Prupe.5G064100_v2.0.a1

Cotton fibre expressed protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
7803426 .. 7805560
2135 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G064100.1

Sequence Viewer

Length: 1779 bp
ATGTGTTCTTCAATGGCAGAGAGTGAGACAGAGTCTAATTACAGCAAACACCAAAAGTTGGTCCCAGAACAAAACCATGAAAACCCAAGTAAGTTTTACAATCATTTTCTATACAAAGTTGCACTAGTTGTAGTTTTCTTTGTTATTCTCCCACTTTTTCCTTCACAAGCTCCTGAGTTCTTCAACCAAAGTGTACTCACCAGAAGCTGGGAGCTCCTGCACCTTCTCCTTGTTGGCATAGCAGTCTCTTATGGGCTTTTTAGCAGAAGAAATGACATAACAGAGAAGGAAAACACTAACTCAAAATTCGATAATGCTCATTCATATGTGTCTAGATTTCTTCAGGTGTCTTCAGTTTTTGATGATGAGACTGAAATTCCATCTGTCTCTGATGAGAACAAGGTCCAGTCCTGGAGTAGTCAGTATTACAGGAACGAACCGGTGGTGGTTGTAGCTCAAGAACACTCTGCTCTTGATGAACAGAGAGGTACCGCTTCAAGAATTGGTGAAAAGCCATTGCTTTTGCCTGTTAGAAGCTTAAAACAACATGTTCCAGACACGGGTAATATAGGTTCTGTTAATGAATCTAGTGCCAGTTCTGGTTCTCTAAGTAGGTCTAACTCAAGGTCAGGCTCGAGAAGATTTTCGAGCAAATCGAATAACAAAGCTCTAGGTGGTGAATTTGGAGGGTTGGATCATCAAGAATTGGAGGAGAAGTTGAAGGAAAGTGTTGTGCTTCCTTCTCCAATTCCATGGAGATCAAGATCAGGAAGGATGGATGTGAAGGAAGAAATTGTTAACAGTCCTCCAATGGAGGAATTTGAGCTCAACCGCCAAGAGTCTTGGGGTTCGAGGTCCCAAGGTTCTCGTTCTTCGAGATCGAATTCCATGTCTTCATCCCCAAGGCTGTCTCCTTCGCCATCACTTTCGTCTCCAAAGAAGGCATCTCCTTCACCTTCATTGTCATCGGAGTCTCAAGCCAAGAACGCCGAGGATTTGGGGAGGAAGAAGAGCTTTTACAAGTCCTGTCCTCCCCCGCCTCCGCCTCCCCCGCCAATGTTTTATAAGTCATCATCAATGAGATCAAACAGAGATGGGGTTTTGTATGAGAAGGACTTGAGGAGAAGCTTCAGTAGTGAAACAAGGGACTTGAATAGGAGCAATGGAGAATATGTGATGGGGAGAATGAACTCAGGGGTTGAAACCATGCATCAAAGCTATGTTGATGGTTTACCAATGGGGAAATCAATGAGAACAAGCAGAGCTGGAGAAAATAGGGCAGGGGCTTTGAGATCAGACAGAGAGATGGGAGAGTATGGATATGTAAATGGCGATGTGGAGAAAAACTTCAAGCAAGTTGAAGAAAATTTGGTGGAGAAAGCTGCAAGAAAGAGGGTGGGATTTGATGAAACTTCTTTTATTGGGACTGAGAACTTGGGGAATGAAAGCATCCCCAACATGCCAAACTCAGCTTTCAATGGATTTTCAGAGGAGGAGAAAGAAGATTTTCTCGACGGCGTGGTTATGGAATCGGAGGAAGAAACAGAAAGTGAGGATGACAACTTTGGAGGAAGTTTGATCCAGAAAGACATTGGAGAGACCCCAAAGCCAACTCCAAGGAATTTCGTTTCGGCTTCTAGCAGTGGAAGTGATGGAGGGCCTGATGTGGATAAGAAAGCTGATGAGTTCATAGCCAAATTCAGGGAGCAGATTAGGCTTCAGAGAATAGATTCTATCAAGAAATCGAGTGCTCAGATTAGTAGAAACTTGTCAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

593

Amino Acids

66.03

Weight (kDa)

5.82

Isoelectric Point (pI)

68.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1065
Acc65I GGTACC 1 cut(s) 488
AccB1I GGYRCC 1 cut(s) 488
AccB7I CCANNNNNTGG 2 cut(s) 58, 207
AciI CCGC 5 cut(s) 492, 832, 1037, 1043, 1052
AclWI GGATC 2 cut(s) 702, 1573
AcsI RAATTY 8 cut(s) 305, 375, 680, 818, 883, 1366, 1621, 1697
AcuI CTGAAG 4 cut(s) 326, 336, 1114, 1703
AfaI GTAC 2 cut(s) 195, 490
AfiI CCNNNNNNNGG 4 cut(s) 58, 207, 560, 1701
AflIII ACRYGT 1 cut(s) 547
AgeI ACCGGT 1 cut(s) 439
AgsI TTSAA 9 cut(s) 12, 184, 498, 721, 1153, 1202, 1351, 1361, 1477
AhlI ACTAGT 1 cut(s) 124
AjnI CCWGG 1 cut(s) 410
Alw21I GWGCWC 3 cut(s) 216, 828, 1753
Alw26I GTCTC 8 cut(s) 20, 250, 362, 391, 915, 936, 978, 1592
AlwI GGATC 2 cut(s) 702, 1573
AlwNI CAGNNNCTG 1 cut(s) 207
Ama87I CYCGRG 1 cut(s) 634
AoxI GGCC 1 cut(s) 1658
ApeKI GCWGC 1 cut(s) 1382
ApoI RAATTY 8 cut(s) 305, 375, 680, 818, 883, 1366, 1621, 1697
ArsI GACNNNNNNTTYG 2 cut(s) 875, 907
AsiGI ACCGGT 1 cut(s) 439
Asp700I GAANNNNTTC 4 cut(s) 643, 1346, 1506, 1729
Asp718I GGTACC 1 cut(s) 488
AspS9I GGNCC 4 cut(s) 61, 403, 855, 1658
AsuHPI GGTGA 4 cut(s) 190, 518, 689, 945
AvaI CYCGRG 1 cut(s) 634
AvaII GGWCC 3 cut(s) 61, 403, 855
BanI GGYRCC 1 cut(s) 488
BanII GRGCYC 2 cut(s) 216, 828
BarI GAAGNNNNNNTAC 2 cut(s) 1001, 1033
BbsI GAAGAC 2 cut(s) 342, 885
Bbv12I GWGCWC 3 cut(s) 216, 828, 1753
BbvI GCAGC 1 cut(s) 1369
BccI CCATC 8 cut(s) 388, 769, 928, 1088, 1171, 1220, 1300, 1646
BceAI ACGGC 1 cut(s) 1531
BciT130I CCWGG 1 cut(s) 412
BcoDI GTCTC 8 cut(s) 20, 250, 362, 391, 915, 936, 978, 1592
BcuI ACTAGT 1 cut(s) 124
BfaI CTAG 5 cut(s) 125, 333, 588, 671, 1638
BisI GCNGC 1 cut(s) 1383
BlsI GCNGC 1 cut(s) 1384
Bme1390I CCNGG 1 cut(s) 412
Bme18I GGWCC 3 cut(s) 61, 403, 855
BmeT110I CYCGRG 1 cut(s) 634
BmgT120I GGNCC 4 cut(s) 61, 403, 855, 1658
BmiI GGNNCC 3 cut(s) 63, 490, 857
BmrFI CCNGG 1 cut(s) 412
BmsI GCATC 3 cut(s) 953, 1219, 1458
BpiI GAAGAC 2 cut(s) 342, 885
BpmI CTGGAG 1 cut(s) 1287
BpuEI CTTGAG 4 cut(s) 441, 607, 960, 1138
BsaBI GATNNNNATC 1 cut(s) 763
BsaI GGTCTC 1 cut(s) 1592
BsaJI CCNNGG 5 cut(s) 752, 859, 902, 990, 1616
BsaWI WCCGGW 1 cut(s) 439
BsaXI ACNNNNNCTCC 4 cut(s) 701, 731, 1158, 1188
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 207, 560, 1701
Bse118I RCCGGY 1 cut(s) 439
Bse1I ACTGG 2 cut(s) 406, 594
Bse3DI GCAATG 2 cut(s) 515, 1168
Bse8I GATNNNNATC 1 cut(s) 763
BseBI CCWGG 1 cut(s) 412
BseDI CCNNGG 5 cut(s) 752, 859, 902, 990, 1616
BseGI GGATG 5 cut(s) 780, 784, 896, 1449, 1561
BseJI GATNNNNATC 1 cut(s) 763
BseLI CCNNNNNNNGG 4 cut(s) 58, 207, 560, 1701
BseMI GCAATG 2 cut(s) 515, 1168
BseMII CTCAG 5 cut(s) 165, 1206, 1419, 1482, 1766
BseNI ACTGG 2 cut(s) 406, 594
BseRI GAGGAG 4 cut(s) 725, 1135, 1505, 1508
BseXI GCAGC 1 cut(s) 1369
BseYI CCCAGC 1 cut(s) 207
BsgI GTGCAG 1 cut(s) 203
BshFI GGCC 1 cut(s) 1660
BshNI GGYRCC 1 cut(s) 488
BshTI ACCGGT 1 cut(s) 439
BsiHKAI GWGCWC 3 cut(s) 216, 828, 1753
BsiHKCI CYCGRG 1 cut(s) 634
BsiSI CCGG 1 cut(s) 440
BslFI GGGAC 4 cut(s) 47, 841, 1160, 1438
BslI CCNNNNNNNGG 4 cut(s) 58, 207, 560, 1701
BsmAI GTCTC 8 cut(s) 20, 250, 362, 391, 915, 936, 978, 1592
BsmBI CGTCTC 1 cut(s) 936
BsmFI GGGAC 4 cut(s) 47, 841, 1160, 1438
BsnI GGCC 1 cut(s) 1660
Bso31I GGTCTC 1 cut(s) 1592
BsoBI CYCGRG 1 cut(s) 634
Bsp1286I GDGCHC 3 cut(s) 216, 828, 1753
Bsp143I GATC 7 cut(s) 694, 758, 764, 878, 1082, 1292, 1578
Bsp19I CCATGG 1 cut(s) 752
BspACI CCGC 5 cut(s) 492, 832, 1037, 1043, 1052
BspANI GGCC 1 cut(s) 1660
BspCNI CTCAG 5 cut(s) 166, 1205, 1420, 1481, 1765
BspLI GGNNCC 3 cut(s) 63, 490, 857
BspPI GGATC 2 cut(s) 702, 1573
BspQI GCTCTTC 1 cut(s) 1004
BspT107I GGYRCC 1 cut(s) 488
BspTNI GGTCTC 1 cut(s) 1592
BsrDI GCAATG 2 cut(s) 515, 1168
BsrFI RCCGGY 1 cut(s) 439
BsrI ACTGG 2 cut(s) 406, 594
BssAI RCCGGY 1 cut(s) 439
BssECI CCNNGG 5 cut(s) 752, 859, 902, 990, 1616
BssMI GATC 7 cut(s) 694, 758, 764, 878, 1082, 1292, 1578
BssT1I CCWWGG 4 cut(s) 752, 859, 902, 1616
Bst2UI CCWGG 1 cut(s) 412
Bst4CI ACNGT 1 cut(s) 803
Bst6I CTCTTC 1 cut(s) 1004
BstDEI CTNAG 6 cut(s) 174, 608, 1192, 1428, 1468, 1752
BstDSI CCRYGG 1 cut(s) 752
BstF5I GGATG 5 cut(s) 780, 784, 896, 1449, 1561
BstKTI GATC 7 cut(s) 697, 761, 767, 881, 1085, 1295, 1581
BstMAI GTCTC 8 cut(s) 20, 250, 362, 391, 915, 936, 978, 1592
BstMBI GATC 7 cut(s) 694, 758, 764, 878, 1082, 1292, 1578
BstMWI GCNNNNNNNGC 3 cut(s) 986, 1051, 1714
BstNI CCWGG 1 cut(s) 412
BstNSI RCATGY 2 cut(s) 551, 1462
BstSCI CCNGG 1 cut(s) 410
BstV1I GCAGC 1 cut(s) 1369
BstV2I GAAGAC 2 cut(s) 342, 885
BstXI CCANNNNNNTGG 1 cut(s) 753
BsuRI GGCC 1 cut(s) 1660
BtgI CCRYGG 1 cut(s) 752
BtgZI GCGATG 1 cut(s) 1347
BtsCI GGATG 5 cut(s) 780, 784, 896, 1449, 1561
BtsI GCAGTG 1 cut(s) 1648
BtsIMutI CAGTG 1 cut(s) 1648
CaiI CAGNNNCTG 1 cut(s) 207
Cfr10I RCCGGY 1 cut(s) 439
Cfr13I GGNCC 4 cut(s) 61, 403, 855, 1658
Csp6I GTAC 2 cut(s) 194, 489
CspAI ACCGGT 1 cut(s) 439
CviAII CATG 6 cut(s) 77, 548, 753, 889, 1207, 1459
CviQI GTAC 2 cut(s) 194, 489
DdeI CTNAG 6 cut(s) 174, 608, 1192, 1428, 1468, 1752
DpnI GATC 7 cut(s) 696, 760, 766, 880, 1084, 1294, 1580
DpnII GATC 7 cut(s) 694, 758, 764, 878, 1082, 1292, 1578
Eam1104I CTCTTC 1 cut(s) 1004
EarI CTCTTC 1 cut(s) 1004
EciI GGCGGA 1 cut(s) 1032
Ecl136II GAGCTC 2 cut(s) 214, 826
Eco130I CCWWGG 4 cut(s) 752, 859, 902, 1616
Eco24I GRGCYC 2 cut(s) 216, 828
Eco31I GGTCTC 1 cut(s) 1592
Eco47I GGWCC 3 cut(s) 61, 403, 855
Eco53kI GAGCTC 2 cut(s) 214, 826
Eco57I CTGAAG 4 cut(s) 326, 336, 1114, 1703
Eco88I CYCGRG 1 cut(s) 634
EcoICRI GAGCTC 2 cut(s) 214, 826
EcoO109I RGGNCCY 2 cut(s) 855, 1658
EcoRI GAATTC 1 cut(s) 883
EcoRII CCWGG 1 cut(s) 410
EcoT14I CCWWGG 4 cut(s) 752, 859, 902, 1616
EcoT22I ATGCAT 1 cut(s) 1212
EcoT38I GRGCYC 2 cut(s) 216, 828
ErhI CCWWGG 4 cut(s) 752, 859, 902, 1616
Esp3I CGTCTC 1 cut(s) 936
FaeI CATG 6 cut(s) 80, 551, 756, 892, 1210, 1462
FalI AAGNNNNNCTT 2 cut(s) 998, 1030
FaqI GGGAC 4 cut(s) 47, 841, 1160, 1438
FatI CATG 6 cut(s) 76, 547, 752, 888, 1206, 1458
FauI CCCGC 2 cut(s) 1044, 1059
FauNDI CATATG 1 cut(s) 325
Fnu4HI GCNGC 1 cut(s) 1383
FokI GGATG 5 cut(s) 787, 791, 883, 1436, 1568
FriOI GRGCYC 2 cut(s) 216, 828
Fsp4HI GCNGC 1 cut(s) 1383
FspBI CTAG 5 cut(s) 125, 333, 588, 671, 1638
GluI GCNGC 1 cut(s) 1383
GsaI CCCAGC 1 cut(s) 211
GsuI CTGGAG 2 cut(s) 433, 1287
HaeIII GGCC 1 cut(s) 1660
HapII CCGG 1 cut(s) 440
Hin1II CATG 6 cut(s) 80, 551, 756, 892, 1210, 1462
HincII GTYRAC 1 cut(s) 799
HindII GTYRAC 1 cut(s) 799
HindIII AAGCTT 2 cut(s) 535, 1126
HinfI GANTC 6 cut(s) 32, 584, 839, 971, 1529, 1730
HpaI GTTAAC 1 cut(s) 799
HpaII CCGG 1 cut(s) 440
HphI GGTGA 4 cut(s) 190, 518, 689, 945
Hpy166II GTNNAC 3 cut(s) 194, 799, 1232
Hpy188I TCNGA 7 cut(s) 391, 970, 1297, 1489, 1534, 1722, 1755
Hpy8I GTNNAC 3 cut(s) 194, 799, 1232
Hpy99I CGWCG 1 cut(s) 1517
HpyCH4III ACNGT 1 cut(s) 803
HpyCH4V TGCA 4 cut(s) 122, 220, 1210, 1385
HpyF10VI GCNNNNNNNGC 3 cut(s) 986, 1051, 1714
HpyF3I CTNAG 6 cut(s) 174, 608, 1192, 1428, 1468, 1752
Hsp92II CATG 6 cut(s) 80, 551, 756, 892, 1210, 1462
KpnI GGTACC 1 cut(s) 492
KspAI GTTAAC 1 cut(s) 799
Kzo9I GATC 7 cut(s) 694, 758, 764, 878, 1082, 1292, 1578
LguI GCTCTTC 1 cut(s) 1004
LmnI GCTCC 5 cut(s) 175, 211, 219, 1158, 1705
Lsp1109I GCAGC 1 cut(s) 1369
LweI GCATC 3 cut(s) 953, 1219, 1458
MaeI CTAG 5 cut(s) 125, 333, 588, 671, 1638
MalI GATC 7 cut(s) 696, 760, 766, 880, 1084, 1294, 1580
MboI GATC 7 cut(s) 694, 758, 764, 878, 1082, 1292, 1578
MhlI GDGCHC 3 cut(s) 216, 828, 1753
MlyI GAGTC 3 cut(s) 41, 848, 980
MmeI TCCRAC 1 cut(s) 672
Mph1103I ATGCAT 1 cut(s) 1212
MroXI GAANNNNTTC 4 cut(s) 643, 1346, 1506, 1729
MseI TTAA 3 cut(s) 539, 579, 798
MslI CAYNNNNRTG 1 cut(s) 324
MspI CCGG 1 cut(s) 440
MspR9I CCNGG 1 cut(s) 412
MvaI CCWGG 1 cut(s) 412
MwoI GCNNNNNNNGC 3 cut(s) 986, 1051, 1714
NcoI CCATGG 1 cut(s) 752
NdeI CATATG 1 cut(s) 325
NdeII GATC 7 cut(s) 694, 758, 764, 878, 1082, 1292, 1578
NlaIII CATG 6 cut(s) 80, 551, 756, 892, 1210, 1462
NlaIV GGNNCC 3 cut(s) 63, 490, 857
NmeAIII GCCGAG 1 cut(s) 1015
NsiI ATGCAT 1 cut(s) 1212
NspI RCATGY 2 cut(s) 551, 1462
PaeR7I CTCGAG 1 cut(s) 634
PciI ACATGT 1 cut(s) 547
PciSI GCTCTTC 1 cut(s) 1004
PcsI WCGNNNNNNNCGW 1 cut(s) 653
PdmI GAANNNNTTC 4 cut(s) 643, 1346, 1506, 1729
PfeI GAWTC 3 cut(s) 584, 1529, 1730
PflFI GACNNNGTC 1 cut(s) 31
PflMI CCANNNNNTGG 2 cut(s) 58, 207
PfoI TCCNGGA 1 cut(s) 410
PinAI ACCGGT 1 cut(s) 439
PkrI GCNGC 1 cut(s) 1384
PleI GAGTC 3 cut(s) 40, 847, 979
PpsI GAGTC 3 cut(s) 40, 847, 979
PpuMI RGGWCCY 1 cut(s) 855
PscI ACATGT 1 cut(s) 547
PsiI TTATAA 1 cut(s) 1065
Psp124BI GAGCTC 2 cut(s) 216, 828
Psp5II RGGWCCY 1 cut(s) 855
Psp6I CCWGG 1 cut(s) 410
PspFI CCCAGC 1 cut(s) 207
PspGI CCWGG 1 cut(s) 410
PspN4I GGNNCC 3 cut(s) 63, 490, 857
PspPI GGNCC 4 cut(s) 61, 403, 855, 1658
PspPPI RGGWCCY 1 cut(s) 855
PsrI GAACNNNNNNTAC 2 cut(s) 556, 588
PstNI CAGNNNCTG 1 cut(s) 207
PsyI GACNNNGTC 1 cut(s) 31
RsaI GTAC 2 cut(s) 195, 490
RsaNI GTAC 2 cut(s) 194, 489
RseI CAYNNNNRTG 1 cut(s) 324
SacI GAGCTC 2 cut(s) 216, 828
SapI GCTCTTC 1 cut(s) 1004
SaqAI TTAA 3 cut(s) 539, 579, 798
SatI GCNGC 1 cut(s) 1383
Sau3AI GATC 7 cut(s) 694, 758, 764, 878, 1082, 1292, 1578
Sau96I GGNCC 4 cut(s) 61, 403, 855, 1658
SchI GAGTC 3 cut(s) 41, 848, 980
ScrFI CCNGG 1 cut(s) 412
SduI GDGCHC 3 cut(s) 216, 828, 1753
SfaNI GCATC 3 cut(s) 953, 1219, 1458
Sfr274I CTCGAG 1 cut(s) 634
SinI GGWCC 3 cut(s) 61, 403, 855
SlaI CTCGAG 1 cut(s) 634
SmiMI CAYNNNNRTG 1 cut(s) 324
SmlI CTYRAG 5 cut(s) 456, 622, 634, 975, 1117
SmoI CTYRAG 5 cut(s) 456, 622, 634, 975, 1117
SpeI ACTAGT 1 cut(s) 124
SsiI CCGC 5 cut(s) 492, 832, 1037, 1043, 1052
SspMI CTAG 5 cut(s) 125, 333, 588, 671, 1638
SstI GAGCTC 2 cut(s) 216, 828
StyD4I CCNGG 1 cut(s) 410
StyI CCWWGG 4 cut(s) 752, 859, 902, 1616
TaaI ACNGT 1 cut(s) 803
TaqI TCGA 9 cut(s) 309, 635, 647, 656, 851, 875, 881, 1512, 1745
TatI WGTACW 1 cut(s) 193
TfiI GAWTC 3 cut(s) 584, 1529, 1730
Tru1I TTAA 3 cut(s) 539, 579, 798
Tru9I TTAA 3 cut(s) 539, 579, 798
TscAI CASTG 1 cut(s) 1648
TseI GCWGC 1 cut(s) 1382
TspRI CASTG 1 cut(s) 1648
Tth111I GACNNNGTC 1 cut(s) 31
Van91I CCANNNNNTGG 2 cut(s) 58, 207
VpaK11BI GGWCC 3 cut(s) 61, 403, 855
XapI RAATTY 8 cut(s) 305, 375, 680, 818, 883, 1366, 1621, 1697
XbaI TCTAGA 1 cut(s) 332
XceI RCATGY 2 cut(s) 551, 1462
XcmI CCANNNNNNNNNTGG 1 cut(s) 1589
XhoI CTCGAG 1 cut(s) 634
XmnI GAANNNNTTC 4 cut(s) 643, 1346, 1506, 1729
XspI CTAG 5 cut(s) 125, 333, 588, 671, 1638
Zsp2I ATGCAT 1 cut(s) 1212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.