Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008377

Physical Location & Seq

Genomic Coordinates Reverse (-)

1903983 .. 1905264

Gene Structure 1282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g02600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGCCATCTTCTTACTTGTCGAAGATTAGGACTGCGTTGCAGAGATCGATTGTTGGGCAGGAAGGAGCGCTTCAGGAATCGGTAGATCGGTTAATTGGGCAGGGAAAATTGTTGTTTGGAAATTCTAAGTTGTTCCAGTCGAGACCGTTTTCAACTATTTCAGACCTCCAAGCATTGTTTTCACCAGGCATTGTTTTTGCTGCGAGGTTGGATTCGCAGCTAGTTAATAAAAGAAGGAACATTTCTGTTGTTGAAGAGATTTCGCGCATTATTTCAACCCCGTCTGTGTCAGGGCCTTCAATTCAGGTTTGTGGGTATCATATCGATTGTGCGCTTTCTGAGCCCAGTCAGTTTGTGACCAGAAGTAAGTTTCAGAATAAACCTATGGCTGCTTGCGGTTCTAGAACTTTATTTGGGGGATGCTGCCCAGATAATTTAACTTCAAGGCATGGGCTTCATGCAATGGTACCCGAAAGTGCCTGTACATTATACAACAAAAGAAGTTTGGACTGTTTTCAAACAGCTAGCATGAGTTTGAAAACAAGTGGGCAGTCCAACACTAATGCAATTTATGGGTATTTCATGTATGAAGTTGGAAAGAGATGGTGTAATTCCGCCCCAAGTAAAGGATCAGGGTCAAGAGAATTTCATGGTTCATCAACATGCTCATCTACAAGGACTGCCCATGACGTGTCTTTCGATAGTTCTGCTCATGAAGGGCAAGTTTCAAGTTCTAAAGTTAGCTTCACAATTAGAAGATTACAGATGGAAAGTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C_2 SpoIIE

Protein Analysis

260

Amino Acids

28.21

Weight (kDa)

9.31

Isoelectric Point (pI)

70.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16580
fragaria_vesca	FvH4_2g40080 FvH4_2g40080 FvH4_2g40080 FvH4_2g40080
malus_domestica	MD08G1032700.v1.1 MD15G1029400.v1.1
prunus_persica	Prupe.1G382000_v2.0.a1 Prupe.1G382000_v2.0.a1 Prupe.1G382000_v2.0.a1
pyrus_communis	pycom08g02600
rosa_chinensis	RchiOBHm_Chr6g0300681
rosa_laevigata	RLG00000011312
rosa_multiflora	Rmu_sc0004226.1_g000013 Rmu_sc0014374.1_g000003
rosa_roxburghii	Rroxscaffold_7G00167520
rosa_rugosa	Rorug06G0298200
rosa_samantha	Rh6AG411000 Rh6BG418200 Rh6CG425700 Rh6DG411100
rosa_wichuraiana	Rw0G002180 Rw6G035960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	466
AccB1I	GGYRCC	1 cut(s)	466
AccII	CGCG	1 cut(s)	265
AciI	CCGC	2 cut(s)	396, 615
AclWI	GGATC	1 cut(s)	637
AcsI	RAATTY	2 cut(s)	121, 644
AcuI	CTGAAG	1 cut(s)	56
AfaI	GTAC	2 cut(s)	468, 484
AfeI	AGCGCT	1 cut(s)	69
AfiI	CCNNNNNNNGG	1 cut(s)	626
AflIII	ACRYGT	1 cut(s)	690
AgsI	TTSAA	8 cut(s)	153, 254, 276, 300, 444, 518, 538, 729
AjiI	CACGTC	1 cut(s)	691
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	3 cut(s)	220, 524, 744
AluI	AGCT	3 cut(s)	220, 524, 744
Alw26I	GTCTC	1 cut(s)	136
AlwI	GGATC	1 cut(s)	637
Aor51HI	AGCGCT	1 cut(s)	69
AoxI	GGCC	1 cut(s)	293
ApeKI	GCWGC	4 cut(s)	200, 217, 389, 423
ApoI	RAATTY	2 cut(s)	121, 644
ArsI	GACNNNNNNTTYG	2 cut(s)	680, 712
Asp718I	GGTACC	1 cut(s)	466
AspLEI	GCGC	3 cut(s)	70, 267, 334
AspS9I	GGNCC	1 cut(s)	293
AsuHPI	GGTGA	1 cut(s)	174
AsuNHI	GCTAGC	1 cut(s)	524
BanI	GGYRCC	1 cut(s)	466
BanII	GRGCYC	1 cut(s)	345
BbvI	GCAGC	4 cut(s)	187, 229, 376, 410
BccI	CCATC	3 cut(s)	13, 597, 760
BcgI	CGANNNNNNTGC	2 cut(s)	689, 723
BciT130I	CCWGG	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	136
BfaI	CTAG	3 cut(s)	221, 402, 525
BfoI	RGCGCY	1 cut(s)	71
BisI	GCNGC	4 cut(s)	201, 218, 390, 424
BlsI	GCNGC	4 cut(s)	202, 219, 391, 425
Bme1390I	CCNGG	1 cut(s)	186
BmgBI	CACGTC	1 cut(s)	691
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	1 cut(s)	468
BmrFI	CCNGG	1 cut(s)	186
BmrI	ACTGGG	1 cut(s)	339
BmsI	GCATC	1 cut(s)	410
BmtI	GCTAGC	1 cut(s)	528
BmuI	ACTGGG	1 cut(s)	339
Bsa29I	ATCGAT	2 cut(s)	47, 324
BsaI	GGTCTC	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	1 cut(s)	626
Bse1I	ACTGG	2 cut(s)	136, 345
Bse3DI	GCAATG	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	186
BseCI	ATCGAT	2 cut(s)	47, 324
BseGI	GGATG	1 cut(s)	425
BseLI	CCNNNNNNNGG	1 cut(s)	626
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	2 cut(s)	136, 345
BseXI	GCAGC	4 cut(s)	187, 229, 376, 410
Bsh1236I	CGCG	1 cut(s)	265
BshFI	GGCC	1 cut(s)	295
BshNI	GGYRCC	1 cut(s)	466
BshVI	ATCGAT	2 cut(s)	47, 324
BslFI	GGGAC	1 cut(s)	759
BslI	CCNNNNNNNGG	1 cut(s)	626
BsmAI	GTCTC	1 cut(s)	136
BsmFI	GGGAC	1 cut(s)	759
BsnI	GGCC	1 cut(s)	295
Bso31I	GGTCTC	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp1407I	TGTACA	1 cut(s)	482
Bsp143I	GATC	3 cut(s)	44, 85, 629
BspACI	CCGC	2 cut(s)	396, 615
BspANI	GGCC	1 cut(s)	295
BspCNI	CTCAG	1 cut(s)	331
BspDI	ATCGAT	2 cut(s)	47, 324
BspFNI	CGCG	1 cut(s)	265
BspHI	TCATGA	1 cut(s)	712
BspLI	GGNNCC	1 cut(s)	468
BspOI	GCTAGC	1 cut(s)	528
BspPI	GGATC	1 cut(s)	637
BspT107I	GGYRCC	1 cut(s)	466
BspTNI	GGTCTC	1 cut(s)	136
BsrDI	GCAATG	1 cut(s)	468
BsrGI	TGTACA	1 cut(s)	482
BsrI	ACTGG	2 cut(s)	136, 345
BssMI	GATC	3 cut(s)	44, 85, 629
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	2 cut(s)	147, 512
Bst6I	CTCTTC	1 cut(s)	249
BstAUI	TGTACA	1 cut(s)	482
BstC8I	GCNNGC	2 cut(s)	394, 526
BstDEI	CTNAG	2 cut(s)	126, 339
BstF5I	GGATG	1 cut(s)	425
BstFNI	CGCG	1 cut(s)	265
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	3 cut(s)	70, 267, 334
BstKTI	GATC	3 cut(s)	47, 88, 632
BstMAI	GTCTC	1 cut(s)	136
BstMBI	GATC	3 cut(s)	44, 85, 629
BstMWI	GCNNNNNNNGC	1 cut(s)	340
BstNI	CCWGG	1 cut(s)	186
BstNSI	RCATGY	1 cut(s)	666
BstSCI	CCNGG	1 cut(s)	184
BstUI	CGCG	1 cut(s)	265
BstV1I	GCAGC	4 cut(s)	187, 229, 376, 410
Bsu15I	ATCGAT	2 cut(s)	47, 324
BsuRI	GGCC	1 cut(s)	295
BsuTUI	ATCGAT	2 cut(s)	47, 324
BtrI	CACGTC	1 cut(s)	691
BtsCI	GGATG	1 cut(s)	425
Cac8I	GCNNGC	2 cut(s)	394, 526
CciI	TCATGA	1 cut(s)	712
CfoI	GCGC	3 cut(s)	70, 267, 334
Cfr13I	GGNCC	1 cut(s)	293
ClaI	ATCGAT	2 cut(s)	47, 324
Csp6I	GTAC	2 cut(s)	467, 483
CviAII	CATG	8 cut(s)	449, 458, 529, 583, 650, 663, 686, 713
CviJI	RGCY	7 cut(s)	220, 295, 343, 389, 454, 524, 744
CviKI_1	RGCY	7 cut(s)	220, 295, 343, 389, 454, 524, 744
CviQI	GTAC	2 cut(s)	467, 483
DdeI	CTNAG	2 cut(s)	126, 339
DpnI	GATC	3 cut(s)	46, 87, 631
DpnII	GATC	3 cut(s)	44, 85, 629
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
EciI	GGCGGA	1 cut(s)	604
Eco24I	GRGCYC	1 cut(s)	345
Eco31I	GGTCTC	1 cut(s)	136
Eco47III	AGCGCT	1 cut(s)	69
Eco57I	CTGAAG	1 cut(s)	56
EcoO109I	RGGNCCY	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	184
EcoT38I	GRGCYC	1 cut(s)	345
FaeI	CATG	8 cut(s)	452, 461, 532, 586, 653, 666, 689, 716
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FaqI	GGGAC	1 cut(s)	759
FatI	CATG	8 cut(s)	448, 457, 528, 582, 649, 662, 685, 712
Fnu4HI	GCNGC	4 cut(s)	201, 218, 390, 424
FokI	GGATG	1 cut(s)	432
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	4 cut(s)	201, 218, 390, 424
FspBI	CTAG	3 cut(s)	221, 402, 525
GlaI	GCGC	3 cut(s)	69, 266, 333
GluI	GCNGC	4 cut(s)	201, 218, 390, 424
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	1 cut(s)	295
HhaI	GCGC	3 cut(s)	70, 267, 334
Hin1II	CATG	8 cut(s)	452, 461, 532, 586, 653, 666, 689, 716
Hin6I	GCGC	3 cut(s)	68, 265, 332
HinP1I	GCGC	3 cut(s)	68, 265, 332
HinfI	GANTC	2 cut(s)	77, 212
HphI	GGTGA	1 cut(s)	174
Hpy188I	TCNGA	3 cut(s)	163, 340, 375
Hpy188III	TCNNGA	5 cut(s)	74, 141, 402, 639, 713
HpyAV	CCTTC	4 cut(s)	56, 228, 306, 710
HpyCH4III	ACNGT	2 cut(s)	147, 512
HpyCH4IV	ACGT	1 cut(s)	690
HpyCH4V	TGCA	3 cut(s)	40, 461, 566
HpyF10VI	GCNNNNNNNGC	1 cut(s)	340
HpyF3I	CTNAG	2 cut(s)	126, 339
HpySE526I	ACGT	1 cut(s)	690
Hsp92II	CATG	8 cut(s)	452, 461, 532, 586, 653, 666, 689, 716
HspAI	GCGC	3 cut(s)	68, 265, 332
KpnI	GGTACC	1 cut(s)	470
Kzo9I	GATC	3 cut(s)	44, 85, 629
LmnI	GCTCC	1 cut(s)	65
Lsp1109I	GCAGC	4 cut(s)	187, 229, 376, 410
LweI	GCATC	1 cut(s)	410
MaeI	CTAG	3 cut(s)	221, 402, 525
MaeII	ACGT	1 cut(s)	690
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	3 cut(s)	46, 87, 631
MboI	GATC	3 cut(s)	44, 85, 629
MboII	GAAGA	3 cut(s)	34, 266, 768
MhlI	GDGCHC	1 cut(s)	345
MluCI	AATT	9 cut(s)	93, 107, 121, 300, 433, 567, 610, 644, 750
MmeI	TCCRAC	3 cut(s)	189, 574, 579
MnlI	CCTC	2 cut(s)	176, 198
MseI	TTAA	3 cut(s)	92, 225, 437
MslI	CAYNNNNRTG	1 cut(s)	661
MspR9I	CCNGG	1 cut(s)	186
MvaI	CCWGG	1 cut(s)	186
MvnI	CGCG	1 cut(s)	265
MwoI	GCNNNNNNNGC	1 cut(s)	340
NdeII	GATC	3 cut(s)	44, 85, 629
NheI	GCTAGC	1 cut(s)	524
NlaIII	CATG	8 cut(s)	452, 461, 532, 586, 653, 666, 689, 716
NlaIV	GGNNCC	1 cut(s)	468
NmuCI	GTSAC	1 cut(s)	355
NspI	RCATGY	1 cut(s)	666
PagI	TCATGA	1 cut(s)	712
PcsI	WCGNNNNNNNCGW	1 cut(s)	696
PfeI	GAWTC	2 cut(s)	77, 212
PkrI	GCNGC	4 cut(s)	202, 219, 391, 425
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	1 cut(s)	468
PspPI	GGNCC	1 cut(s)	293
RsaI	GTAC	2 cut(s)	468, 484
RsaNI	GTAC	2 cut(s)	467, 483
RseI	CAYNNNNRTG	1 cut(s)	661
SaqAI	TTAA	3 cut(s)	92, 225, 437
SatI	GCNGC	4 cut(s)	201, 218, 390, 424
Sau3AI	GATC	3 cut(s)	44, 85, 629
Sau96I	GGNCC	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	186
SduI	GDGCHC	1 cut(s)	345
SetI	ASST	8 cut(s)	168, 209, 222, 309, 385, 526, 693, 746
SfaNI	GCATC	1 cut(s)	410
SmiMI	CAYNNNNRTG	1 cut(s)	661
Sse9I	AATT	9 cut(s)	93, 107, 121, 300, 433, 567, 610, 644, 750
SsiI	CCGC	2 cut(s)	396, 615
SspMI	CTAG	3 cut(s)	221, 402, 525
StyD4I	CCNGG	1 cut(s)	184
TaaI	ACNGT	2 cut(s)	147, 512
TaiI	ACGT	1 cut(s)	693
TaqI	TCGA	5 cut(s)	20, 47, 140, 324, 699
TasI	AATT	9 cut(s)	93, 107, 121, 300, 433, 567, 610, 644, 750
TatI	WGTACW	1 cut(s)	482
TfiI	GAWTC	2 cut(s)	77, 212
Tru1I	TTAA	3 cut(s)	92, 225, 437
Tru9I	TTAA	3 cut(s)	92, 225, 437
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	4 cut(s)	200, 217, 389, 423
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	6 cut(s)	446, 571, 603, 638, 645, 729
XapI	RAATTY	2 cut(s)	121, 644
XbaI	TCTAGA	1 cut(s)	401
XceI	RCATGY	1 cut(s)	666
XspI	CTAG	3 cut(s)	221, 402, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.