Rh7CG224500

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0010777
Physical Location & Seq
Reverse (-)
20763159 .. 20765835
2677 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG224500.1

Sequence Viewer

Length: 1746 bp
ATGTGTTCTTCAATGGCAGAGCCAGAATCAGAGTCTTACACCAAACCCCAAAAGTTGGTCTCATCAGATCAAAACCATGAAAACCCAAGTAAGTTCTACAATCATCTTCTCTACAAAGTTGCTCTAGTTGTAGTTTTCTTCGTTATTCTCCCTCTTTTTCCATCACAAGCTCCTGAGTTCATAAACCAAAGTGTTGTAACCAGAAGCTGGGAGCTTGTTCATCTCCTCCTAGTTGGTATAGCCGTCTCTTATGGCTTATTTAGCAGACTAAATGAAAAAGTAGAGAAAGAAAACAACACGAAATTCGATAATGCTCATTCCTATGTGTCTAGAATTCTTGAGGTGTCCTCAGTTTTTGATGATGAGGCAGAAACCTCACCTGGACCTGATGAAAACAAGGTCCAGGCATGGAGTAGTCAGTATTTTAGGAATGAACCTGTGGTGGTTGTGGCTCAAGAACACTCTGTTCTTGATGAGCAGAGAGATAGCAGTTCAATACTTGGTGAAAAGCCATTGCTTTTGCCTGTTAGGAGCCTAAAACAACGTGTTCCTGACCAGGACAACATAGAGTCCGTTAATGAATCTAGTGTTAATTCTGGTGGTGCTCTGAGTAGGTCTAATTCTAGGTCTGGTTCAAGAAGGTTTTCGAGCAAATCCAGTAAGGCTAAAGCTGGTGAAATTGGGGGTCTAGATCATCAAGAATTGGAGGAGAAATTGAAGGAGAGTGTTGTGCTTCCTTCTCCAATTCCGTGGCGATCAAGATCAGGAAGGTTGGAAGTAAAGGAGGATCTTGTTAGTAGTACTCCAATGGAGGAACCTGAATTTAACCGCCTAGATCCTCGGGGTGTTTCGAGGTCCCAAAGCTCTCGTTCATCTCGATCCGAGTCAGTGTCTTCATCACCAAAGCTGTCTCCTTCGACATCACTTTTGTCTCCAAAGAAGTTATCTCCTGCACCTTCATTGTCATCAGAAGCTCAAGCCAAGAGTGTTGAGGATGTGGGGAGGAAGAAGAGCTTTTACAAGACTTCTATTCCCCCACCTCCTCCGCCCCCACCGATGTTTTATAAATCATCATCATTGAGGCCAAGCAGTGATGAGGTTTCGTATGAGAAGGATTTGAGGAGAAGCTTTACTAGTGAAGCAAAGAACTTGAATAGAAGCAATGGAGAATTTATGATGGGCAGAGTTAATTCGGGGGTTGAAACAAAGCATAGGCTGAGCCATGTTGATGGCATTTCAATGGGAAAGTCTGTCAGAACAACCAGAGCTGGAGAACAAGGATATGTAAATGGGAAGGTGGAGCAAAGCGCTAAGGAAGTTGAAGCTAATTTGGTTGAGAATGTAACAAGAAAAAGGGTGGGGTTCGATGAATCTTCATTCTGGACTGAGCAATTGAGCCATGAAAGCAGCATTCCCAACAACCCCAAGTCATCAGCTTTTCAGGAATTTTCCGAGGAAGATGAGAAGGAAAATCTTTTCGATAAGGAGCTTATGGAATCGGATGAAGAAACCGAAAGCGAGGATGACGACACTGAAGGAGGTTTTTCTCCTAAAGACATTGGAGAGAGCCCAAAGTCAAGTCCAAGGCCCTATCAACCTGTTTCTGGGAGTGCAAGTGATGGAGGGCCTGATGTGGATAAGAAGGCAGATGAGTTCATAGCTAAATTCAGGGAGCAGATTCGGCTTCAGAGAATAGATTCGATCAAGAAATCGAGTGCTCAGATTAGTAAAAACTTGTCGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

581

Amino Acids

64.59

Weight (kDa)

5.54

Isoelectric Point (pI)

66.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 543 - 573 1.6e-13 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1065
AccB7I CCANNNNNTGG 2 cut(s) 55, 207
AciI CCGC 2 cut(s) 829, 1046
AclWI GGATC 3 cut(s) 795, 830, 873
AcsI RAATTY 6 cut(s) 302, 333, 821, 1169, 1445, 1664
AcuI CTGAAG 2 cut(s) 1554, 1670
AfaI GTAC 1 cut(s) 802
AfeI AGCGCT 1 cut(s) 1309
AfiI CCNNNNNNNGG 3 cut(s) 55, 207, 1604
AflIII ACRYGT 1 cut(s) 544
AgsI TTSAA 8 cut(s) 12, 495, 636, 718, 1153, 1202, 1239, 1322
AhlI ACTAGT 1 cut(s) 1133
AjnI CCWGG 3 cut(s) 379, 402, 555
Alw21I GWGCWC 2 cut(s) 607, 1720
Alw26I GTCTC 4 cut(s) 64, 250, 915, 936
AlwI GGATC 3 cut(s) 795, 830, 873
AlwNI CAGNNNCTG 1 cut(s) 207
Ama87I CYCGRG 1 cut(s) 840
Aor51HI AGCGCT 1 cut(s) 1309
AoxI GGCC 3 cut(s) 1082, 1586, 1625
ApeKI GCWGC 1 cut(s) 1407
ApoI RAATTY 6 cut(s) 302, 333, 821, 1169, 1445, 1664
ArsI GACNNNNNNTTYG 2 cut(s) 910, 942
Asp700I GAANNNNTTC 2 cut(s) 643, 1696
AspLEI GCGC 1 cut(s) 1310
AspS9I GGNCC 5 cut(s) 383, 400, 855, 1587, 1625
AsuHPI GGTGA 4 cut(s) 369, 515, 686, 891
AvaI CYCGRG 1 cut(s) 840
AvaII GGWCC 3 cut(s) 383, 400, 855
BanII GRGCYC 1 cut(s) 1571
BarI GAAGNNNNNNTAC 2 cut(s) 1001, 1033
BbsI GAAGAC 1 cut(s) 885
Bbv12I GWGCWC 2 cut(s) 607, 1720
BbvI GCAGC 1 cut(s) 1419
BccI CCATC 4 cut(s) 169, 1171, 1223, 1613
BceAI ACGGC 1 cut(s) 227
BciT130I CCWGG 3 cut(s) 381, 404, 557
BcoDI GTCTC 4 cut(s) 64, 250, 915, 936
BcuI ACTAGT 1 cut(s) 1133
BfaI CTAG 8 cut(s) 125, 230, 330, 585, 624, 689, 833, 1134
BfoI RGCGCY 1 cut(s) 1311
BisI GCNGC 1 cut(s) 1408
BlpI GCTNAGC 1 cut(s) 1217
BlsI GCNGC 1 cut(s) 1409
BmcAI AGTACT 1 cut(s) 802
Bme1390I CCNGG 3 cut(s) 381, 404, 557
Bme18I GGWCC 3 cut(s) 383, 400, 855
BmeT110I CYCGRG 1 cut(s) 840
BmgT120I GGNCC 5 cut(s) 383, 400, 855, 1587, 1625
BmiI GGNNCC 3 cut(s) 533, 816, 857
BmrFI CCNGG 3 cut(s) 381, 404, 557
BpiI GAAGAC 1 cut(s) 885
BplI GAGNNNNNCTC 2 cut(s) 332, 364
BpmI CTGGAG 1 cut(s) 1290
Bpu10I CCTNAGC 1 cut(s) 1311
Bpu1102I GCTNAGC 1 cut(s) 1217
BpuEI CTTGAG 3 cut(s) 359, 438, 960
BsaBI GATNNNNATC 1 cut(s) 760
BsaI GGTCTC 1 cut(s) 64
BsaJI CCNNGG 4 cut(s) 749, 839, 1452, 1583
BsaXI ACNNNNNCTCC 2 cut(s) 1600, 1630
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 207, 1604
Bse1I ACTGG 1 cut(s) 657
Bse3DI GCAATG 2 cut(s) 512, 1168
Bse8I GATNNNNATC 1 cut(s) 760
BseBI CCWGG 3 cut(s) 381, 404, 557
BseDI CCNNGG 4 cut(s) 749, 839, 1452, 1583
BseGI GGATG 3 cut(s) 1000, 1507, 1528
BseJI GATNNNNATC 1 cut(s) 760
BseLI CCNNNNNNNGG 3 cut(s) 55, 207, 1604
BseMI GCAATG 2 cut(s) 512, 1168
BseMII CTCAG 6 cut(s) 165, 363, 599, 1208, 1377, 1733
BseNI ACTGG 1 cut(s) 657
BseRI GAGGAG 4 cut(s) 215, 722, 1032, 1135
BseXI GCAGC 1 cut(s) 1419
BseYI CCCAGC 1 cut(s) 207
BsgI GTGCAG 1 cut(s) 936
BshFI GGCC 3 cut(s) 1084, 1588, 1627
BsiHKAI GWGCWC 2 cut(s) 607, 1720
BsiHKCI CYCGRG 1 cut(s) 840
BslFI GGGAC 1 cut(s) 841
BslI CCNNNNNNNGG 3 cut(s) 55, 207, 1604
BsmAI GTCTC 4 cut(s) 64, 250, 915, 936
BsmBI CGTCTC 1 cut(s) 250
BsmFI GGGAC 1 cut(s) 841
BsmI GAATGC 1 cut(s) 1410
BsnI GGCC 3 cut(s) 1084, 1588, 1627
Bso31I GGTCTC 1 cut(s) 64
BsoBI CYCGRG 1 cut(s) 840
Bsp1286I GDGCHC 3 cut(s) 607, 1571, 1720
Bsp143I GATC 8 cut(s) 67, 691, 755, 761, 787, 835, 878, 1701
Bsp1720I GCTNAGC 1 cut(s) 1217
BspACI CCGC 2 cut(s) 829, 1046
BspANI GGCC 3 cut(s) 1084, 1588, 1627
BspCNI CTCAG 6 cut(s) 166, 362, 600, 1209, 1378, 1732
BspLI GGNNCC 3 cut(s) 533, 816, 857
BspPI GGATC 3 cut(s) 795, 830, 873
BspQI GCTCTTC 1 cut(s) 1004
BspTNI GGTCTC 1 cut(s) 64
BsrDI GCAATG 2 cut(s) 512, 1168
BsrI ACTGG 1 cut(s) 657
BssECI CCNNGG 4 cut(s) 749, 839, 1452, 1583
BssMI GATC 8 cut(s) 67, 691, 755, 761, 787, 835, 878, 1701
BssT1I CCWWGG 1 cut(s) 1583
Bst2UI CCWGG 3 cut(s) 381, 404, 557
Bst6I CTCTTC 1 cut(s) 1004
BstDEI CTNAG 7 cut(s) 174, 349, 608, 1217, 1311, 1386, 1719
BstDSI CCRYGG 1 cut(s) 749
BstF5I GGATG 3 cut(s) 1000, 1507, 1528
BstH2I RGCGCY 1 cut(s) 1311
BstHHI GCGC 1 cut(s) 1310
BstKTI GATC 8 cut(s) 70, 694, 758, 764, 790, 838, 881, 1704
BstMAI GTCTC 4 cut(s) 64, 250, 915, 936
BstMBI GATC 8 cut(s) 67, 691, 755, 761, 787, 835, 878, 1701
BstMWI GCNNNNNNNGC 3 cut(s) 261, 1404, 1681
BstNI CCWGG 3 cut(s) 381, 404, 557
BstSCI CCNGG 3 cut(s) 379, 402, 555
BstV1I GCAGC 1 cut(s) 1419
BstV2I GAAGAC 1 cut(s) 885
BstX2I RGATCY 2 cut(s) 787, 835
BstXI CCANNNNNNTGG 2 cut(s) 750, 1229
BstYI RGATCY 2 cut(s) 787, 835
BsuRI GGCC 3 cut(s) 1084, 1588, 1627
BtgI CCRYGG 1 cut(s) 749
BtsCI GGATG 3 cut(s) 1000, 1507, 1528
BtsI GCAGTG 1 cut(s) 1096
BtsIMutI CAGTG 3 cut(s) 894, 1096, 1530
CaiI CAGNNNCTG 1 cut(s) 207
CfoI GCGC 1 cut(s) 1310
Cfr13I GGNCC 5 cut(s) 383, 400, 855, 1587, 1625
Csp6I GTAC 1 cut(s) 801
CviAII CATG 4 cut(s) 77, 408, 1223, 1400
CviQI GTAC 1 cut(s) 801
DdeI CTNAG 7 cut(s) 174, 349, 608, 1217, 1311, 1386, 1719
DpnI GATC 8 cut(s) 69, 693, 757, 763, 789, 837, 880, 1703
DpnII GATC 8 cut(s) 67, 691, 755, 761, 787, 835, 878, 1701
Eam1104I CTCTTC 1 cut(s) 1004
EarI CTCTTC 1 cut(s) 1004
EciI GGCGGA 1 cut(s) 1035
Eco130I CCWWGG 1 cut(s) 1583
Eco24I GRGCYC 1 cut(s) 1571
Eco31I GGTCTC 1 cut(s) 64
Eco47I GGWCC 3 cut(s) 383, 400, 855
Eco47III AGCGCT 1 cut(s) 1309
Eco57I CTGAAG 2 cut(s) 1554, 1670
Eco88I CYCGRG 1 cut(s) 840
EcoO109I RGGNCCY 3 cut(s) 855, 1587, 1625
EcoRI GAATTC 1 cut(s) 333
EcoRII CCWGG 3 cut(s) 379, 402, 555
EcoT14I CCWWGG 1 cut(s) 1583
EcoT38I GRGCYC 1 cut(s) 1571
ErhI CCWWGG 1 cut(s) 1583
Esp3I CGTCTC 1 cut(s) 250
FaeI CATG 4 cut(s) 80, 411, 1226, 1403
FalI AAGNNNNNCTT 2 cut(s) 998, 1030
FaqI GGGAC 1 cut(s) 841
FatI CATG 4 cut(s) 76, 407, 1222, 1399
Fnu4HI GCNGC 1 cut(s) 1408
FokI GGATG 3 cut(s) 1007, 1514, 1535
FriOI GRGCYC 1 cut(s) 1571
Fsp4HI GCNGC 1 cut(s) 1408
FspBI CTAG 8 cut(s) 125, 230, 330, 585, 624, 689, 833, 1134
GlaI GCGC 1 cut(s) 1309
GluI GCNGC 1 cut(s) 1408
GsaI CCCAGC 1 cut(s) 211
GsuI CTGGAG 1 cut(s) 1290
HaeII RGCGCY 1 cut(s) 1311
HaeIII GGCC 3 cut(s) 1084, 1588, 1627
HhaI GCGC 1 cut(s) 1310
Hin1II CATG 4 cut(s) 80, 411, 1226, 1403
Hin6I GCGC 1 cut(s) 1308
HinP1I GCGC 1 cut(s) 1308
HindIII AAGCTT 1 cut(s) 1126
HinfI GANTC 9 cut(s) 26, 32, 569, 581, 884, 1370, 1496, 1678, 1697
HphI GGTGA 4 cut(s) 369, 515, 686, 891
HpyCH4IV ACGT 1 cut(s) 544
HpyCH4V TGCA 2 cut(s) 953, 1613
HpyF10VI GCNNNNNNNGC 3 cut(s) 261, 1404, 1681
HpyF3I CTNAG 7 cut(s) 174, 349, 608, 1217, 1311, 1386, 1719
HpySE526I ACGT 1 cut(s) 544
Hsp92II CATG 4 cut(s) 80, 411, 1226, 1403
HspAI GCGC 1 cut(s) 1308
Kzo9I GATC 8 cut(s) 67, 691, 755, 761, 787, 835, 878, 1701
LguI GCTCTTC 1 cut(s) 1004
LmnI GCTCC 6 cut(s) 175, 211, 531, 1300, 1486, 1672
Lsp1109I GCAGC 1 cut(s) 1419
MaeI CTAG 8 cut(s) 125, 230, 330, 585, 624, 689, 833, 1134
MaeII ACGT 1 cut(s) 544
MaeIII GTNAC 2 cut(s) 196, 1342
MalI GATC 8 cut(s) 69, 693, 757, 763, 789, 837, 880, 1703
MboI GATC 8 cut(s) 67, 691, 755, 761, 787, 835, 878, 1701
MboII GAAGA 8 cut(s) 98, 130, 885, 1018, 1021, 1365, 1469, 1517
MfeI CAATTG 1 cut(s) 1391
MflI RGATCY 2 cut(s) 787, 835
MhlI GDGCHC 3 cut(s) 607, 1571, 1720
MlyI GAGTC 3 cut(s) 41, 578, 893
MmeI TCCRAC 1 cut(s) 753
MroXI GAANNNNTTC 2 cut(s) 643, 1696
MseI TTAA 4 cut(s) 576, 591, 825, 1188
MslI CAYNNNNRTG 3 cut(s) 321, 1227, 1238
MspR9I CCNGG 3 cut(s) 381, 404, 557
MunI CAATTG 1 cut(s) 1391
Mva1269I GAATGC 1 cut(s) 1410
MvaI CCWGG 3 cut(s) 381, 404, 557
MwoI GCNNNNNNNGC 3 cut(s) 261, 1404, 1681
NdeII GATC 8 cut(s) 67, 691, 755, 761, 787, 835, 878, 1701
NlaIII CATG 4 cut(s) 80, 411, 1226, 1403
NlaIV GGNNCC 3 cut(s) 533, 816, 857
PciSI GCTCTTC 1 cut(s) 1004
PcsI WCGNNNNNNNCGW 1 cut(s) 874
PctI GAATGC 1 cut(s) 1410
PdmI GAANNNNTTC 2 cut(s) 643, 1696
PfeI GAWTC 6 cut(s) 26, 581, 1370, 1496, 1678, 1697
PflMI CCANNNNNTGG 2 cut(s) 55, 207
PkrI GCNGC 1 cut(s) 1409
PleI GAGTC 3 cut(s) 40, 577, 892
PpsI GAGTC 3 cut(s) 40, 577, 892
PpuMI RGGWCCY 1 cut(s) 855
PsiI TTATAA 1 cut(s) 1065
Psp5II RGGWCCY 1 cut(s) 855
Psp6I CCWGG 3 cut(s) 379, 402, 555
PspFI CCCAGC 1 cut(s) 207
PspGI CCWGG 3 cut(s) 379, 402, 555
PspN4I GGNNCC 3 cut(s) 533, 816, 857
PspPI GGNCC 5 cut(s) 383, 400, 855, 1587, 1625
PspPPI RGGWCCY 1 cut(s) 855
PstNI CAGNNNCTG 1 cut(s) 207
PsuI RGATCY 2 cut(s) 787, 835
RsaI GTAC 1 cut(s) 802
RsaNI GTAC 1 cut(s) 801
RseI CAYNNNNRTG 3 cut(s) 321, 1227, 1238
SapI GCTCTTC 1 cut(s) 1004
SaqAI TTAA 4 cut(s) 576, 591, 825, 1188
SatI GCNGC 1 cut(s) 1408
Sau3AI GATC 8 cut(s) 67, 691, 755, 761, 787, 835, 878, 1701
Sau96I GGNCC 5 cut(s) 383, 400, 855, 1587, 1625
ScaI AGTACT 1 cut(s) 802
SchI GAGTC 3 cut(s) 41, 578, 893
ScrFI CCNGG 3 cut(s) 381, 404, 557
SduI GDGCHC 3 cut(s) 607, 1571, 1720
SinI GGWCC 3 cut(s) 383, 400, 855
SmiMI CAYNNNNRTG 3 cut(s) 321, 1227, 1238
SmlI CTYRAG 3 cut(s) 338, 453, 975
SmoI CTYRAG 3 cut(s) 338, 453, 975
SpeI ACTAGT 1 cut(s) 1133
SsiI CCGC 2 cut(s) 829, 1046
SspMI CTAG 8 cut(s) 125, 230, 330, 585, 624, 689, 833, 1134
StyD4I CCNGG 3 cut(s) 379, 402, 555
StyI CCWWGG 1 cut(s) 1583
TaiI ACGT 1 cut(s) 547
TatI WGTACW 1 cut(s) 800
TfiI GAWTC 6 cut(s) 26, 581, 1370, 1496, 1678, 1697
Tru1I TTAA 4 cut(s) 576, 591, 825, 1188
Tru9I TTAA 4 cut(s) 576, 591, 825, 1188
TscAI CASTG 3 cut(s) 894, 1096, 1537
TseI GCWGC 1 cut(s) 1407
TspGWI ACGGA 2 cut(s) 562, 738
TspRI CASTG 3 cut(s) 894, 1096, 1537
Van91I CCANNNNNTGG 2 cut(s) 55, 207
VpaK11BI GGWCC 3 cut(s) 383, 400, 855
XapI RAATTY 6 cut(s) 302, 333, 821, 1169, 1445, 1664
XbaI TCTAGA 2 cut(s) 329, 688
XmnI GAANNNNTTC 2 cut(s) 643, 1696
XspI CTAG 8 cut(s) 125, 230, 330, 585, 624, 689, 833, 1134
ZrmI AGTACT 1 cut(s) 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.