
Bpu10I CCTNAGC 1 cut(s) 72
Bpu14I TTCGAA 1 cut(s) 338
BpuEI CTTGAG 1 cut(s) 265
BpuMI CCSGG 1 cut(s) 559
BsaBI GATNNNNATC 2 cut(s) 301, 819
BsaJI CCNNGG 5 cut(s) 143, 379, 388, 397, 558
Bsc4I CCNNNNNNNGG 2 cut(s) 228, 272
Bse1I ACTGG 6 cut(s) 239, 266, 550, 587, 868, 880
Bse21I CCTNAGG 1 cut(s) 254
Bse8I GATNNNNATC 2 cut(s) 301, 819
BseDI CCNNGG 5 cut(s) 143, 379, 388, 397, 558
BseGI GGATG 1 cut(s) 261
BseJI GATNNNNATC 2 cut(s) 301, 819
BseLI CCNNNNNNNGG 2 cut(s) 228, 272
BseMII CTCAG 3 cut(s) 131, 268, 540
BseNI ACTGG 6 cut(s) 239, 266, 550, 587, 868, 880
BseRI GAGGAG 1 cut(s) 903
BseXI GCAGC 1 cut(s) 624
BshFI GGCC 3 cut(s) 19, 115, 402
BsiHKAI GWGCWC 1 cut(s) 724
BsiSI CCGG 1 cut(s) 558
BslFI GGGAC 1 cut(s) 235
BslI CCNNNNNNNGG 2 cut(s) 228, 272
BsmAI GTCTC 1 cut(s) 849
BsmFI GGGAC 1 cut(s) 235
BsnI GGCC 3 cut(s) 19, 115, 402
Bsp119I TTCGAA 1 cut(s) 338
Bsp1286I GDGCHC 1 cut(s) 724
Bsp143I GATC 7 cut(s) 296, 364, 406, 466, 601, 666, 814
BspACI CCGC 1 cut(s) 246
BspANI GGCC 3 cut(s) 19, 115, 402
BspCNI CTCAG 3 cut(s) 130, 267, 539
BspLI GGNNCC 2 cut(s) 250, 251
BspPI GGATC 1 cut(s) 596
BspT104I TTCGAA 1 cut(s) 338
BsrI ACTGG 6 cut(s) 239, 266, 550, 587, 868, 880
BssECI CCNNGG 5 cut(s) 143, 379, 388, 397, 558
BssMI GATC 7 cut(s) 296, 364, 406, 466, 601, 666, 814
BssT1I CCWWGG 4 cut(s) 143, 379, 388, 397
Bst4CI ACNGT 3 cut(s) 140, 476, 623
Bst6I CTCTTC 2 cut(s) 42, 499
BstBI TTCGAA 1 cut(s) 338
BstDEI CTNAG 4 cut(s) 72, 117, 254, 526
BstEII GGTNACC 1 cut(s) 392
BstENI CCTNNNNNAGG 1 cut(s) 226
BstF5I GGATG 1 cut(s) 261
BstKTI GATC 7 cut(s) 299, 367, 409, 469, 604, 669, 817
BstMAI GTCTC 1 cut(s) 849
BstMBI GATC 7 cut(s) 296, 364, 406, 466, 601, 666, 814
BstNSI RCATGY 1 cut(s) 69
BstPI GGTNACC 1 cut(s) 392
BstSCI CCNGG 1 cut(s) 557
BstSFI CTRYAG 2 cut(s) 187, 223
BstV1I GCAGC 1 cut(s) 624
BstX2I RGATCY 2 cut(s) 406, 601
BstYI RGATCY 2 cut(s) 406, 601
Bsu36I CCTNAGG 1 cut(s) 254
BsuRI GGCC 3 cut(s) 19, 115, 402
BtsCI GGATG 1 cut(s) 261
BtsI GCAGTG 2 cut(s) 6, 805
BtsIMutI CAGTG 6 cut(s) 6, 481, 543, 594, 628, 805
Cfr13I GGNCC 1 cut(s) 249
Csp6I GTAC 2 cut(s) 232, 501
CviAII CATG 7 cut(s) 66, 577, 583, 652, 737, 848, 897
CviQI GTAC 2 cut(s) 232, 501
DdeI CTNAG 4 cut(s) 72, 117, 254, 526
DpnI GATC 7 cut(s) 298, 366, 408, 468, 603, 668, 816
DpnII GATC 7 cut(s) 296, 364, 406, 466, 601, 666, 814
EaeI YGGCCR 1 cut(s) 17
Eam1104I CTCTTC 2 cut(s) 42, 499
EarI CTCTTC 2 cut(s) 42, 499
Eco130I CCWWGG 4 cut(s) 143, 379, 388, 397
Eco147I AGGCCT 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 249
Eco57I CTGAAG 1 cut(s) 261
Eco81I CCTNAGG 1 cut(s) 254
Eco91I GGTNACC 1 cut(s) 392
EcoNI CCTNNNNNAGG 1 cut(s) 226
EcoO109I RGGNCCY 1 cut(s) 249
EcoO65I GGTNACC 1 cut(s) 392
EcoT14I CCWWGG 4 cut(s) 143, 379, 388, 397
ErhI CCWWGG 4 cut(s) 143, 379, 388, 397
FaeI CATG 7 cut(s) 69, 580, 586, 655, 740, 851, 900
FaqI GGGAC 1 cut(s) 235
FatI CATG 7 cut(s) 65, 576, 582, 651, 736, 847, 896
FauI CCCGC 1 cut(s) 239
FbaI TGATCA 3 cut(s) 466, 666, 814
Fnu4HI GCNGC 1 cut(s) 613
FokI GGATG 1 cut(s) 248
Fsp4HI GCNGC 1 cut(s) 613
FspBI CTAG 2 cut(s) 95, 498
GluI GCNGC 1 cut(s) 613
HaeIII GGCC 3 cut(s) 19, 115, 402
HapII CCGG 1 cut(s) 558
Hin1II CATG 7 cut(s) 69, 580, 586, 655, 740, 851, 900
HinfI GANTC 2 cut(s) 125, 857
HpaII CCGG 1 cut(s) 558
HphI GGTGA 2 cut(s) 46, 512
Hpy188I TCNGA 3 cut(s) 120, 369, 601
Hpy188III TCNNGA 5 cut(s) 95, 256, 362, 692, 743
HpyAV CCTTC 4 cut(s) 87, 222, 236, 583
HpyCH4III ACNGT 3 cut(s) 140, 476, 623
HpyCH4V TGCA 5 cut(s) 110, 150, 216, 443, 626
HpyF3I CTNAG 4 cut(s) 72, 117, 254, 526
Hsp92II CATG 7 cut(s) 69, 580, 586, 655, 740, 851, 900
KflI GGGWCCC 1 cut(s) 249
Ksp22I TGATCA 3 cut(s) 466, 666, 814
Kzo9I GATC 7 cut(s) 296, 364, 406, 466, 601, 666, 814
LmnI GCTCC 2 cut(s) 535, 838
Lsp1109I GCAGC 1 cut(s) 624
LweI GCATC 3 cut(s) 457, 524, 850
MaeI CTAG 2 cut(s) 95, 498
MaeIII GTNAC 4 cut(s) 55, 173, 392, 476
MalI GATC 7 cut(s) 298, 366, 408, 468, 603, 668, 816
MboI GATC 7 cut(s) 296, 364, 406, 466, 601, 666, 814
MboII GAAGA 6 cut(s) 59, 72, 297, 298, 300, 486
MflI RGATCY 2 cut(s) 406, 601
MhlI GDGCHC 1 cut(s) 724
MlsI TGGCCA 1 cut(s) 19
MluCI AATT 5 cut(s) 27, 167, 595, 682, 810
MluNI TGGCCA 1 cut(s) 19
MlyI GAGTC 1 cut(s) 851
Mox20I TGGCCA 1 cut(s) 19
MroXI GAANNNNTTC 1 cut(s) 572
MscI TGGCCA 1 cut(s) 19
MseI TTAA 1 cut(s) 681
MslI CAYNNNNRTG 4 cut(s) 581, 587, 846, 849
Msp20I TGGCCA 1 cut(s) 19
MspI CCGG 1 cut(s) 558
MspR9I CCNGG 1 cut(s) 559
NciI CCSGG 1 cut(s) 559
NdeII GATC 7 cut(s) 296, 364, 406, 466, 601, 666, 814
NlaIII CATG 7 cut(s) 69, 580, 586, 655, 740, 851, 900
NlaIV GGNNCC 2 cut(s) 250, 251
NmuCI GTSAC 2 cut(s) 55, 476
NspI RCATGY 1 cut(s) 69
NspV TTCGAA 1 cut(s) 338
PceI AGGCCT 1 cut(s) 115
PdmI GAANNNNTTC 1 cut(s) 572
PfeI GAWTC 1 cut(s) 125
PflMI CCANNNNNTGG 1 cut(s) 272
PkrI GCNGC 1 cut(s) 614
PleI GAGTC 1 cut(s) 851
PpsI GAGTC 1 cut(s) 851
PpuMI RGGWCCY 1 cut(s) 249
Psp5II RGGWCCY 1 cut(s) 249
PspEI GGTNACC 1 cut(s) 392
PspN4I GGNNCC 2 cut(s) 250, 251
PspPI GGNCC 1 cut(s) 249
PspPPI RGGWCCY 1 cut(s) 249
PsuI RGATCY 2 cut(s) 406, 601
RsaI GTAC 2 cut(s) 233, 502
RsaNI GTAC 2 cut(s) 232, 501
RseI CAYNNNNRTG 4 cut(s) 581, 587, 846, 849
SaqAI TTAA 1 cut(s) 681
SatI GCNGC 1 cut(s) 613
Sau3AI GATC 7 cut(s) 296, 364, 406, 466, 601, 666, 814
Sau96I GGNCC 1 cut(s) 249
ScaI AGTACT 1 cut(s) 502
SchI GAGTC 1 cut(s) 851
ScrFI CCNGG 1 cut(s) 559
SduI GDGCHC 1 cut(s) 724
SetI ASST 9 cut(s) 149, 224, 233, 394, 525, 532, 540, 557, 733
SfaNI GCATC 3 cut(s) 457, 524, 850
SfcI CTRYAG 2 cut(s) 187, 223
SfuI TTCGAA 1 cut(s) 338
SinI GGWCC 1 cut(s) 249
SmiMI CAYNNNNRTG 4 cut(s) 581, 587, 846, 849
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
Sse9I AATT 5 cut(s) 27, 167, 595, 682, 810
SseBI AGGCCT 1 cut(s) 115
SsiI CCGC 1 cut(s) 246
SspI AATATT 1 cut(s) 334
SspMI CTAG 2 cut(s) 95, 498
StuI AGGCCT 1 cut(s) 115
StyD4I CCNGG 1 cut(s) 557
StyI CCWWGG 4 cut(s) 143, 379, 388, 397
TaaI ACNGT 3 cut(s) 140, 476, 623
TaqI TCGA 1 cut(s) 338
TasI AATT 5 cut(s) 27, 167, 595, 682, 810
TatI WGTACW 1 cut(s) 500
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 1 cut(s) 681
Tru9I TTAA 1 cut(s) 681
TscAI CASTG 6 cut(s) 13, 481, 550, 594, 628, 805
TseFI GTSAC 2 cut(s) 55, 476
TseI GCWGC 1 cut(s) 612
Tsp45I GTSAC 2 cut(s) 55, 476
TspDTI ATGAA 1 cut(s) 565
TspRI CASTG 6 cut(s) 13, 481, 550, 594, 628, 805
Van91I CCANNNNNTGG 1 cut(s) 272
VpaK11BI GGWCC 1 cut(s) 249
XagI CCTNNNNNAGG 1 cut(s) 226
XapI RAATTY 1 cut(s) 167
XbaI TCTAGA 1 cut(s) 94
XceI RCATGY 1 cut(s) 69
XmnI GAANNNNTTC 1 cut(s) 572
XspI CTAG 2 cut(s) 95, 498
ZrmI AGTACT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.