AT4G16790

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0010777
Physical Location & Seq
Reverse (-)
9451476 .. 9453300
1825 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G16790.1

Sequence Viewer

Length: 1422 bp
ATGGTGGAAGCAAGAAGCTTGAAGAAACCAATCCAATTGGGTAATAAAGAAGATCAAAACCCTAGAAAATTCTACTCTCGATTCATCTTTAAAGCTCTTATCCTCACCGTGCTCTGCGCCGTCGTACCTGTCTTCCTTTCTCAGACACCAGAGCTTGCTAACCAAACAAGACTCCTCGAGCTTCTCCACCTTGTTTTCGTCGGTATCGCAGTCTCTTACGGTCTCTTCAGCCGCAGGAACTACGACGGAGGAGGAGGTGGAGGAACAAGCAATAGTGATCACAACAAAGCTGATCATAGTAATAATAATTCGCATTCATATGTGCCTAAGATTCTTGAAGTATCCTCTGTTTTTAACGTGGGTCACGAGAGTGAATCTGAACCGTCCGATGATTCCTCCGGTGATCAACGTAAGTTTCAGACATGGAAGAACAAGTACCACATGAAAATCCCCGAGGTTGAGACTCGTTTCGTTGATCGAGTTAGTTCAGAAAACAGAGAGAAGCCTCTGCTTTTGCCGGTTCGGAGCTTGAATTATTCTCGTGTTTCTGATTCTTCCGGCGATAATTCCGGTCGATGGGAGAAAGTGAGATCTAAGAGAGAACTTCTGAAGACTCTTGGTGATGATAATAGTGATGTGCTTCCTTCTCCGATTCCATGGAGGTCAAGATCATCTTCATCATCATCATCATCATCAAAGGAGGTTGAATCTCTACCGTCCGTTAAGAATCTGACTACAGTTGAATCACAGCCGTTGATCAAGAATCTGACACCACCTTCTTCTTTCTCTTCTCCAAGAAAGTCGAATCCTATACCTAATCTCGCATCTGAGTTCCATCCATCTCCGCCACCGCCTCCTCCGCCGCCGCCACCACTACCGGCGTTTTATAACTCCTCGTCGAGAAAAGATCATCCCGGAATTTACAGGGTTGAGAGGAGAGAATCATCAGTTCACAAGACGAAATTTGCAGGAGGTGAGTTTCATCCTCCGCCGCCTCCTCCTCCACCACCTCCGGTGGAGTATTATAAGTCACCTCCGACAAAATTCAGACTAAGCAACGAACGGAGAAAGTCCTCGGAGCAAAAGATGAAAAGAAACGCTCCTAAAAAGGTTTGGTGGTCCGATCCAATCGTGGAATCGAAGGAACAAGACACAGAGAAGAATGATCAAAGAAGTAACTTGGGAAGCAAGGCAGTGGAAGAATCCGAGAATGGAGAACAGAGAAGAGGAGAAAATGAAATCCACGACGAGGTTGAGAAGAAGATAGTAGAGGAAGAAGGAGTTAGTGAGATCAACAATGGAAGTGACGTGGACAAGAAGGCAGATGAGTTCATTGCAAAGTTCAGAGAACAGATTAGGTTACAAAGAATCGAGTCTATCAAGAGATCTACTAATAAGATCTCTGCAAATTCTTCGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

473

Amino Acids

53.3

Weight (kDa)

9.31

Isoelectric Point (pI)

69.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 436 - 466 2e-14 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 888, 1026
AciI CCGC 8 cut(s) 232, 845, 851, 860, 863, 866, 989, 992
AclWI GGATC 1 cut(s) 1118
AcsI RAATTY 5 cut(s) 68, 918, 962, 1043, 1408
AcuI CTGAAG 2 cut(s) 211, 629
AfaI GTAC 2 cut(s) 126, 437
AfiI CCNNNNNNNGG 2 cut(s) 576, 1249
AgsI TTSAA 5 cut(s) 22, 338, 532, 707, 743
AjiI CACGTC 1 cut(s) 1309
AleI CACNNNNGTG 1 cut(s) 369
AluBI AGCT 6 cut(s) 18, 95, 154, 181, 290, 528
AluI AGCT 6 cut(s) 18, 95, 154, 181, 290, 528
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 3 cut(s) 217, 227, 455
AlwI GGATC 1 cut(s) 1118
Ama87I CYCGRG 2 cut(s) 176, 452
ApoI RAATTY 5 cut(s) 68, 918, 962, 1043, 1408
AspLEI GCGC 1 cut(s) 119
AspS9I GGNCC 1 cut(s) 1119
AsuC2I CCSGG 1 cut(s) 915
AsuHPI GGTGA 5 cut(s) 97, 413, 632, 986, 1023
AvaI CYCGRG 2 cut(s) 176, 452
AvaII GGWCC 1 cut(s) 1119
BarI GAAGNNNNNNTAC 2 cut(s) 419, 451
BauI CACGAG 2 cut(s) 365, 540
BbsI GAAGAC 2 cut(s) 124, 617
Bbv12I GWGCWC 1 cut(s) 114
BccI CCATC 3 cut(s) 570, 843, 847
BceAI ACGGC 2 cut(s) 104, 736
BcgI CGANNNNNNTGC 1 cut(s) 1395
BciVI GTATCC 1 cut(s) 352
BclI TGATCA 5 cut(s) 277, 292, 403, 756, 1165
BcnI CCSGG 1 cut(s) 915
BcoDI GTCTC 3 cut(s) 217, 227, 455
BfaI CTAG 1 cut(s) 63
BfmI CTRYAG 1 cut(s) 735
BfuI GTATCC 1 cut(s) 352
BglII AGATCT 3 cut(s) 590, 1385, 1398
BisI GCNGC 4 cut(s) 232, 863, 866, 992
BlsI GCNGC 4 cut(s) 233, 864, 867, 993
Bme1390I CCNGG 1 cut(s) 915
Bme18I GGWCC 1 cut(s) 1119
BmeT110I CYCGRG 2 cut(s) 176, 452
BmgBI CACGTC 1 cut(s) 1309
BmgT120I GGNCC 1 cut(s) 1119
BmrFI CCNGG 1 cut(s) 915
BmsI GCATC 1 cut(s) 833
BpiI GAAGAC 2 cut(s) 124, 617
BpuMI CCSGG 1 cut(s) 915
BsaI GGTCTC 1 cut(s) 227
BsaJI CCNNGG 3 cut(s) 453, 656, 1074
BsaWI WCCGGW 3 cut(s) 398, 569, 1012
Bsc4I CCNNNNNNNGG 2 cut(s) 576, 1249
Bse118I RCCGGY 2 cut(s) 517, 877
Bse3DI GCAATG 1 cut(s) 1332
BseDI CCNNGG 3 cut(s) 453, 656, 1074
BseGI GGATG 3 cut(s) 835, 910, 982
BseLI CCNNNNNNNGG 2 cut(s) 576, 1249
BseMI GCAATG 1 cut(s) 1332
BseMII CTCAG 2 cut(s) 155, 819
BseRI GAGGAG 9 cut(s) 164, 264, 267, 846, 883, 949, 987, 990, 1242
Bsh1285I CGRYCG 1 cut(s) 574
BsiEI CGRYCG 1 cut(s) 574
BsiHKAI GWGCWC 1 cut(s) 114
BsiHKCI CYCGRG 2 cut(s) 176, 452
BsiSI CCGG 7 cut(s) 399, 518, 558, 570, 878, 915, 1013
BslI CCNNNNNNNGG 2 cut(s) 576, 1249
BsmAI GTCTC 3 cut(s) 217, 227, 455
BsmI GAATGC 1 cut(s) 313
Bso31I GGTCTC 1 cut(s) 227
BsoBI CYCGRG 2 cut(s) 176, 452
Bsp1286I GDGCHC 1 cut(s) 114
Bsp19I CCATGG 1 cut(s) 656
BspACI CCGC 8 cut(s) 232, 845, 851, 860, 863, 866, 989, 992
BspCNI CTCAG 2 cut(s) 154, 820
BspPI GGATC 1 cut(s) 1118
BspTNI GGTCTC 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 1332
BsrFI RCCGGY 2 cut(s) 517, 877
BssAI RCCGGY 2 cut(s) 517, 877
BssECI CCNNGG 3 cut(s) 453, 656, 1074
BssSI CACGAG 2 cut(s) 365, 540
BssT1I CCWWGG 1 cut(s) 656
Bst2BI CACGAG 2 cut(s) 365, 540
Bst4CI ACNGT 5 cut(s) 109, 221, 384, 717, 739
Bst6I CTCTTC 3 cut(s) 230, 793, 1219
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 5 cut(s) 141, 327, 594, 828, 1052
BstDSI CCRYGG 1 cut(s) 656
BstF5I GGATG 3 cut(s) 835, 910, 982
BstHHI GCGC 1 cut(s) 119
BstMAI GTCTC 3 cut(s) 217, 227, 455
BstMCI CGRYCG 1 cut(s) 574
BstMWI GCNNNNNNNGC 1 cut(s) 859
BstSCI CCNGG 1 cut(s) 913
BstSFI CTRYAG 1 cut(s) 735
BstV2I GAAGAC 2 cut(s) 124, 617
BstX2I RGATCY 3 cut(s) 590, 1385, 1398
BstYI RGATCY 3 cut(s) 590, 1385, 1398
BsuI GTATCC 1 cut(s) 352
BtgI CCRYGG 1 cut(s) 656
BtrI CACGTC 1 cut(s) 1309
BtsCI GGATG 3 cut(s) 835, 910, 982
BtsI GCAGTG 1 cut(s) 1200
BtsIMutI CAGTG 1 cut(s) 1200
Cac8I GCNNGC 1 cut(s) 156
CfoI GCGC 1 cut(s) 119
Cfr10I RCCGGY 2 cut(s) 517, 877
Cfr13I GGNCC 1 cut(s) 1119
Csp6I GTAC 2 cut(s) 125, 436
CviAII CATG 3 cut(s) 423, 442, 657
CviJI RGCY 9 cut(s) 18, 95, 154, 181, 231, 290, 505, 528, 751
CviKI_1 RGCY 9 cut(s) 18, 95, 154, 181, 231, 290, 505, 528, 751
CviQI GTAC 2 cut(s) 125, 436
DdeI CTNAG 5 cut(s) 141, 327, 594, 828, 1052
DraI TTTAAA 1 cut(s) 91
Eam1104I CTCTTC 3 cut(s) 230, 793, 1219
EarI CTCTTC 3 cut(s) 230, 793, 1219
EciI GGCGGA 3 cut(s) 834, 849, 978
Eco130I CCWWGG 1 cut(s) 656
Eco31I GGTCTC 1 cut(s) 227
Eco47I GGWCC 1 cut(s) 1119
Eco57I CTGAAG 2 cut(s) 211, 629
Eco88I CYCGRG 2 cut(s) 176, 452
EcoT14I CCWWGG 1 cut(s) 656
ErhI CCWWGG 1 cut(s) 656
FaeI CATG 3 cut(s) 426, 445, 660
FaiI YATR 9 cut(s) 297, 319, 321, 424, 443, 658, 812, 888, 1026
FalI AAGNNNNNCTT 2 cut(s) 658, 690
FatI CATG 3 cut(s) 422, 441, 656
FauNDI CATATG 1 cut(s) 319
FbaI TGATCA 5 cut(s) 277, 292, 403, 756, 1165
Fnu4HI GCNGC 4 cut(s) 232, 863, 866, 992
FokI GGATG 3 cut(s) 822, 897, 969
Fsp4HI GCNGC 4 cut(s) 232, 863, 866, 992
FspBI CTAG 1 cut(s) 63
GlaI GCGC 1 cut(s) 118
GluI GCNGC 4 cut(s) 232, 863, 866, 992
HapII CCGG 7 cut(s) 399, 518, 558, 570, 878, 915, 1013
HhaI GCGC 1 cut(s) 119
Hin1II CATG 3 cut(s) 426, 445, 660
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HindIII AAGCTT 1 cut(s) 16
HpaII CCGG 7 cut(s) 399, 518, 558, 570, 878, 915, 1013
HphI GGTGA 5 cut(s) 97, 413, 632, 986, 1023
Hpy166II GTNNAC 2 cut(s) 952, 1312
Hpy188III TCNNGA 7 cut(s) 78, 335, 365, 666, 760, 900, 1381
Hpy8I GTNNAC 2 cut(s) 952, 1312
Hpy99I CGWCG 5 cut(s) 125, 203, 248, 901, 1250
HpyAV CCTTC 5 cut(s) 654, 786, 1135, 1271, 1312
HpyCH4III ACNGT 5 cut(s) 109, 221, 384, 717, 739
HpyCH4IV ACGT 3 cut(s) 357, 409, 1308
HpyCH4V TGCA 3 cut(s) 968, 1337, 1406
HpyF10VI GCNNNNNNNGC 1 cut(s) 859
HpyF3I CTNAG 5 cut(s) 141, 327, 594, 828, 1052
HpySE526I ACGT 3 cut(s) 357, 409, 1308
Hsp92II CATG 3 cut(s) 426, 445, 660
HspAI GCGC 1 cut(s) 117
Ksp22I TGATCA 5 cut(s) 277, 292, 403, 756, 1165
LmnI GCTCC 3 cut(s) 525, 1078, 1105
LweI GCATC 1 cut(s) 833
MaeI CTAG 1 cut(s) 63
MaeII ACGT 3 cut(s) 357, 409, 1308
MaeIII GTNAC 5 cut(s) 362, 1029, 1175, 1304, 1359
MfeI CAATTG 1 cut(s) 35
MflI RGATCY 3 cut(s) 590, 1385, 1398
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 9 cut(s) 35, 68, 307, 532, 565, 918, 962, 1043, 1408
MlyI GAGTC 4 cut(s) 165, 457, 607, 1382
MmeI TCCRAC 1 cut(s) 1061
MseI TTAA 3 cut(s) 90, 354, 723
MslI CAYNNNNRTG 2 cut(s) 318, 369
MspI CCGG 7 cut(s) 399, 518, 558, 570, 878, 915, 1013
MspR9I CCNGG 1 cut(s) 915
MunI CAATTG 1 cut(s) 35
Mva1269I GAATGC 1 cut(s) 313
MwoI GCNNNNNNNGC 1 cut(s) 859
NciI CCSGG 1 cut(s) 915
NcoI CCATGG 1 cut(s) 656
NdeI CATATG 1 cut(s) 319
NlaIII CATG 3 cut(s) 426, 445, 660
NmuCI GTSAC 3 cut(s) 362, 1029, 1304
OliI CACNNNNGTG 1 cut(s) 369
PaeR7I CTCGAG 1 cut(s) 176
PcsI WCGNNNNNNNCGW 1 cut(s) 363
PctI GAATGC 1 cut(s) 313
PfoI TCCNGGA 1 cut(s) 913
PkrI GCNGC 4 cut(s) 233, 864, 867, 993
PleI GAGTC 4 cut(s) 165, 457, 607, 1381
PpsI GAGTC 4 cut(s) 165, 457, 607, 1381
PsiI TTATAA 2 cut(s) 888, 1026
PspPI GGNCC 1 cut(s) 1119
PspXI VCTCGAGB 1 cut(s) 176
PsuI RGATCY 3 cut(s) 590, 1385, 1398
RsaI GTAC 2 cut(s) 126, 437
RsaNI GTAC 2 cut(s) 125, 436
RseI CAYNNNNRTG 2 cut(s) 318, 369
SaqAI TTAA 3 cut(s) 90, 354, 723
SatI GCNGC 4 cut(s) 232, 863, 866, 992
Sau96I GGNCC 1 cut(s) 1119
SchI GAGTC 4 cut(s) 165, 457, 607, 1382
ScrFI CCNGG 1 cut(s) 915
SduI GDGCHC 1 cut(s) 114
SfaNI GCATC 1 cut(s) 833
SfcI CTRYAG 1 cut(s) 735
Sfr274I CTCGAG 1 cut(s) 176
SinI GGWCC 1 cut(s) 1119
SlaI CTCGAG 1 cut(s) 176
SmiMI CAYNNNNRTG 2 cut(s) 318, 369
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 9 cut(s) 35, 68, 307, 532, 565, 918, 962, 1043, 1408
SsiI CCGC 8 cut(s) 232, 845, 851, 860, 863, 866, 989, 992
SspMI CTAG 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 913
StyI CCWWGG 1 cut(s) 656
TaaI ACNGT 5 cut(s) 109, 221, 384, 717, 739
TaiI ACGT 3 cut(s) 360, 412, 1311
TaqI TCGA 9 cut(s) 79, 177, 478, 574, 803, 899, 1139, 1371, 1415
TasI AATT 9 cut(s) 35, 68, 307, 532, 565, 918, 962, 1043, 1408
TauI GCSGC 4 cut(s) 234, 865, 868, 994
Tru1I TTAA 3 cut(s) 90, 354, 723
Tru9I TTAA 3 cut(s) 90, 354, 723
TscAI CASTG 1 cut(s) 1200
TseFI GTSAC 3 cut(s) 362, 1029, 1304
Tsp45I GTSAC 3 cut(s) 362, 1029, 1304
TspDTI ATGAA 8 cut(s) 73, 306, 458, 666, 971, 1103, 1251, 1321
TspGWI ACGGA 3 cut(s) 261, 709, 1078
TspRI CASTG 1 cut(s) 1200
VpaK11BI GGWCC 1 cut(s) 1119
XapI RAATTY 5 cut(s) 68, 918, 962, 1043, 1408
XhoI CTCGAG 1 cut(s) 176
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.