MD06G1054900.v1.1

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0010777
Physical Location & Seq
Reverse (-)
8104050 .. 8104553
504 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1054900.v1.1.491

Sequence Viewer

Length: 504 bp
ATGAGTAAATCAATTCGAACAACCAGAGCTGGTGAGAGCGCGGCAGGGGCTTGGAAGGTAATGGAGAAAAGCTCAAAGGAAGTTGAAACAAGTTTGGTGGAGAAAGCGGTAGGAAAGAAAGAAGGGTTTGATGAAACTTCTTTCAGGGCTGAGAAAATGCGACCTGAAAGTTTCCACAACATGTCAAAGTTTGCTTCTTTCAATGAATTTTCGGAGGCAGAGAAAGAACATTTTCTCGACAAGGTGGGTATTGAATCGGATGAAGAAACTGAAAACGAAGATGATGGCTTTGACGAAAACTTGATCTGGAAAGACATTAGGGAGATCCCAAAGACAACTCCAAACAATTATGTGTCTGTTTCAGGCAATGTGGGTGATGCAGGGCCAGATGTGGATAAGAAGGCTGATGAGTTCATAGCGAAATTCAGGGGGCAAATTAGGCTTCAGAGAATAGATTTGATCAAGAGATCGAGTGCTCAGATTAGTAAAAACTTATCAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

168

Amino Acids

18.87

Weight (kDa)

5.29

Isoelectric Point (pI)

34.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 129 - 160 2.6e-11 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 41
AciI CCGC 2 cut(s) 41, 107
AclWI GGATC 1 cut(s) 319
AcsI RAATTY 2 cut(s) 206, 422
AcuI CTGAAG 1 cut(s) 428
AflIII ACRYGT 1 cut(s) 180
AgsI TTSAA 3 cut(s) 86, 202, 254
AluBI AGCT 2 cut(s) 29, 72
AluI AGCT 2 cut(s) 29, 72
Alw21I GWGCWC 1 cut(s) 478
AlwI GGATC 1 cut(s) 319
AoxI GGCC 1 cut(s) 383
ApoI RAATTY 2 cut(s) 206, 422
Asp700I GAANNNNTTC 1 cut(s) 231
AspLEI GCGC 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 383
AsuHPI GGTGA 2 cut(s) 44, 386
AsuII TTCGAA 1 cut(s) 16
Bbv12I GWGCWC 1 cut(s) 478
BccI CCATC 1 cut(s) 278
BclI TGATCA 1 cut(s) 459
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 383
BmsI GCATC 1 cut(s) 367
BplI GAGNNNNNCTC 2 cut(s) 56, 88
Bpu14I TTCGAA 1 cut(s) 16
Bse3DI GCAATG 1 cut(s) 373
BseGI GGATG 1 cut(s) 265
BseMI GCAATG 1 cut(s) 373
BseMII CTCAG 2 cut(s) 141, 491
Bsh1236I CGCG 1 cut(s) 41
BshFI GGCC 1 cut(s) 385
BsiHKAI GWGCWC 1 cut(s) 478
BsnI GGCC 1 cut(s) 385
Bsp119I TTCGAA 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 478
Bsp143I GATC 4 cut(s) 303, 324, 459, 467
BspACI CCGC 2 cut(s) 41, 107
BspANI GGCC 1 cut(s) 385
BspCNI CTCAG 2 cut(s) 142, 490
BspFNI CGCG 1 cut(s) 41
BspPI GGATC 1 cut(s) 319
BspT104I TTCGAA 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 373
BssMI GATC 4 cut(s) 303, 324, 459, 467
BstBI TTCGAA 1 cut(s) 16
BstDEI CTNAG 2 cut(s) 150, 477
BstF5I GGATG 1 cut(s) 265
BstFNI CGCG 1 cut(s) 41
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 4 cut(s) 306, 327, 462, 470
BstMBI GATC 4 cut(s) 303, 324, 459, 467
BstMWI GCNNNNNNNGC 2 cut(s) 47, 439
BstNSI RCATGY 1 cut(s) 184
BstUI CGCG 1 cut(s) 41
BstX2I RGATCY 1 cut(s) 324
BstYI RGATCY 1 cut(s) 324
BsuRI GGCC 1 cut(s) 385
BtsCI GGATG 1 cut(s) 265
CfoI GCGC 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 383
CspCI CAANNNNNGTGG 2 cut(s) 78, 113
CviAII CATG 1 cut(s) 181
CviJI RGCY 8 cut(s) 29, 50, 72, 149, 288, 385, 404, 442
CviKI_1 RGCY 8 cut(s) 29, 50, 72, 149, 288, 385, 404, 442
DdeI CTNAG 2 cut(s) 150, 477
DpnI GATC 4 cut(s) 305, 326, 461, 469
DpnII GATC 4 cut(s) 303, 324, 459, 467
Eco57I CTGAAG 1 cut(s) 428
FaeI CATG 1 cut(s) 184
FaiI YATR 3 cut(s) 182, 351, 416
FatI CATG 1 cut(s) 180
FbaI TGATCA 1 cut(s) 459
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 42
GlaI GCGC 1 cut(s) 40
GluI GCNGC 1 cut(s) 42
HaeIII GGCC 1 cut(s) 385
HhaI GCGC 1 cut(s) 41
Hin1II CATG 1 cut(s) 184
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HinfI GANTC 1 cut(s) 254
HphI GGTGA 2 cut(s) 44, 386
Hpy188I TCNGA 4 cut(s) 214, 259, 447, 480
Hpy188III TCNNGA 3 cut(s) 236, 307, 463
HpyAV CCTTC 3 cut(s) 49, 116, 394
HpyCH4V TGCA 1 cut(s) 380
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 439
HpyF3I CTNAG 2 cut(s) 150, 477
Hsp92II CATG 1 cut(s) 184
HspAI GCGC 1 cut(s) 39
Ksp22I TGATCA 1 cut(s) 459
Kzo9I GATC 4 cut(s) 303, 324, 459, 467
LweI GCATC 1 cut(s) 367
MalI GATC 4 cut(s) 305, 326, 461, 469
MboI GATC 4 cut(s) 303, 324, 459, 467
MboII GAAGA 2 cut(s) 275, 290
MflI RGATCY 1 cut(s) 324
MhlI GDGCHC 1 cut(s) 478
MluCI AATT 5 cut(s) 12, 206, 346, 422, 435
MnlI CCTC 1 cut(s) 208
MroXI GAANNNNTTC 1 cut(s) 231
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 2 cut(s) 47, 439
NdeII GATC 4 cut(s) 303, 324, 459, 467
NlaIII CATG 1 cut(s) 184
NspI RCATGY 1 cut(s) 184
NspV TTCGAA 1 cut(s) 16
PciI ACATGT 1 cut(s) 180
PdmI GAANNNNTTC 1 cut(s) 231
PfeI GAWTC 1 cut(s) 254
PkrI GCNGC 1 cut(s) 43
PscI ACATGT 1 cut(s) 180
PspPI GGNCC 1 cut(s) 383
PsuI RGATCY 1 cut(s) 324
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 4 cut(s) 303, 324, 459, 467
Sau96I GGNCC 1 cut(s) 383
SduI GDGCHC 1 cut(s) 478
SetI ASST 6 cut(s) 31, 60, 74, 166, 246, 503
SfaNI GCATC 1 cut(s) 367
SfuI TTCGAA 1 cut(s) 16
Sse9I AATT 5 cut(s) 12, 206, 346, 422, 435
SsiI CCGC 2 cut(s) 41, 107
TaqI TCGA 3 cut(s) 16, 237, 470
TasI AATT 5 cut(s) 12, 206, 346, 422, 435
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 1 cut(s) 254
TspDTI ATGAA 4 cut(s) 147, 219, 276, 403
XapI RAATTY 2 cut(s) 206, 422
XceI RCATGY 1 cut(s) 184
XmnI GAANNNNTTC 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.