pycom06g04590

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0010777
Physical Location & Seq
Reverse (-)
5977745 .. 5979058
1314 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g04590.1

Sequence Viewer

Length: 1314 bp
ATGAGCCGGTGGTGGTTGTGGCTCAGGAACACTCTGCTCTTAATGAACAAAAAGGTACCGCTTTCACAAATCGGTGAAAAAACACTATTTTTGCTGGTCAGGAGCTTGAAACAACATGTTCCCAAAAATAGGGATACCATAAAGTCTGTTAAAGAATCTAGTGGGGATTCTAGCTCTCTAAATAAGTCAAATTCAAGGTCTGGTTCAAAAAGGTTTTCGAGCAAATCGAACAAGGTTAAATGTGGAGATTTTGGAGGGTTGCATCATCAAGAATTGGAGGAGAAGTTGAACGACAGTGTTGTGCTTCCTTCTCCAATTCCATGGAGATCGAGGTCAAGAAGATTGGATGTGAAGGAGGAAGTTGATAATAATACTCCTCCAATGGAGGAATCTGTGCTTAGCCGCCAAGAGTCATGGGGTTCGAGGTCCCAAGGTTCTCATTCTTCTCAATTAAATTCCATTTCTTCATCCCCAATTGTGTCTCCTTCGCCATCACTTTCATCTGCGAAGAAGTCTTCTCCTTCACCTTCATTGTCATCATCAGAATCTCAAACAAAGAATGCAAAGGATTTGGGGAGGAAGAAGAGCTTGTACAAATCTTCACCTCCCCTACCTCCACTACCTCCAACAATGTTTTACAAGTCATCATCAACGAGACCGATCAAATATGGGGCTTCATATGAGAAAGATTTGAGGAGAAGTTTCAGTAGTGGAACAAACAACATGAATAAGAGCAATGGAGAATTTGTGACCGGCAAAGTGAATTCAGGGATCGAAACCGAGCAAAGAAGCTACGTTGATAGTTTATCAATGAGTAAATCAGTTCGAACAACCAGAGCTGGTAAGAGCGCAGCAAGGGCTTGGAAGGTAATGGAGAAAAGCTCAAAGGAAGTTGAAACAAGTTTGGTGGAGAAAGTGGTACGAAAGAAAGAAGGGTTTGATGAAACTTCTTCTAGGGCTAAGAAAATGCGACCTGAAAGTTTCCACGACATGTCAAGGTCTACTTCTTTCAATGAATTTTCAGAGGAAGAGAAAAAACATTTTCTCAACGAGGTGGGTATGGAATCGGATGAAGAAACTGAAAACGAAGATGATAGCTTTGACGAAAACTTGATCTGGAAAGACATTAGGGAGATCCCAAAGACAACTCCAAACAATTATGTGTCTATTTCAGGCAATGTTTGTGATGCAGGGCCAGATGTGGATAAGAAGGCTGATGAGTTCATAGCGAAATTCAGGGAGAAAATTAGGCTTCAGAGAATAGATTTGATCAAGCGATCGAGTGCTCAGATTAGTAAAAACTTATCAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

438

Amino Acids

49.22

Weight (kDa)

9.66

Isoelectric Point (pI)

69.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 399 - 429 2.8e-11 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 55
AccB1I GGYRCC 1 cut(s) 55
AccI GTMKAC 1 cut(s) 1001
AciI CCGC 2 cut(s) 59, 403
AclWI GGATC 2 cut(s) 779, 1129
AcsI RAATTY 6 cut(s) 190, 454, 743, 763, 1016, 1232
AcuI CTGAAG 1 cut(s) 1238
AfaI GTAC 3 cut(s) 57, 593, 921
AfiI CCNNNNNNNGG 1 cut(s) 129
AflIII ACRYGT 2 cut(s) 115, 990
AgsI TTSAA 6 cut(s) 109, 195, 207, 289, 896, 1012
AluBI AGCT 7 cut(s) 105, 174, 588, 792, 839, 882, 1098
AluI AGCT 7 cut(s) 105, 174, 588, 792, 839, 882, 1098
Alw21I GWGCWC 1 cut(s) 1288
Alw26I GTCTC 2 cut(s) 486, 649
AlwI GGATC 2 cut(s) 779, 1129
AoxI GGCC 1 cut(s) 1193
ApeKI GCWGC 1 cut(s) 851
ApoI RAATTY 6 cut(s) 190, 454, 743, 763, 1016, 1232
ArsI GACNNNNNNTTYG 2 cut(s) 182, 214
Asp718I GGTACC 1 cut(s) 55
AspLEI GCGC 1 cut(s) 851
AspS9I GGNCC 2 cut(s) 426, 1193
AsuHPI GGTGA 3 cut(s) 86, 516, 594
AsuII TTCGAA 1 cut(s) 826
AvaII GGWCC 1 cut(s) 426
BanI GGYRCC 1 cut(s) 55
BarI GAAGNNNNNNTAC 2 cut(s) 575, 607
BbsI GAAGAC 1 cut(s) 507
Bbv12I GWGCWC 1 cut(s) 1288
BbvI GCAGC 1 cut(s) 863
BccI CCATC 1 cut(s) 499
BciVI GTATCC 1 cut(s) 127
BclI TGATCA 1 cut(s) 1269
BcoDI GTCTC 2 cut(s) 486, 649
BfaI CTAG 3 cut(s) 159, 171, 954
BfuI GTATCC 1 cut(s) 127
BisI GCNGC 2 cut(s) 403, 852
BlpI GCTNAGC 1 cut(s) 398
BlsI GCNGC 2 cut(s) 404, 853
Bme18I GGWCC 1 cut(s) 426
BmgT120I GGNCC 2 cut(s) 426, 1193
BmiI GGNNCC 2 cut(s) 57, 428
BmsI GCATC 2 cut(s) 271, 1177
BpiI GAAGAC 1 cut(s) 507
BplI GAGNNNNNCTC 2 cut(s) 866, 898
Bpu10I CCTNAGC 1 cut(s) 23
Bpu1102I GCTNAGC 1 cut(s) 398
Bpu14I TTCGAA 1 cut(s) 826
BsaI GGTCTC 1 cut(s) 649
BsaJI CCNNGG 2 cut(s) 320, 430
BsaXI ACNNNNNCTCC 4 cut(s) 269, 299, 732, 762
Bsc4I CCNNNNNNNGG 1 cut(s) 129
Bse118I RCCGGY 2 cut(s) 6, 752
Bse3DI GCAATG 2 cut(s) 742, 1183
BseDI CCNNGG 2 cut(s) 320, 430
BseGI GGATG 3 cut(s) 352, 467, 1075
BseLI CCNNNNNNNGG 1 cut(s) 129
BseMI GCAATG 2 cut(s) 742, 1183
BseMII CTCAG 2 cut(s) 37, 1301
BseRI GAGGAG 3 cut(s) 293, 366, 709
BseXI GCAGC 1 cut(s) 863
Bsh1285I CGRYCG 1 cut(s) 1280
BshFI GGCC 1 cut(s) 1195
BshNI GGYRCC 1 cut(s) 55
BsiEI CGRYCG 1 cut(s) 1280
BsiHKAI GWGCWC 1 cut(s) 1288
BsiSI CCGG 2 cut(s) 7, 753
BslFI GGGAC 1 cut(s) 412
BslI CCNNNNNNNGG 1 cut(s) 129
BsmAI GTCTC 2 cut(s) 486, 649
BsmFI GGGAC 1 cut(s) 412
BsmI GAATGC 1 cut(s) 565
BsnI GGCC 1 cut(s) 1195
Bso31I GGTCTC 1 cut(s) 649
Bsp119I TTCGAA 1 cut(s) 826
Bsp1286I GDGCHC 1 cut(s) 1288
Bsp1407I TGTACA 1 cut(s) 591
Bsp143I GATC 7 cut(s) 326, 660, 771, 1113, 1134, 1269, 1277
Bsp1720I GCTNAGC 1 cut(s) 398
Bsp19I CCATGG 1 cut(s) 320
BspACI CCGC 2 cut(s) 59, 403
BspANI GGCC 1 cut(s) 1195
BspCNI CTCAG 2 cut(s) 36, 1300
BspLI GGNNCC 2 cut(s) 57, 428
BspPI GGATC 2 cut(s) 779, 1129
BspQI GCTCTTC 1 cut(s) 578
BspT104I TTCGAA 1 cut(s) 826
BspT107I GGYRCC 1 cut(s) 55
BspTNI GGTCTC 1 cut(s) 649
BsrDI GCAATG 2 cut(s) 742, 1183
BsrFI RCCGGY 2 cut(s) 6, 752
BsrGI TGTACA 1 cut(s) 591
BssAI RCCGGY 2 cut(s) 6, 752
BssECI CCNNGG 2 cut(s) 320, 430
BssMI GATC 7 cut(s) 326, 660, 771, 1113, 1134, 1269, 1277
BssT1I CCWWGG 2 cut(s) 320, 430
Bst4CI ACNGT 1 cut(s) 296
Bst6I CTCTTC 2 cut(s) 578, 1023
BstAUI TGTACA 1 cut(s) 591
BstBI TTCGAA 1 cut(s) 826
BstDEI CTNAG 4 cut(s) 23, 398, 960, 1287
BstDSI CCRYGG 1 cut(s) 320
BstF5I GGATG 3 cut(s) 352, 467, 1075
BstHHI GCGC 1 cut(s) 851
BstKTI GATC 7 cut(s) 329, 663, 774, 1116, 1137, 1272, 1280
BstMAI GTCTC 2 cut(s) 486, 649
BstMBI GATC 7 cut(s) 326, 660, 771, 1113, 1134, 1269, 1277
BstMCI CGRYCG 1 cut(s) 1280
BstMWI GCNNNNNNNGC 1 cut(s) 857
BstNSI RCATGY 2 cut(s) 119, 994
BstV1I GCAGC 1 cut(s) 863
BstV2I GAAGAC 1 cut(s) 507
BstX2I RGATCY 1 cut(s) 1134
BstXI CCANNNNNNTGG 1 cut(s) 321
BstYI RGATCY 1 cut(s) 1134
BsuI GTATCC 1 cut(s) 127
BsuRI GGCC 1 cut(s) 1195
BtgI CCRYGG 1 cut(s) 320
BtsCI GGATG 3 cut(s) 352, 467, 1075
BtsIMutI CAGTG 1 cut(s) 301
CfoI GCGC 1 cut(s) 851
Cfr10I RCCGGY 2 cut(s) 6, 752
Cfr13I GGNCC 2 cut(s) 426, 1193
Csp6I GTAC 3 cut(s) 56, 592, 920
CspCI CAANNNNNGTGG 2 cut(s) 888, 923
CviAII CATG 5 cut(s) 116, 321, 414, 724, 991
CviQI GTAC 3 cut(s) 56, 592, 920
DdeI CTNAG 4 cut(s) 23, 398, 960, 1287
DpnI GATC 7 cut(s) 328, 662, 773, 1115, 1136, 1271, 1279
DpnII GATC 7 cut(s) 326, 660, 771, 1113, 1134, 1269, 1277
Eam1104I CTCTTC 2 cut(s) 578, 1023
EarI CTCTTC 2 cut(s) 578, 1023
Eco130I CCWWGG 2 cut(s) 320, 430
Eco31I GGTCTC 1 cut(s) 649
Eco47I GGWCC 1 cut(s) 426
Eco57I CTGAAG 1 cut(s) 1238
EcoO109I RGGNCCY 1 cut(s) 426
EcoRI GAATTC 1 cut(s) 763
EcoT14I CCWWGG 2 cut(s) 320, 430
ErhI CCWWGG 2 cut(s) 320, 430
FaeI CATG 5 cut(s) 119, 324, 417, 727, 994
FalI AAGNNNNNCTT 4 cut(s) 572, 604, 988, 1020
FaqI GGGAC 1 cut(s) 412
FatI CATG 5 cut(s) 115, 320, 413, 723, 990
FauNDI CATATG 1 cut(s) 679
FbaI TGATCA 1 cut(s) 1269
FblI GTMKAC 1 cut(s) 1001
Fnu4HI GCNGC 2 cut(s) 403, 852
FokI GGATG 3 cut(s) 359, 454, 1082
Fsp4HI GCNGC 2 cut(s) 403, 852
FspBI CTAG 3 cut(s) 159, 171, 954
GlaI GCGC 1 cut(s) 850
GluI GCNGC 2 cut(s) 403, 852
HaeIII GGCC 1 cut(s) 1195
HapII CCGG 2 cut(s) 7, 753
HhaI GCGC 1 cut(s) 851
Hin1II CATG 5 cut(s) 119, 324, 417, 727, 994
Hin6I GCGC 1 cut(s) 849
HinP1I GCGC 1 cut(s) 849
HinfI GANTC 6 cut(s) 155, 167, 389, 410, 545, 1064
HpaII CCGG 2 cut(s) 7, 753
HphI GGTGA 3 cut(s) 86, 516, 594
Hpy166II GTNNAC 1 cut(s) 1002
Hpy188I TCNGA 5 cut(s) 544, 1024, 1069, 1257, 1290
Hpy188III TCNNGA 5 cut(s) 25, 100, 269, 336, 1117
Hpy8I GTNNAC 1 cut(s) 1002
HpyAV CCTTC 8 cut(s) 318, 346, 495, 531, 537, 859, 926, 1204
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4IV ACGT 1 cut(s) 795
HpyCH4V TGCA 3 cut(s) 262, 563, 1190
HpyF10VI GCNNNNNNNGC 1 cut(s) 857
HpyF3I CTNAG 4 cut(s) 23, 398, 960, 1287
HpySE526I ACGT 1 cut(s) 795
Hsp92II CATG 5 cut(s) 119, 324, 417, 727, 994
HspAI GCGC 1 cut(s) 849
KpnI GGTACC 1 cut(s) 59
Ksp22I TGATCA 1 cut(s) 1269
Kzo9I GATC 7 cut(s) 326, 660, 771, 1113, 1134, 1269, 1277
LguI GCTCTTC 1 cut(s) 578
LmnI GCTCC 1 cut(s) 102
Lsp1109I GCAGC 1 cut(s) 863
LweI GCATC 2 cut(s) 271, 1177
MaeI CTAG 3 cut(s) 159, 171, 954
MaeII ACGT 1 cut(s) 795
MaeIII GTNAC 1 cut(s) 748
MalI GATC 7 cut(s) 328, 662, 773, 1115, 1136, 1271, 1279
MboI GATC 7 cut(s) 326, 660, 771, 1113, 1134, 1269, 1277
MfeI CAATTG 1 cut(s) 474
MflI RGATCY 1 cut(s) 1134
MhlI GDGCHC 1 cut(s) 1288
MlyI GAGTC 1 cut(s) 419
MmeI TCCRAC 1 cut(s) 650
MseI TTAA 4 cut(s) 41, 150, 237, 452
MspI CCGG 2 cut(s) 7, 753
MunI CAATTG 1 cut(s) 474
Mva1269I GAATGC 1 cut(s) 565
MwoI GCNNNNNNNGC 1 cut(s) 857
NcoI CCATGG 1 cut(s) 320
NdeI CATATG 1 cut(s) 679
NdeII GATC 7 cut(s) 326, 660, 771, 1113, 1134, 1269, 1277
NlaIII CATG 5 cut(s) 119, 324, 417, 727, 994
NlaIV GGNNCC 2 cut(s) 57, 428
NmuCI GTSAC 1 cut(s) 748
NspI RCATGY 2 cut(s) 119, 994
NspV TTCGAA 1 cut(s) 826
PciI ACATGT 2 cut(s) 115, 990
PciSI GCTCTTC 1 cut(s) 578
PcsI WCGNNNNNNNCGW 1 cut(s) 224
PctI GAATGC 1 cut(s) 565
PfeI GAWTC 5 cut(s) 155, 167, 389, 545, 1064
PkrI GCNGC 2 cut(s) 404, 853
Ple19I CGATCG 1 cut(s) 1280
PleI GAGTC 1 cut(s) 418
PpsI GAGTC 1 cut(s) 418
PpuMI RGGWCCY 1 cut(s) 426
PscI ACATGT 2 cut(s) 115, 990
Psp5II RGGWCCY 1 cut(s) 426
PspN4I GGNNCC 2 cut(s) 57, 428
PspPI GGNCC 2 cut(s) 426, 1193
PspPPI RGGWCCY 1 cut(s) 426
PsuI RGATCY 1 cut(s) 1134
PvuI CGATCG 1 cut(s) 1280
RsaI GTAC 3 cut(s) 57, 593, 921
RsaNI GTAC 3 cut(s) 56, 592, 920
SapI GCTCTTC 1 cut(s) 578
SaqAI TTAA 4 cut(s) 41, 150, 237, 452
SatI GCNGC 2 cut(s) 403, 852
Sau3AI GATC 7 cut(s) 326, 660, 771, 1113, 1134, 1269, 1277
Sau96I GGNCC 2 cut(s) 426, 1193
SchI GAGTC 1 cut(s) 419
SduI GDGCHC 1 cut(s) 1288
SfaNI GCATC 2 cut(s) 271, 1177
SfuI TTCGAA 1 cut(s) 826
SinI GGWCC 1 cut(s) 426
SsiI CCGC 2 cut(s) 59, 403
SspMI CTAG 3 cut(s) 159, 171, 954
StyI CCWWGG 2 cut(s) 320, 430
TaaI ACNGT 1 cut(s) 296
TaiI ACGT 1 cut(s) 798
TaqI TCGA 7 cut(s) 218, 227, 329, 422, 774, 826, 1280
TaqII GACCGA 1 cut(s) 673
TatI WGTACW 1 cut(s) 591
TauI GCSGC 1 cut(s) 405
TfiI GAWTC 5 cut(s) 155, 167, 389, 545, 1064
Tru1I TTAA 4 cut(s) 41, 150, 237, 452
Tru9I TTAA 4 cut(s) 41, 150, 237, 452
TscAI CASTG 1 cut(s) 301
TseFI GTSAC 1 cut(s) 748
TseI GCWGC 1 cut(s) 851
Tsp45I GTSAC 1 cut(s) 748
TspRI CASTG 1 cut(s) 301
VpaK11BI GGWCC 1 cut(s) 426
XapI RAATTY 6 cut(s) 190, 454, 743, 763, 1016, 1232
XceI RCATGY 2 cut(s) 119, 994
XmiI GTMKAC 1 cut(s) 1001
XspI CTAG 3 cut(s) 159, 171, 954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.