Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0008377

Physical Location & Seq

Genomic Coordinates Reverse (-)

60769779 .. 60773110

Gene Structure 3332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG411000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGCCATCTTCTTATTTATCGAAGCTTAGGACTGCAGTACAGAGGTCGATTGTAGGCCAGGAAGGTGTTGTTCACGACTCGCTAGAGGGTCTAATTGGGCAAGGCAAATTGTTGTTTGGAAATTCTAGGCTGTTCCATTCGAGACCCTTTTCGGTTATTTCAGACCTGAATGCATTTCTGCCGCCGGGCACTGTTGTTGCTGCAAGGTCGGATTCGCAGTTAGTTAACCAGAGGAAGCAGATTTCTGTTGTTGGGGAGATTTCGCGGATCATTTCAACTCCATCTGTGTCGGGGCCTTCGTTCCAAGTTTGTGGGTATCATATTGATTCTGTGCTTTCGGATCCCAGTCAGTTTCAGACTAAAGCCATGGCTTTGTGCGGTTCGAGAGCTTTAGTTGGGGGGTGTTCCCCGGATACTTTAACATCAAGGCGCGGGCTGCTTTCATTTTTACCTGAAGGTGCTTGTACATTTTATAATAACAGAAGTAAAAGATCTGATGGTTGCCAGAAAGCAAGCATGAGTTTGAAGAACAAAGGGCCTCCCAACACTAATGCAACTTATGGATATTTCGTATATGAAGTTGGGAAGAGATGGTGTAGTAACTTCCCAATAAATGGATTAGGCTCGAGAGAATTTCATAACTCTTCCACATGCTTCTCTGCTGGGACTGCCCACGATGTGTCTTTTGATAATTCTGCTCCTGAGGAGCAGCTTTCAAGTTCTACAGATTCATCGGATCAGAAGAACACAGATGCAAAGCCCTTAAAACTAAGTTCAGGATCATGCTACCTGCCCCATCCTGATAAAGAGGACACTGGCGGGGAGGATGCTCACTTCATATGTGTGAATGAACAAGCAATAGGGGTGGCAGATGGTGTTGGTGGCTGGGCAGATCATGGTGTTAACTCAGGATTGTATTCCCGAGAACTGATGTCTAATTCTGTAACAGCTGTTCAGGAGGAACCCAAAGGTTCAGTTGATCCTGCTAGGGTGTTGGAGAAAGCTCACTCCAGCACAAAAGCCAGAGGTTCCTCAACAGCATGCATCATAGCACTCACAGAACAGGTTTGGAAATTGCTTTTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C_2 SpoIIE

Protein Analysis

362

Amino Acids

38.73

Weight (kDa)

7.09

Isoelectric Point (pI)

48.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16580
fragaria_vesca	FvH4_2g40080 FvH4_2g40080 FvH4_2g40080 FvH4_2g40080
malus_domestica	MD08G1032700.v1.1 MD15G1029400.v1.1
prunus_persica	Prupe.1G382000_v2.0.a1 Prupe.1G382000_v2.0.a1 Prupe.1G382000_v2.0.a1
pyrus_communis	pycom08g02600
rosa_chinensis	RchiOBHm_Chr6g0300681
rosa_laevigata	RLG00000011312
rosa_multiflora	Rmu_sc0004226.1_g000013 Rmu_sc0014374.1_g000003
rosa_roxburghii	Rroxscaffold_7G00167520
rosa_rugosa	Rorug06G0298200
rosa_samantha	Rh6AG411000 Rh6BG418200 Rh6CG425700 Rh6DG411100
rosa_wichuraiana	Rw0G002180 Rw6G035960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	474
Acc36I	ACCTGC	1 cut(s)	798
AccB7I	CCANNNNNTGG	1 cut(s)	614
AccII	CGCG	2 cut(s)	265, 432
AciI	CCGC	5 cut(s)	182, 265, 378, 432, 819
AclWI	GGATC	6 cut(s)	275, 335, 348, 744, 787, 974
AcsI	RAATTY	2 cut(s)	121, 632
AcuI	CTGAAG	1 cut(s)	474
AdeI	CACNNNGTG	1 cut(s)	679
AfaI	GTAC	2 cut(s)	39, 466
AfiI	CCNNNNNNNGG	1 cut(s)	614
AgsI	TTSAA	3 cut(s)	276, 526, 717
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	5 cut(s)	25, 389, 712, 950, 1004
AluI	AGCT	5 cut(s)	25, 389, 712, 950, 1004
Alw26I	GTCTC	1 cut(s)	136
AlwI	GGATC	6 cut(s)	275, 335, 348, 744, 787, 974
Ama87I	CYCGRG	2 cut(s)	625, 921
AoxI	GGCC	3 cut(s)	55, 293, 536
ApeKI	GCWGC	3 cut(s)	200, 436, 709
ApoI	RAATTY	2 cut(s)	121, 632
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	2 cut(s)	293, 536
AsuC2I	CCSGG	2 cut(s)	186, 410
AvaI	CYCGRG	2 cut(s)	625, 921
AxyI	CCTNAGG	1 cut(s)	702
BaeGI	GKGCMC	1 cut(s)	191
BamHI	GGATCC	1 cut(s)	340
BbvI	GCAGC	3 cut(s)	187, 423, 721
BccI	CCATC	6 cut(s)	13, 289, 491, 585, 804, 866
BciT130I	CCWGG	1 cut(s)	59
BciVI	GTATCC	1 cut(s)	406
BcnI	CCSGG	2 cut(s)	186, 410
BcoDI	GTCTC	1 cut(s)	136
BfaI	CTAG	3 cut(s)	83, 126, 987
BfmI	CTRYAG	2 cut(s)	33, 723
BfuAI	ACCTGC	1 cut(s)	798
BfuI	GTATCC	1 cut(s)	406
BglII	AGATCT	1 cut(s)	491
BisI	GCNGC	4 cut(s)	182, 201, 437, 710
BlsI	GCNGC	4 cut(s)	183, 202, 438, 711
Bme1390I	CCNGG	3 cut(s)	59, 186, 410
BmeT110I	CYCGRG	2 cut(s)	625, 921
BmgT120I	GGNCC	2 cut(s)	293, 536
BmiI	GGNNCC	4 cut(s)	294, 342, 963, 1030
BmrFI	CCNGG	3 cut(s)	59, 186, 410
BmrI	ACTGGG	1 cut(s)	339
BmsI	GCATC	3 cut(s)	742, 817, 1053
BmuI	ACTGGG	1 cut(s)	339
BpmI	CTGGAG	1 cut(s)	994
Bpu10I	CCTNAGC	1 cut(s)	26
BpuMI	CCSGG	2 cut(s)	186, 410
BsaI	GGTCTC	1 cut(s)	136
BsaJI	CCNNGG	2 cut(s)	366, 408
Bsc4I	CCNNNNNNNGG	1 cut(s)	614
Bse1I	ACTGG	2 cut(s)	345, 820
Bse21I	CCTNAGG	1 cut(s)	702
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	2 cut(s)	366, 408
BseGI	GGATG	2 cut(s)	796, 832
BseLI	CCNNNNNNNGG	1 cut(s)	614
BseMII	CTCAG	2 cut(s)	693, 921
BseNI	ACTGG	2 cut(s)	345, 820
BseRI	GAGGAG	1 cut(s)	719
BseSI	GKGCMC	1 cut(s)	191
BseXI	GCAGC	3 cut(s)	187, 423, 721
BseYI	CCCAGC	2 cut(s)	662, 885
Bsh1236I	CGCG	2 cut(s)	265, 432
BshFI	GGCC	3 cut(s)	57, 295, 538
BsiHKCI	CYCGRG	2 cut(s)	625, 921
BsiSI	CCGG	2 cut(s)	185, 410
BslFI	GGGAC	1 cut(s)	679
BslI	CCNNNNNNNGG	1 cut(s)	614
BsmAI	GTCTC	1 cut(s)	136
BsmFI	GGGAC	1 cut(s)	679
BsmI	GAATGC	1 cut(s)	175
BsnI	GGCC	3 cut(s)	57, 295, 538
Bso31I	GGTCTC	1 cut(s)	136
BsoBI	CYCGRG	2 cut(s)	625, 921
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp1407I	TGTACA	1 cut(s)	464
Bsp143I	GATC	7 cut(s)	267, 340, 491, 736, 779, 892, 979
Bsp19I	CCATGG	1 cut(s)	366
BspACI	CCGC	5 cut(s)	182, 265, 378, 432, 819
BspANI	GGCC	3 cut(s)	57, 295, 538
BspCNI	CTCAG	2 cut(s)	694, 920
BspFNI	CGCG	2 cut(s)	265, 432
BspLI	GGNNCC	4 cut(s)	294, 342, 963, 1030
BspMAI	CTGCAG	1 cut(s)	37
BspMI	ACCTGC	1 cut(s)	798
BspPI	GGATC	6 cut(s)	275, 335, 348, 744, 787, 974
BspTNI	GGTCTC	1 cut(s)	136
BsrGI	TGTACA	1 cut(s)	464
BsrI	ACTGG	2 cut(s)	345, 820
BssECI	CCNNGG	2 cut(s)	366, 408
BssMI	GATC	7 cut(s)	267, 340, 491, 736, 779, 892, 979
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	193
Bst6I	CTCTTC	2 cut(s)	581, 649
BstAUI	TGTACA	1 cut(s)	464
BstC8I	GCNNGC	3 cut(s)	434, 514, 1042
BstDEI	CTNAG	4 cut(s)	26, 702, 770, 907
BstDSI	CCRYGG	1 cut(s)	366
BstF5I	GGATG	2 cut(s)	796, 832
BstFNI	CGCG	2 cut(s)	265, 432
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	7 cut(s)	270, 343, 494, 739, 782, 895, 982
BstMAI	GTCTC	1 cut(s)	136
BstMBI	GATC	7 cut(s)	267, 340, 491, 736, 779, 892, 979
BstMWI	GCNNNNNNNGC	2 cut(s)	436, 668
BstNI	CCWGG	1 cut(s)	59
BstNSI	RCATGY	2 cut(s)	654, 1044
BstSCI	CCNGG	3 cut(s)	57, 184, 408
BstSFI	CTRYAG	2 cut(s)	33, 723
BstSLI	GKGCMC	1 cut(s)	191
BstUI	CGCG	2 cut(s)	265, 432
BstV1I	GCAGC	3 cut(s)	187, 423, 721
BstX2I	RGATCY	2 cut(s)	340, 491
BstXI	CCANNNNNNTGG	1 cut(s)	311
BstYI	RGATCY	2 cut(s)	340, 491
Bsu36I	CCTNAGG	1 cut(s)	702
BsuI	GTATCC	1 cut(s)	406
BsuRI	GGCC	3 cut(s)	57, 295, 538
BtgI	CCRYGG	1 cut(s)	366
BtsCI	GGATG	2 cut(s)	796, 832
BtsIMutI	CAGTG	2 cut(s)	189, 813
BveI	ACCTGC	1 cut(s)	798
Cac8I	GCNNGC	3 cut(s)	434, 514, 1042
CfoI	GCGC	1 cut(s)	432
Cfr13I	GGNCC	2 cut(s)	293, 536
Csp6I	GTAC	2 cut(s)	38, 465
CspCI	CAANNNNNGTGG	2 cut(s)	846, 881
CviAII	CATG	6 cut(s)	367, 517, 651, 783, 896, 1041
CviQI	GTAC	2 cut(s)	38, 465
DdeI	CTNAG	4 cut(s)	26, 702, 770, 907
DpnI	GATC	7 cut(s)	269, 342, 493, 738, 781, 894, 981
DpnII	GATC	7 cut(s)	267, 340, 491, 736, 779, 892, 979
DraIII	CACNNNGTG	1 cut(s)	679
Eam1104I	CTCTTC	2 cut(s)	581, 649
EarI	CTCTTC	2 cut(s)	581, 649
Eco130I	CCWWGG	1 cut(s)	366
Eco31I	GGTCTC	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	474
Eco81I	CCTNAGG	1 cut(s)	702
Eco88I	CYCGRG	2 cut(s)	625, 921
EcoO109I	RGGNCCY	2 cut(s)	293, 536
EcoRII	CCWGG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	366
EcoT22I	ATGCAT	2 cut(s)	175, 1046
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	6 cut(s)	370, 520, 654, 786, 899, 1044
FaqI	GGGAC	1 cut(s)	679
FatI	CATG	6 cut(s)	366, 516, 650, 782, 895, 1040
FauI	CCCGC	2 cut(s)	425, 812
FauNDI	CATATG	1 cut(s)	839
Fnu4HI	GCNGC	4 cut(s)	182, 201, 437, 710
FokI	GGATG	2 cut(s)	783, 839
Fsp4HI	GCNGC	4 cut(s)	182, 201, 437, 710
FspBI	CTAG	3 cut(s)	83, 126, 987
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	4 cut(s)	182, 201, 437, 710
GsaI	CCCAGC	2 cut(s)	666, 889
GsuI	CTGGAG	1 cut(s)	994
HaeIII	GGCC	3 cut(s)	57, 295, 538
HapII	CCGG	2 cut(s)	185, 410
HhaI	GCGC	1 cut(s)	432
Hin1II	CATG	6 cut(s)	370, 520, 654, 786, 899, 1044
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HincII	GTYRAC	2 cut(s)	226, 904
HindII	GTYRAC	2 cut(s)	226, 904
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	4 cut(s)	77, 212, 326, 728
HpaI	GTTAAC	2 cut(s)	226, 904
HpaII	CCGG	2 cut(s)	185, 410
Hpy166II	GTNNAC	3 cut(s)	73, 226, 904
Hpy188I	TCNGA	7 cut(s)	163, 211, 340, 357, 496, 736, 741
Hpy8I	GTNNAC	3 cut(s)	73, 226, 904
HpyAV	CCTTC	3 cut(s)	56, 306, 449
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4V	TGCA	6 cut(s)	35, 173, 203, 554, 755, 1044
HpyF10VI	GCNNNNNNNGC	2 cut(s)	436, 668
HpyF3I	CTNAG	4 cut(s)	26, 702, 770, 907
Hsp92II	CATG	6 cut(s)	370, 520, 654, 786, 899, 1044
HspAI	GCGC	1 cut(s)	430
KspAI	GTTAAC	2 cut(s)	226, 904
Kzo9I	GATC	7 cut(s)	267, 340, 491, 736, 779, 892, 979
LmnI	GCTCC	2 cut(s)	703, 706
Lsp1109I	GCAGC	3 cut(s)	187, 423, 721
LweI	GCATC	3 cut(s)	742, 817, 1053
MaeI	CTAG	3 cut(s)	83, 126, 987
MaeIII	GTNAC	2 cut(s)	599, 943
MalI	GATC	7 cut(s)	269, 342, 493, 738, 781, 894, 981
MboI	GATC	7 cut(s)	267, 340, 491, 736, 779, 892, 979
MboII	GAAGA	4 cut(s)	538, 598, 636, 754
MflI	RGATCY	2 cut(s)	340, 491
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	7 cut(s)	93, 107, 121, 632, 691, 937, 1073
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	2 cut(s)	189, 975
Mph1103I	ATGCAT	2 cut(s)	175, 1046
MseI	TTAA	5 cut(s)	225, 419, 764, 903, 1087
MslI	CAYNNNNRTG	1 cut(s)	842
MspA1I	CMGCKG	1 cut(s)	950
MspI	CCGG	2 cut(s)	185, 410
MspR9I	CCNGG	3 cut(s)	59, 186, 410
Mva1269I	GAATGC	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	59
MvnI	CGCG	2 cut(s)	265, 432
MwoI	GCNNNNNNNGC	2 cut(s)	436, 668
NciI	CCSGG	2 cut(s)	186, 410
NcoI	CCATGG	1 cut(s)	366
NdeI	CATATG	1 cut(s)	839
NdeII	GATC	7 cut(s)	267, 340, 491, 736, 779, 892, 979
NlaIII	CATG	6 cut(s)	370, 520, 654, 786, 899, 1044
NlaIV	GGNNCC	4 cut(s)	294, 342, 963, 1030
NsiI	ATGCAT	2 cut(s)	175, 1046
NspI	RCATGY	2 cut(s)	654, 1044
PaeI	GCATGC	1 cut(s)	1044
PaeR7I	CTCGAG	1 cut(s)	625
PcsI	WCGNNNNNNNCGW	1 cut(s)	296
PctI	GAATGC	1 cut(s)	175
PfeI	GAWTC	3 cut(s)	212, 326, 728
PflMI	CCANNNNNTGG	1 cut(s)	614
PkrI	GCNGC	4 cut(s)	183, 202, 438, 711
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
PsiI	TTATAA	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	57
PspFI	CCCAGC	2 cut(s)	662, 885
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	4 cut(s)	294, 342, 963, 1030
PspPI	GGNCC	2 cut(s)	293, 536
PsrI	GAACNNNNNNTAC	2 cut(s)	936, 968
PstI	CTGCAG	1 cut(s)	37
PsuI	RGATCY	2 cut(s)	340, 491
PvuII	CAGCTG	1 cut(s)	950
RsaI	GTAC	2 cut(s)	39, 466
RsaNI	GTAC	2 cut(s)	38, 465
RseI	CAYNNNNRTG	1 cut(s)	842
SaqAI	TTAA	5 cut(s)	225, 419, 764, 903, 1087
SatI	GCNGC	4 cut(s)	182, 201, 437, 710
Sau3AI	GATC	7 cut(s)	267, 340, 491, 736, 779, 892, 979
Sau96I	GGNCC	2 cut(s)	293, 536
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	3 cut(s)	59, 186, 410
SduI	GDGCHC	1 cut(s)	191
SfaNI	GCATC	3 cut(s)	742, 817, 1053
SfcI	CTRYAG	2 cut(s)	33, 723
Sfr274I	CTCGAG	1 cut(s)	625
SlaI	CTCGAG	1 cut(s)	625
SmiMI	CAYNNNNRTG	1 cut(s)	842
SmlI	CTYRAG	1 cut(s)	625
SmoI	CTYRAG	1 cut(s)	625
SphI	GCATGC	1 cut(s)	1044
Sse9I	AATT	7 cut(s)	93, 107, 121, 632, 691, 937, 1073
SsiI	CCGC	5 cut(s)	182, 265, 378, 432, 819
SspMI	CTAG	3 cut(s)	83, 126, 987
StyD4I	CCNGG	3 cut(s)	57, 184, 408
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	193
TaqI	TCGA	5 cut(s)	20, 47, 140, 383, 626
TasI	AATT	7 cut(s)	93, 107, 121, 632, 691, 937, 1073
TatI	WGTACW	2 cut(s)	37, 464
TauI	GCSGC	1 cut(s)	184
TfiI	GAWTC	3 cut(s)	212, 326, 728
Tru1I	TTAA	5 cut(s)	225, 419, 764, 903, 1087
Tru9I	TTAA	5 cut(s)	225, 419, 764, 903, 1087
TscAI	CASTG	2 cut(s)	196, 820
TseI	GCWGC	3 cut(s)	200, 436, 709
TspDTI	ATGAA	6 cut(s)	432, 591, 626, 720, 826, 864
TspRI	CASTG	2 cut(s)	196, 820
Van91I	CCANNNNNTGG	1 cut(s)	614
XapI	RAATTY	2 cut(s)	121, 632
XceI	RCATGY	2 cut(s)	654, 1044
XhoI	CTCGAG	1 cut(s)	625
XspI	CTAG	3 cut(s)	83, 126, 987
Zsp2I	ATGCAT	2 cut(s)	175, 1046

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.