MD04G1061300.v1.1

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0010777
Physical Location & Seq
Reverse (-)
8083261 .. 8085009
1749 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1061300.v1.1.491

Sequence Viewer

Length: 1749 bp
ATGTGTTCTTCAATGGCAGAGAGTGAACCAGAGTCTAATTACACCAAACACCAAAAGTTGGTCCAAGAACAACAAAACCATGAAAGGCCGTTTTACAATCATTTTCTTTACAAAATTGCTCTAGTTGTAGTTTTCTTTGTTATTCTCCCACTTTTTCCATCACAAGCTCCTGAGTTCTTCAACCAAAGTGTAGTCACCAGAAGCTGGGAGCTTCTGCACCTTCTCCTTGTTGGCATAGCAGTCTCTTATGGCCTTTTTAGCAAACGAAATGAGAAAACAGACGAGGACAACAGCAACAACAATCACACAAAATTTGATAATGCTCATTCATATGTCTCTAGATTTCTTCAGGTGTCCTCAGTTTTTGATGATGAGACTGAACCCGCACCTGGTTCTGATGGGAACAAGGTCCAAACATGGAGCAGTCAGTATTATCGTAACGAGCCGGCGGTGATTGTGGCTCAGGAGCACTCTGCTGTTGATGAACAGAGAGGTACCGCTTCACCAATCGTTGAAAAACCATTGCTTTTGCCGGTTAGGAGCTTGAAACAACGTGTTCCCGAAAACCCGGATAGCATAGAGTCTGTTAAAGAGTCTAGTGGGGATTCTGGCTCATTAAGCAGGTCTAATTCAAGGTCAGGTTCAAGAAGGTTTTCAAGCAAATCGAATAAGGCTAGAGGTGGTGAATTTGGAGGGTTGGATTATCTAGAATTGGAGGAGAAATTGAAGGAAAGTGTTGTGCTTCCTTCTCCAATTCCATGGAGATCAAGATCAGGAAGGTTGGATGTGAAGGAAGAAGTTGACAATAGTACTCCTATGGAGGAATCTGAGTTTAGCCGCCAAGAGGCGTGGGGTTCGAGGTCTCAAGGTTCTCGTTCTTCTCGATCGAATTCCATTTCTTCGTCCCCAAAACTCTCTCCTTCGCCATCAATTTCATCTCCAAAGAAGTCTTCTCCTTTAACGTCATTGTCATCATCGGAATCTCAAACGAAGAATGCAGAGGATTTGGGGAGGAAGAAGAGCCTGTACAAGTCTTCTCCTCCCCCACCTCCACCGCCCCCACCAATGTTTTACAAGTCATCATCAATGAGGCCGATTAGAGATGGGGTTTCGTATGAGAAGGATATGAGGAGAAGTTTCAGTAGTGAAACAAACAACGTGAACAGGAGCAACGGAGAATTTGTGATGGGCAGAGTGAATTCAGGGACCGAAACCAAGCGAAGAAGCTACGTTGATGGTTCATCAATGGGGGGGCCAGTCAGAACAACCAGAGCTGGTGAGAGCGTGGCAGGGCCTTGGAAGGTAATGGAGAAAAGCTCTAAGGAAGTTGAAACAAGCTTGGTGGAGAAAGCGGCACGAAAGAGAGTAGGGTATGATGAAACTTCTTTCAGGGCTGAGAAAATGGGACATGAAAGCATCCACAGAAAGCCAAACTCAGCTTCTTTCGATGAATTTTCGGAGGAAGAGAAAGAAGATTTTCACGACAAGGTAGTGATGGAATCGGATGAAGAAACCGAAAGTGAAGATGAGAGCTTCGAAGAAAGTTTGATCCGAAAAGACATTGGGGAGACACCAAAGCCAACTCCAAACAGTTATGTGTCTGTTTCAGGCAGTGTGAGTGATGAAGGGCCTGATGTGGATAAGAAGGCTGATGAATTCATAGCGAAATTCAGGGAGCAGATTAGGCTTCAGAGAATAGATTCGATCAAGCGATCGAGTGCTCAAATTAGTAGAAACTTGTCAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

583

Amino Acids

65.21

Weight (kDa)

6.07

Isoelectric Point (pI)

68.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 544 - 578 3.7e-14 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 612
Acc65I GGTACC 1 cut(s) 494
AccB1I GGYRCC 1 cut(s) 494
AccB7I CCANNNNNTGG 2 cut(s) 58, 204
AciI CCGC 6 cut(s) 384, 449, 498, 838, 1055, 1352
AclWI GGATC 1 cut(s) 1543
AcsI RAATTY 8 cut(s) 311, 686, 889, 1178, 1198, 1451, 1655, 1667
AcuI CTGAAG 2 cut(s) 332, 1673
AfaI GTAC 3 cut(s) 496, 811, 1028
AfiI CCNNNNNNNGG 4 cut(s) 58, 204, 389, 844
AflIII ACRYGT 1 cut(s) 553
AgsI TTSAA 9 cut(s) 12, 181, 515, 547, 633, 645, 657, 727, 1331
AjnI CCWGG 1 cut(s) 388
AjuI GAANNNNNNNTTGG 4 cut(s) 934, 966, 1423, 1455
Alw21I GWGCWC 2 cut(s) 471, 1723
Alw26I GTCTC 5 cut(s) 247, 340, 368, 867, 1562
AlwI GGATC 1 cut(s) 1543
AlwNI CAGNNNCTG 1 cut(s) 204
AoxI GGCC 6 cut(s) 86, 250, 1091, 1253, 1292, 1628
ApoI RAATTY 8 cut(s) 311, 686, 889, 1178, 1198, 1451, 1655, 1667
Asp700I GAANNNNTTC 3 cut(s) 652, 1476, 1699
Asp718I GGTACC 1 cut(s) 494
AspS9I GGNCC 6 cut(s) 61, 409, 1206, 1253, 1292, 1628
AsuC2I CCSGG 1 cut(s) 569
AsuHPI GGTGA 5 cut(s) 187, 463, 495, 695, 1289
AsuII TTCGAA 1 cut(s) 1536
AvaII GGWCC 3 cut(s) 61, 409, 1206
BanI GGYRCC 1 cut(s) 494
BarI GAAGNNNNNNTAC 2 cut(s) 1010, 1042
BbsI GAAGAC 2 cut(s) 942, 1026
Bbv12I GWGCWC 2 cut(s) 471, 1723
BccI CCATC 7 cut(s) 166, 392, 934, 1097, 1180, 1229, 1489
BceAI ACGGC 1 cut(s) 73
BciT130I CCWGG 1 cut(s) 390
BcnI CCSGG 1 cut(s) 569
BcoDI GTCTC 5 cut(s) 247, 340, 368, 867, 1562
BfaI CTAG 5 cut(s) 122, 339, 597, 675, 707
BfuAI ACCTGC 1 cut(s) 612
BisI GCNGC 2 cut(s) 838, 1353
BlsI GCNGC 2 cut(s) 839, 1354
BmcAI AGTACT 1 cut(s) 811
Bme1390I CCNGG 2 cut(s) 390, 569
Bme18I GGWCC 3 cut(s) 61, 409, 1206
BmgT120I GGNCC 6 cut(s) 61, 409, 1206, 1253, 1292, 1628
BmiI GGNNCC 3 cut(s) 496, 1207, 1254
BmrFI CCNGG 2 cut(s) 390, 569
BmsI GCATC 1 cut(s) 1425
BpiI GAAGAC 2 cut(s) 942, 1026
BplI GAGNNNNNCTC 2 cut(s) 1301, 1333
Bpu10I CCTNAGC 1 cut(s) 462
Bpu14I TTCGAA 1 cut(s) 1536
BpuEI CTTGAG 1 cut(s) 849
BpuMI CCSGG 1 cut(s) 569
BsaBI GATNNNNATC 1 cut(s) 769
BsaI GGTCTC 1 cut(s) 867
BsaJI CCNNGG 2 cut(s) 758, 1295
BsaXI ACNNNNNCTCC 2 cut(s) 1167, 1197
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 204, 389, 844
Bse118I RCCGGY 2 cut(s) 445, 532
Bse1I ACTGG 1 cut(s) 1256
Bse3DI GCAATG 1 cut(s) 521
Bse8I GATNNNNATC 1 cut(s) 769
BseBI CCWGG 1 cut(s) 390
BseDI CCNNGG 2 cut(s) 758, 1295
BseGI GGATG 3 cut(s) 790, 1416, 1510
BseJI GATNNNNATC 1 cut(s) 769
BseLI CCNNNNNNNGG 4 cut(s) 58, 204, 389, 844
BseMI GCAATG 1 cut(s) 521
BseMII CTCAG 6 cut(s) 162, 372, 476, 819, 1386, 1449
BseNI ACTGG 1 cut(s) 1256
BseRI GAGGAG 3 cut(s) 731, 1029, 1144
BseYI CCCAGC 1 cut(s) 204
BsgI GTGCAG 1 cut(s) 200
Bsh1285I CGRYCG 2 cut(s) 887, 1715
BshFI GGCC 6 cut(s) 88, 252, 1093, 1255, 1294, 1630
BshNI GGYRCC 1 cut(s) 494
BsiEI CGRYCG 2 cut(s) 887, 1715
BsiHKAI GWGCWC 2 cut(s) 471, 1723
BsiSI CCGG 3 cut(s) 446, 533, 569
BslFI GGGAC 3 cut(s) 889, 1219, 1419
BslI CCNNNNNNNGG 4 cut(s) 58, 204, 389, 844
BsmAI GTCTC 5 cut(s) 247, 340, 368, 867, 1562
BsmFI GGGAC 3 cut(s) 889, 1219, 1419
BsmI GAATGC 1 cut(s) 1000
BsnI GGCC 6 cut(s) 88, 252, 1093, 1255, 1294, 1630
Bso31I GGTCTC 1 cut(s) 867
Bsp119I TTCGAA 1 cut(s) 1536
Bsp1286I GDGCHC 2 cut(s) 471, 1723
Bsp1407I TGTACA 1 cut(s) 1026
Bsp143I GATC 6 cut(s) 764, 770, 884, 1548, 1704, 1712
Bsp19I CCATGG 1 cut(s) 758
BspACI CCGC 6 cut(s) 384, 449, 498, 838, 1055, 1352
BspANI GGCC 6 cut(s) 88, 252, 1093, 1255, 1294, 1630
BspCNI CTCAG 6 cut(s) 163, 371, 475, 820, 1387, 1448
BspLI GGNNCC 3 cut(s) 496, 1207, 1254
BspMI ACCTGC 1 cut(s) 612
BspPI GGATC 1 cut(s) 1543
BspQI GCTCTTC 1 cut(s) 1013
BspT104I TTCGAA 1 cut(s) 1536
BspT107I GGYRCC 1 cut(s) 494
BspTNI GGTCTC 1 cut(s) 867
BsrDI GCAATG 1 cut(s) 521
BsrFI RCCGGY 2 cut(s) 445, 532
BsrGI TGTACA 1 cut(s) 1026
BsrI ACTGG 1 cut(s) 1256
BssAI RCCGGY 2 cut(s) 445, 532
BssECI CCNNGG 2 cut(s) 758, 1295
BssMI GATC 6 cut(s) 764, 770, 884, 1548, 1704, 1712
BssT1I CCWWGG 2 cut(s) 758, 1295
Bst2UI CCWGG 1 cut(s) 390
Bst4CI ACNGT 1 cut(s) 1592
Bst6I CTCTTC 2 cut(s) 1013, 1458
BstAUI TGTACA 1 cut(s) 1026
BstBI TTCGAA 1 cut(s) 1536
BstC8I GCNNGC 1 cut(s) 447
BstDEI CTNAG 7 cut(s) 171, 358, 462, 828, 1320, 1395, 1435
BstDSI CCRYGG 1 cut(s) 758
BstF5I GGATG 3 cut(s) 790, 1416, 1510
BstKTI GATC 6 cut(s) 767, 773, 887, 1551, 1707, 1715
BstMAI GTCTC 5 cut(s) 247, 340, 368, 867, 1562
BstMBI GATC 6 cut(s) 764, 770, 884, 1548, 1704, 1712
BstMCI CGRYCG 2 cut(s) 887, 1715
BstMWI GCNNNNNNNGC 3 cut(s) 258, 618, 1684
BstNI CCWGG 1 cut(s) 390
BstSCI CCNGG 2 cut(s) 388, 567
BstV2I GAAGAC 2 cut(s) 942, 1026
BstXI CCANNNNNNTGG 1 cut(s) 759
BsuRI GGCC 6 cut(s) 88, 252, 1093, 1255, 1294, 1630
BtgI CCRYGG 1 cut(s) 758
BtsCI GGATG 3 cut(s) 790, 1416, 1510
BtsI GCAGTG 1 cut(s) 1618
BtsIMutI CAGTG 1 cut(s) 1618
BveI ACCTGC 1 cut(s) 612
Cac8I GCNNGC 1 cut(s) 447
CaiI CAGNNNCTG 1 cut(s) 204
Cfr10I RCCGGY 2 cut(s) 445, 532
Cfr13I GGNCC 6 cut(s) 61, 409, 1206, 1253, 1292, 1628
CsiI ACCWGGT 1 cut(s) 388
Csp6I GTAC 3 cut(s) 495, 810, 1027
CspCI CAANNNNNGTGG 4 cut(s) 830, 865, 1323, 1358
CviAII CATG 4 cut(s) 80, 417, 759, 1409
CviQI GTAC 3 cut(s) 495, 810, 1027
DdeI CTNAG 7 cut(s) 171, 358, 462, 828, 1320, 1395, 1435
DpnI GATC 6 cut(s) 766, 772, 886, 1550, 1706, 1714
DpnII GATC 6 cut(s) 764, 770, 884, 1548, 1704, 1712
Eam1104I CTCTTC 2 cut(s) 1013, 1458
EarI CTCTTC 2 cut(s) 1013, 1458
Eco130I CCWWGG 2 cut(s) 758, 1295
Eco31I GGTCTC 1 cut(s) 867
Eco47I GGWCC 3 cut(s) 61, 409, 1206
Eco57I CTGAAG 2 cut(s) 332, 1673
EcoO109I RGGNCCY 2 cut(s) 1292, 1628
EcoRI GAATTC 3 cut(s) 889, 1198, 1655
EcoRII CCWGG 1 cut(s) 388
EcoT14I CCWWGG 2 cut(s) 758, 1295
ErhI CCWWGG 2 cut(s) 758, 1295
FaeI CATG 4 cut(s) 83, 420, 762, 1412
FaqI GGGAC 3 cut(s) 889, 1219, 1419
FatI CATG 4 cut(s) 79, 416, 758, 1408
FauI CCCGC 1 cut(s) 391
FauNDI CATATG 1 cut(s) 331
Fnu4HI GCNGC 2 cut(s) 838, 1353
FokI GGATG 3 cut(s) 797, 1403, 1517
Fsp4HI GCNGC 2 cut(s) 838, 1353
FspBI CTAG 5 cut(s) 122, 339, 597, 675, 707
GluI GCNGC 2 cut(s) 838, 1353
GsaI CCCAGC 1 cut(s) 208
HaeIII GGCC 6 cut(s) 88, 252, 1093, 1255, 1294, 1630
HapII CCGG 3 cut(s) 446, 533, 569
Hin1II CATG 4 cut(s) 83, 420, 762, 1412
HincII GTYRAC 1 cut(s) 802
HindII GTYRAC 1 cut(s) 802
HindIII AAGCTT 1 cut(s) 1336
HinfI GANTC 8 cut(s) 32, 581, 593, 605, 824, 980, 1499, 1700
HpaII CCGG 3 cut(s) 446, 533, 569
HphI GGTGA 5 cut(s) 187, 463, 495, 695, 1289
Hpy166II GTNNAC 3 cut(s) 26, 802, 1162
Hpy188I TCNGA 8 cut(s) 397, 829, 979, 1262, 1459, 1504, 1553, 1692
Hpy8I GTNNAC 3 cut(s) 26, 802, 1162
HpyCH4III ACNGT 1 cut(s) 1592
HpyCH4IV ACGT 4 cut(s) 553, 962, 1158, 1230
HpyCH4V TGCA 2 cut(s) 217, 998
HpyF10VI GCNNNNNNNGC 3 cut(s) 258, 618, 1684
HpyF3I CTNAG 7 cut(s) 171, 358, 462, 828, 1320, 1395, 1435
HpySE526I ACGT 4 cut(s) 553, 962, 1158, 1230
Hsp92II CATG 4 cut(s) 83, 420, 762, 1412
KpnI GGTACC 1 cut(s) 498
KroI GCCGGC 1 cut(s) 445
KroNI GCCGGC 1 cut(s) 447
Kzo9I GATC 6 cut(s) 764, 770, 884, 1548, 1704, 1712
LguI GCTCTTC 1 cut(s) 1013
LmnI GCTCC 7 cut(s) 172, 208, 420, 466, 540, 1167, 1675
LweI GCATC 1 cut(s) 1425
MabI ACCWGGT 1 cut(s) 388
MaeI CTAG 5 cut(s) 122, 339, 597, 675, 707
MaeII ACGT 4 cut(s) 553, 962, 1158, 1230
MaeIII GTNAC 2 cut(s) 193, 437
MalI GATC 6 cut(s) 766, 772, 886, 1550, 1706, 1714
MboI GATC 6 cut(s) 764, 770, 884, 1548, 1704, 1712
MhlI GDGCHC 2 cut(s) 471, 1723
MlyI GAGTC 3 cut(s) 41, 590, 602
MmeI TCCRAC 2 cut(s) 678, 762
MroNI GCCGGC 1 cut(s) 445
MroXI GAANNNNTTC 3 cut(s) 652, 1476, 1699
MseI TTAA 3 cut(s) 588, 617, 959
MslI CAYNNNNRTG 1 cut(s) 330
MspI CCGG 3 cut(s) 446, 533, 569
MspR9I CCNGG 2 cut(s) 390, 569
Mva1269I GAATGC 1 cut(s) 1000
MvaI CCWGG 1 cut(s) 390
MwoI GCNNNNNNNGC 3 cut(s) 258, 618, 1684
NaeI GCCGGC 1 cut(s) 447
NciI CCSGG 1 cut(s) 569
NcoI CCATGG 1 cut(s) 758
NdeI CATATG 1 cut(s) 331
NdeII GATC 6 cut(s) 764, 770, 884, 1548, 1704, 1712
NgoMIV GCCGGC 1 cut(s) 445
NlaIII CATG 4 cut(s) 83, 420, 762, 1412
NlaIV GGNNCC 3 cut(s) 496, 1207, 1254
NmuCI GTSAC 1 cut(s) 193
NspV TTCGAA 1 cut(s) 1536
PciSI GCTCTTC 1 cut(s) 1013
PcsI WCGNNNNNNNCGW 1 cut(s) 880
PctI GAATGC 1 cut(s) 1000
PdiI GCCGGC 1 cut(s) 447
PdmI GAANNNNTTC 3 cut(s) 652, 1476, 1699
PfeI GAWTC 5 cut(s) 605, 824, 980, 1499, 1700
PflMI CCANNNNNTGG 2 cut(s) 58, 204
PkrI GCNGC 2 cut(s) 839, 1354
Ple19I CGATCG 2 cut(s) 887, 1715
PleI GAGTC 3 cut(s) 40, 589, 601
PpsI GAGTC 3 cut(s) 40, 589, 601
Psp6I CCWGG 1 cut(s) 388
PspFI CCCAGC 1 cut(s) 204
PspGI CCWGG 1 cut(s) 388
PspN4I GGNNCC 3 cut(s) 496, 1207, 1254
PspPI GGNCC 6 cut(s) 61, 409, 1206, 1253, 1292, 1628
PstNI CAGNNNCTG 1 cut(s) 204
PvuI CGATCG 2 cut(s) 887, 1715
RsaI GTAC 3 cut(s) 496, 811, 1028
RsaNI GTAC 3 cut(s) 495, 810, 1027
RseI CAYNNNNRTG 1 cut(s) 330
SapI GCTCTTC 1 cut(s) 1013
SaqAI TTAA 3 cut(s) 588, 617, 959
SatI GCNGC 2 cut(s) 838, 1353
Sau3AI GATC 6 cut(s) 764, 770, 884, 1548, 1704, 1712
Sau96I GGNCC 6 cut(s) 61, 409, 1206, 1253, 1292, 1628
ScaI AGTACT 1 cut(s) 811
SchI GAGTC 3 cut(s) 41, 590, 602
ScrFI CCNGG 2 cut(s) 390, 569
SduI GDGCHC 2 cut(s) 471, 1723
SexAI ACCWGGT 1 cut(s) 388
SfaNI GCATC 1 cut(s) 1425
SfuI TTCGAA 1 cut(s) 1536
SinI GGWCC 3 cut(s) 61, 409, 1206
SmiMI CAYNNNNRTG 1 cut(s) 330
SmlI CTYRAG 1 cut(s) 864
SmoI CTYRAG 1 cut(s) 864
SsiI CCGC 6 cut(s) 384, 449, 498, 838, 1055, 1352
SspMI CTAG 5 cut(s) 122, 339, 597, 675, 707
StyD4I CCNGG 2 cut(s) 388, 567
StyI CCWWGG 2 cut(s) 758, 1295
TaaI ACNGT 1 cut(s) 1592
TaiI ACGT 4 cut(s) 556, 965, 1161, 1233
TaqI TCGA 8 cut(s) 665, 857, 883, 887, 1446, 1536, 1703, 1715
TaqII GACCGA 1 cut(s) 1223
TatI WGTACW 2 cut(s) 809, 1026
TauI GCSGC 2 cut(s) 840, 1355
TfiI GAWTC 5 cut(s) 605, 824, 980, 1499, 1700
Tru1I TTAA 3 cut(s) 588, 617, 959
Tru9I TTAA 3 cut(s) 588, 617, 959
TscAI CASTG 1 cut(s) 1618
TseFI GTSAC 1 cut(s) 193
Tsp45I GTSAC 1 cut(s) 193
TspGWI ACGGA 1 cut(s) 1188
TspRI CASTG 1 cut(s) 1618
Van91I CCANNNNNTGG 2 cut(s) 58, 204
VpaK11BI GGWCC 3 cut(s) 61, 409, 1206
XapI RAATTY 8 cut(s) 311, 686, 889, 1178, 1198, 1451, 1655, 1667
XbaI TCTAGA 2 cut(s) 338, 706
XmnI GAANNNNTTC 3 cut(s) 652, 1476, 1699
XspI CTAG 5 cut(s) 122, 339, 597, 675, 707
ZrmI AGTACT 1 cut(s) 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.