Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008377

Physical Location & Seq

Genomic Coordinates Reverse (-)

9340920 .. 9343074

Gene Structure 2155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G16580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGTTACCTGTGAGAGAAAGTCTTCAGAAACAAGTTAAGATTTTGATTGGATTAGGGAATTTAGGGTTTGGTGGTTATAGAGGATTGTACACTAGATTTACTAACCCTAACGGGTTTTTAGAACCAGCTAGCTCTGATTTGTTGTTGATTAACGAAAGGAGGAATCTTTCTGTTATTGGTGCTGTTTCTCGAACTTTCTCTGTTCCTTCTGTATCTGGTCCGGCCTTTCAGGTCTGTGGATATCACATTGATCTTTTGCTTTCGGATCCGTGTAAATCAATGGCGAGTTTAGGTTCTAAGTCTTTGTTTGTGGATCGTCATTCTGCTTCTCTTGTTTCAAAGCGTTTCACTGGTGGTATGGTATCTGGAGATGGTCCTAACCGTGGAAGAATCAGTATGAGACTCAGAGGTAAAGATCACAATGAGAAGTCTACGATCTGTGCGTATTTTGCTTATAGAGGTGCTAAGAGATGGATTTATTTGAATCAGCAAAGAAGAGGAATGGGATTTAGAGGCTTGCATAGCTCACTCTCTAATCGCTTATCAGCTGGGAATGCGCCTGATGTCTCTTTAGATAACTCTGTTACTGACGAACAGGTTAGAGATTCTTCGGATTCTGTAGCGGCTAAGCTATGTACTAAGCCTCTGAAGCTTGTCTCGGGGTCGTGTTATCTACCGCATCCTGATAAAGAGGCCACTGGGGGAGAGGATGCACATTTTATCTGTGCTGAAGAGCAAGCATTAGGTGTGGCAGATGGTGTGGGGGGTTGGGCAGAGCTTGGTATTGATGCAGGTTACTATTCTCGGGAGCTTATGTCTAACTCAGTGAATGCAATCCAAGATGAGCCTAAAGGTTCGATTGATCCAGCCAGAGTATTGGAAAAAGCTCATACTTGCACAAAGTCGCAAGGGTCTTCAACAGCTTGCATCATAGCCTTAACCAACCAGGGACTTCATGCAATCAATTTAGGCGACAGCGGGTTCATGGTTGTTCGTGAAGGGCATACGGTTTTCCGTTCCCCTGTTCAACAGCATGACTTCAACTTCACCTATCAGCTGGAGAGTGGAAGAAACGGCGATTTGCCAAGCTCAGGTCAGGTTTTCACTGTTGCTGTCGCTCCTGGAGACGTCATAATAGCTGGAACAGATGGGTTGTTTGACAACCTGTACAACAACGAGATCACAGCCATAGTGGTTCACGCTGTGAGAGCCAACATAGATCCCCAGGTAACAGCGCAGAAGATTGCAGCATTGGCGCGACAAAGAGCACAGGACAAAAACAGACAAACTCCATTCTCGACAGCAGCACAAGATGCTGGCTTCAGATACTACGGTGGTAAGCTTGATGACATTACAGTTGTTGTCTCTTATGTGGCGGCTTCGAAAGAAGAAGGAAAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C_2 SpoIIE

Protein Analysis

467

Amino Acids

50.3

Weight (kDa)

8.32

Isoelectric Point (pI)

34.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16580
fragaria_vesca	FvH4_2g40080 FvH4_2g40080 FvH4_2g40080 FvH4_2g40080
malus_domestica	MD08G1032700.v1.1 MD15G1029400.v1.1
prunus_persica	Prupe.1G382000_v2.0.a1 Prupe.1G382000_v2.0.a1 Prupe.1G382000_v2.0.a1
pyrus_communis	pycom08g02600
rosa_chinensis	RchiOBHm_Chr6g0300681
rosa_laevigata	RLG00000011312
rosa_multiflora	Rmu_sc0004226.1_g000013 Rmu_sc0014374.1_g000003
rosa_roxburghii	Rroxscaffold_7G00167520
rosa_rugosa	Rorug06G0298200
rosa_samantha	Rh6AG411000 Rh6BG418200 Rh6CG425700 Rh6DG411100
rosa_wichuraiana	Rw0G002180 Rw6G035960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1131
Acc36I	ACCTGC	1 cut(s)	782
AccI	GTMKAC	1 cut(s)	431
AccII	CGCG	1 cut(s)	1258
AciI	CCGC	4 cut(s)	623, 677, 978, 1376
AclWI	GGATC	5 cut(s)	260, 273, 321, 857, 1214
AcsI	RAATTY	1 cut(s)	58
AcuI	CTGAAG	4 cut(s)	8, 668, 750, 1306
AcyI	GRCGYC	1 cut(s)	1128
AdeI	CACNNNGTG	1 cut(s)	1204
AfaI	GTAC	3 cut(s)	89, 637, 1169
AfiI	CCNNNNNNNGG	2 cut(s)	383, 1091
AgsI	TTSAA	5 cut(s)	339, 484, 918, 1028, 1042
AjnI	CCWGG	3 cut(s)	945, 1120, 1224
Alw21I	GWGCWC	1 cut(s)	1270
Alw26I	GTCTC	5 cut(s)	394, 571, 661, 1119, 1369
AlwI	GGATC	5 cut(s)	260, 273, 321, 857, 1214
Ama87I	CYCGRG	2 cut(s)	658, 804
AoxI	GGCC	2 cut(s)	222, 693
ApeKI	GCWGC	2 cut(s)	1247, 1304
ApoI	RAATTY	1 cut(s)	58
Asp700I	GAANNNNTTC	1 cut(s)	21
AspLEI	GCGC	3 cut(s)	559, 1237, 1258
AspS9I	GGNCC	2 cut(s)	218, 374
AsuHPI	GGTGA	1 cut(s)	1039
AsuII	TTCGAA	1 cut(s)	1382
AsuNHI	GCTAGC	1 cut(s)	128
AvaI	CYCGRG	2 cut(s)	658, 804
AvaII	GGWCC	2 cut(s)	218, 374
BaeI	ACNNNNGTAYC	2 cut(s)	1318, 1351
BamHI	GGATCC	1 cut(s)	265
BbsI	GAAGAC	2 cut(s)	14, 906
Bbv12I	GWGCWC	1 cut(s)	1270
BbvI	GCAGC	2 cut(s)	1259, 1316
BccI	CCATC	4 cut(s)	365, 465, 749, 1142
BceAI	ACGGC	1 cut(s)	1090
BciT130I	CCWGG	3 cut(s)	947, 1122, 1226
BcoDI	GTCTC	5 cut(s)	394, 571, 661, 1119, 1369
BfaI	CTAG	2 cut(s)	93, 129
BfmI	CTRYAG	1 cut(s)	618
BfuAI	ACCTGC	1 cut(s)	782
BisI	GCNGC	4 cut(s)	624, 1248, 1305, 1377
BlpI	GCTNAGC	1 cut(s)	627
BlsI	GCNGC	4 cut(s)	625, 1249, 1306, 1378
Bme1390I	CCNGG	3 cut(s)	947, 1122, 1226
Bme18I	GGWCC	2 cut(s)	218, 374
BmeT110I	CYCGRG	2 cut(s)	658, 804
BmgT120I	GGNCC	2 cut(s)	218, 374
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	3 cut(s)	947, 1122, 1226
BmrI	ACTGGG	1 cut(s)	708
BmsI	GCATC	5 cut(s)	688, 700, 778, 936, 1303
BmtI	GCTAGC	1 cut(s)	132
BmuI	ACTGGG	1 cut(s)	708
BpiI	GAAGAC	2 cut(s)	14, 906
BpmI	CTGGAG	3 cut(s)	387, 1079, 1143
Bpu10I	CCTNAGC	1 cut(s)	1090
Bpu1102I	GCTNAGC	1 cut(s)	627
Bpu14I	TTCGAA	1 cut(s)	1382
BsaHI	GRCGYC	1 cut(s)	1128
BsaJI	CCNNGG	3 cut(s)	382, 946, 1224
BsaXI	ACNNNNNCTCC	2 cut(s)	800, 830
Bsc4I	CCNNNNNNNGG	2 cut(s)	383, 1091
Bse1I	ACTGG	2 cut(s)	355, 703
BseBI	CCWGG	3 cut(s)	947, 1122, 1226
BseDI	CCNNGG	3 cut(s)	382, 946, 1224
BseGI	GGATG	2 cut(s)	679, 715
BseLI	CCNNNNNNNGG	2 cut(s)	383, 1091
BseMII	CTCAG	3 cut(s)	418, 837, 1104
BseNI	ACTGG	2 cut(s)	355, 703
BseXI	GCAGC	2 cut(s)	1259, 1316
BseYI	CCCAGC	1 cut(s)	548
Bsh1236I	CGCG	1 cut(s)	1258
BshFI	GGCC	2 cut(s)	224, 695
BsiHKAI	GWGCWC	1 cut(s)	1270
BsiHKCI	CYCGRG	2 cut(s)	658, 804
BsiSI	CCGG	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	963
BslI	CCNNNNNNNGG	2 cut(s)	383, 1091
BsmAI	GTCTC	5 cut(s)	394, 571, 661, 1119, 1369
BsmBI	CGTCTC	1 cut(s)	1119
BsmFI	GGGAC	1 cut(s)	963
BsmI	GAATGC	2 cut(s)	559, 835
BsnI	GGCC	2 cut(s)	224, 695
BsoBI	CYCGRG	2 cut(s)	658, 804
Bsp119I	TTCGAA	1 cut(s)	1382
Bsp1286I	GDGCHC	1 cut(s)	1270
Bsp1407I	TGTACA	2 cut(s)	87, 1167
Bsp143I	GATC	8 cut(s)	250, 265, 313, 415, 435, 862, 1179, 1219
Bsp1720I	GCTNAGC	1 cut(s)	627
BspACI	CCGC	4 cut(s)	623, 677, 978, 1376
BspANI	GGCC	2 cut(s)	224, 695
BspCNI	CTCAG	3 cut(s)	417, 836, 1103
BspFNI	CGCG	1 cut(s)	1258
BspLI	GGNNCC	1 cut(s)	267
BspMI	ACCTGC	1 cut(s)	782
BspOI	GCTAGC	1 cut(s)	132
BspPI	GGATC	5 cut(s)	260, 273, 321, 857, 1214
BspQI	GCTCTTC	1 cut(s)	726
BspT104I	TTCGAA	1 cut(s)	1382
BsrGI	TGTACA	2 cut(s)	87, 1167
BsrI	ACTGG	2 cut(s)	355, 703
BssECI	CCNNGG	3 cut(s)	382, 946, 1224
BssMI	GATC	8 cut(s)	250, 265, 313, 415, 435, 862, 1179, 1219
BssNI	GRCGYC	1 cut(s)	1128
Bst2UI	CCWGG	3 cut(s)	947, 1122, 1226
Bst4CI	ACNGT	5 cut(s)	383, 1009, 1108, 1334, 1357
Bst6I	CTCTTC	2 cut(s)	490, 726
BstACI	GRCGYC	1 cut(s)	1128
BstAPI	GCANNNNNTGC	1 cut(s)	1313
BstAUI	TGTACA	2 cut(s)	87, 1167
BstBI	TTCGAA	1 cut(s)	1382
BstC8I	GCNNGC	5 cut(s)	130, 518, 738, 925, 1318
BstDEI	CTNAG	7 cut(s)	297, 404, 465, 627, 639, 823, 1090
BstDSI	CCRYGG	1 cut(s)	382
BstF5I	GGATG	2 cut(s)	679, 715
BstFNI	CGCG	1 cut(s)	1258
BstHHI	GCGC	3 cut(s)	559, 1237, 1258
BstKTI	GATC	8 cut(s)	253, 268, 316, 418, 438, 865, 1182, 1222
BstMAI	GTCTC	5 cut(s)	394, 571, 661, 1119, 1369
BstMBI	GATC	8 cut(s)	250, 265, 313, 415, 435, 862, 1179, 1219
BstMWI	GCNNNNNNNGC	7 cut(s)	449, 522, 554, 649, 1208, 1253, 1313
BstNI	CCWGG	3 cut(s)	947, 1122, 1226
BstSCI	CCNGG	3 cut(s)	945, 1120, 1224
BstSFI	CTRYAG	1 cut(s)	618
BstUI	CGCG	1 cut(s)	1258
BstV1I	GCAGC	2 cut(s)	1259, 1316
BstV2I	GAAGAC	2 cut(s)	14, 906
BstX2I	RGATCY	2 cut(s)	265, 1219
BstXI	CCANNNNNNTGG	1 cut(s)	877
BstYI	RGATCY	2 cut(s)	265, 1219
BsuRI	GGCC	2 cut(s)	224, 695
BtgI	CCRYGG	1 cut(s)	382
BtsCI	GGATG	2 cut(s)	679, 715
BtsIMutI	CAGTG	4 cut(s)	348, 696, 831, 1104
BveI	ACCTGC	1 cut(s)	782
Cac8I	GCNNGC	5 cut(s)	130, 518, 738, 925, 1318
CfoI	GCGC	3 cut(s)	559, 1237, 1258
Cfr13I	GGNCC	2 cut(s)	218, 374
Csp6I	GTAC	3 cut(s)	88, 636, 1168
CviAII	CATG	3 cut(s)	956, 985, 1034
CviQI	GTAC	3 cut(s)	88, 636, 1168
DdeI	CTNAG	7 cut(s)	297, 404, 465, 627, 639, 823, 1090
DpnI	GATC	8 cut(s)	252, 267, 315, 417, 437, 864, 1181, 1221
DpnII	GATC	8 cut(s)	250, 265, 313, 415, 435, 862, 1179, 1219
DraIII	CACNNNGTG	1 cut(s)	1204
Eam1104I	CTCTTC	2 cut(s)	490, 726
EarI	CTCTTC	2 cut(s)	490, 726
Eco32I	GATATC	1 cut(s)	242
Eco47I	GGWCC	2 cut(s)	218, 374
Eco57I	CTGAAG	4 cut(s)	8, 668, 750, 1306
Eco88I	CYCGRG	2 cut(s)	658, 804
EcoRII	CCWGG	3 cut(s)	945, 1120, 1224
EcoRV	GATATC	1 cut(s)	242
Esp3I	CGTCTC	1 cut(s)	1119
FaeI	CATG	3 cut(s)	959, 988, 1037
FaqI	GGGAC	1 cut(s)	963
FatI	CATG	3 cut(s)	955, 984, 1033
FauI	CCCGC	1 cut(s)	971
FblI	GTMKAC	1 cut(s)	431
Fnu4HI	GCNGC	4 cut(s)	624, 1248, 1305, 1377
FokI	GGATG	2 cut(s)	666, 722
Fsp4HI	GCNGC	4 cut(s)	624, 1248, 1305, 1377
FspBI	CTAG	2 cut(s)	93, 129
GlaI	GCGC	3 cut(s)	558, 1236, 1257
GluI	GCNGC	4 cut(s)	624, 1248, 1305, 1377
GsaI	CCCAGC	1 cut(s)	552
GsuI	CTGGAG	3 cut(s)	387, 1079, 1143
HaeIII	GGCC	2 cut(s)	224, 695
HapII	CCGG	1 cut(s)	221
HhaI	GCGC	3 cut(s)	559, 1237, 1258
Hin1I	GRCGYC	1 cut(s)	1128
Hin1II	CATG	3 cut(s)	959, 988, 1037
Hin6I	GCGC	3 cut(s)	557, 1235, 1256
HinP1I	GCGC	3 cut(s)	557, 1235, 1256
HindIII	AAGCTT	2 cut(s)	650, 1340
HinfI	GANTC	6 cut(s)	163, 390, 402, 484, 605, 614
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	1 cut(s)	1039
Hpy166II	GTNNAC	3 cut(s)	90, 432, 1198
Hpy188I	TCNGA	7 cut(s)	27, 136, 265, 407, 613, 648, 1325
Hpy188III	TCNNGA	6 cut(s)	189, 366, 683, 806, 995, 1297
Hpy8I	GTNNAC	3 cut(s)	90, 432, 1198
HpyAV	CCTTC	3 cut(s)	216, 992, 1385
HpyCH4III	ACNGT	5 cut(s)	383, 1009, 1108, 1334, 1357
HpyCH4IV	ACGT	1 cut(s)	1128
HpyCH4V	TGCA	8 cut(s)	520, 713, 791, 833, 897, 927, 959, 1247
HpyF10VI	GCNNNNNNNGC	7 cut(s)	449, 522, 554, 649, 1208, 1253, 1313
HpyF3I	CTNAG	7 cut(s)	297, 404, 465, 627, 639, 823, 1090
HpySE526I	ACGT	1 cut(s)	1128
Hsp92I	GRCGYC	1 cut(s)	1128
Hsp92II	CATG	3 cut(s)	959, 988, 1037
HspAI	GCGC	3 cut(s)	557, 1235, 1256
Kzo9I	GATC	8 cut(s)	250, 265, 313, 415, 435, 862, 1179, 1219
LguI	GCTCTTC	1 cut(s)	726
LmnI	GCTCC	2 cut(s)	808, 1123
Lsp1109I	GCAGC	2 cut(s)	1259, 1316
LweI	GCATC	5 cut(s)	688, 700, 778, 936, 1303
MaeI	CTAG	2 cut(s)	93, 129
MaeII	ACGT	1 cut(s)	1128
MaeIII	GTNAC	4 cut(s)	3, 583, 794, 1228
MalI	GATC	8 cut(s)	252, 267, 315, 417, 437, 864, 1181, 1221
MboI	GATC	8 cut(s)	250, 265, 313, 415, 435, 862, 1179, 1219
MboII	GAAGA	9 cut(s)	14, 399, 507, 600, 743, 906, 1080, 1252, 1400
MflI	RGATCY	2 cut(s)	265, 1219
MhlI	GDGCHC	1 cut(s)	1270
MluCI	AATT	2 cut(s)	58, 964
MlyI	GAGTC	1 cut(s)	396
MnlI	CCTC	9 cut(s)	74, 153, 401, 452, 491, 506, 654, 685, 700
MroXI	GAANNNNTTC	1 cut(s)	21
MseI	TTAA	3 cut(s)	36, 150, 938
MspA1I	CMGCKG	3 cut(s)	548, 978, 1057
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	3 cut(s)	947, 1122, 1226
Mva1269I	GAATGC	2 cut(s)	559, 835
MvaI	CCWGG	3 cut(s)	947, 1122, 1226
MvnI	CGCG	1 cut(s)	1258
MwoI	GCNNNNNNNGC	7 cut(s)	449, 522, 554, 649, 1208, 1253, 1313
NdeII	GATC	8 cut(s)	250, 265, 313, 415, 435, 862, 1179, 1219
NheI	GCTAGC	1 cut(s)	128
NlaIII	CATG	3 cut(s)	959, 988, 1037
NlaIV	GGNNCC	1 cut(s)	267
NspV	TTCGAA	1 cut(s)	1382
PciSI	GCTCTTC	1 cut(s)	726
PcsI	WCGNNNNNNNCGW	1 cut(s)	440
PctI	GAATGC	2 cut(s)	559, 835
PdmI	GAANNNNTTC	1 cut(s)	21
PfeI	GAWTC	5 cut(s)	163, 390, 484, 605, 614
PfoI	TCCNGGA	1 cut(s)	1120
PkrI	GCNGC	4 cut(s)	625, 1249, 1306, 1378
PleI	GAGTC	1 cut(s)	396
PpsI	GAGTC	1 cut(s)	396
Psp6I	CCWGG	3 cut(s)	945, 1120, 1224
PspFI	CCCAGC	1 cut(s)	548
PspGI	CCWGG	3 cut(s)	945, 1120, 1224
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	2 cut(s)	218, 374
PsuI	RGATCY	2 cut(s)	265, 1219
PvuII	CAGCTG	2 cut(s)	548, 1057
RsaI	GTAC	3 cut(s)	89, 637, 1169
RsaNI	GTAC	3 cut(s)	88, 636, 1168
SapI	GCTCTTC	1 cut(s)	726
SaqAI	TTAA	3 cut(s)	36, 150, 938
SatI	GCNGC	4 cut(s)	624, 1248, 1305, 1377
Sau3AI	GATC	8 cut(s)	250, 265, 313, 415, 435, 862, 1179, 1219
Sau96I	GGNCC	2 cut(s)	218, 374
SchI	GAGTC	1 cut(s)	396
ScrFI	CCNGG	3 cut(s)	947, 1122, 1226
SduI	GDGCHC	1 cut(s)	1270
SfaNI	GCATC	5 cut(s)	688, 700, 778, 936, 1303
SfcI	CTRYAG	1 cut(s)	618
SfuI	TTCGAA	1 cut(s)	1382
SinI	GGWCC	2 cut(s)	218, 374
Sse9I	AATT	2 cut(s)	58, 964
SsiI	CCGC	4 cut(s)	623, 677, 978, 1376
SspMI	CTAG	2 cut(s)	93, 129
StyD4I	CCNGG	3 cut(s)	945, 1120, 1224
TaaI	ACNGT	5 cut(s)	383, 1009, 1108, 1334, 1357
TaiI	ACGT	1 cut(s)	1131
TaqI	TCGA	4 cut(s)	190, 857, 1298, 1382
TasI	AATT	2 cut(s)	58, 964
TatI	WGTACW	3 cut(s)	87, 635, 1167
TauI	GCSGC	2 cut(s)	626, 1379
TfiI	GAWTC	5 cut(s)	163, 390, 484, 605, 614
Tru1I	TTAA	3 cut(s)	36, 150, 938
Tru9I	TTAA	3 cut(s)	36, 150, 938
TscAI	CASTG	4 cut(s)	355, 703, 831, 1111
TseI	GCWGC	2 cut(s)	1247, 1304
TspDTI	ATGAA	2 cut(s)	944, 973
TspGWI	ACGGA	2 cut(s)	258, 1004
TspRI	CASTG	4 cut(s)	355, 703, 831, 1111
VpaK11BI	GGWCC	2 cut(s)	218, 374
XapI	RAATTY	1 cut(s)	58
XmiI	GTMKAC	1 cut(s)	431
XmnI	GAANNNNTTC	1 cut(s)	21
XspI	CTAG	2 cut(s)	93, 129
ZraI	GACGTC	1 cut(s)	1129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.