Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015861.1

Orthogroup ID

OG0010777

Physical Location & Seq

Genomic Coordinates Reverse (-)

11439 .. 13172

Gene Structure 1734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015861.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1734 bp

atggcagagccagaatcagagtcttacaccaaaccccaaaagttggtctcatcagatcaaaaccatgaaaacccaagtaagttctacaatcattttctctacaaagttgctctagttgtagttttcttcgttattctccctctttttccatcacaagctcctgagttcataaaccaaagtgttgtcaccagaagctgggagcttgttcatctcctcctagttggtatagccgtctcttatggcttatttagcagactaaatgaaaaagtagagaaagaaaacaacacgaaattcgataatgctcattcctatgtgtctagaattcttgaggtgtcctcagtttttgatgatgaggcagaaacctcacctggacctgatgaaaacaaggtccaggcatggagtagtcagtattttaggaatgaacctgtggtggttgtggctcaagaacactctgttcttgatgagcagagagatagcagttcaatacttggtgaaaagccattgcttttgcctgttaggagcctaaaacaacgtgttcctgaccaggacaacatagagtccgttaatgaatctactgttaattctggtggtgctctgagtggctctaattctaggtctggttcaagaaggttttcgagcaaatcgagtaaggctaaagctggtgaaattgggggtctagatcatcaagaattggaggagaaattgaaggagagtgttgtgcttccttctccaattccgtggcgatcaagatcaggaaggttggaagtaaaggaggatcttgttagtagtactccaatggaggaagctgaatttaaccgcctagatcctcggggtgtttcgaggtcccaaagctctcgttcatctcgatccgagtcagtgtcttcatcaccaaagctgtctccttcgacatcacttttgtctccaaagaagttatctcctgcaccttccttgtcatcagaagctcaagccaagagtgttgaggatgtggggaggaagaagagcttttacaagacttctattcccccacctcctccgcccccaccgttgttttataaatcatcatcattgaggccaagcagtgatgaggtttcgtatgagaaggatttgaggagaagcttgactagtgaagcaaagaacttgaatagaagcaatggagaatttatgatgggcagagttaattcaggggttgaaacaaagcataggctgagccatgttgatggcatttcaatgggaaagtctgttagaacaaccagagctggagaacaaggatatgtaaatgggaaggtggagcaaagcgctaaggaagttgaagctaatttggttgagaatgtaacaagaaaaagggtggggttcgatgaatcttcattctggattgagcaattgagccataaaagcagcattcccaacaaccacaagtcatcagcttttcaggaattttccgaggaagatgaaaaggaaaatcttttcgataaggagcttatggaatcggatgaagaaaccgaaagcgaggatgacgacactgaaggaggtttttctcctaaagacattggagagagcccaaagtcaagtccaaggccctatcaacctgtttctgggagtgcaagtgatggagggcctgatgtggataagaaggcagatgaattcatagctaaattcagggagcagattcggcttcagagaatagattcgatcaagaaatcgagtgctcagattagtaaaaacttgtcgaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF761

Protein Analysis

577

Amino Acids

64.1

Weight (kDa)

5.65

Isoelectric Point (pI)

66.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16790
fragaria_vesca	FvH4_5g19610
malus_domestica	MD04G1061300.v1.1 MD06G1054900.v1.1
prunus_persica	Prupe.5G064100_v2.0.a1 Prupe.5G064100_v2.0.a1
pyrus_communis	pycom06g04590 pycom06g04610
rosa_chinensis	RchiOBHm_Chr7g0204301
rosa_laevigata	RLG00000003474
rosa_multiflora	Rmu_sc0002918.1_g000012 Rmu_sc0015861.1_g000002 Rmu_sc0015861.1_g000005
rosa_roxburghii	Rroxscaffold_3G00253240
rosa_rugosa	Rorug07G0081800
rosa_samantha	Rh7AG212500 Rh7BG210500 Rh7CG224500 Rh7DG219300
rosa_wichuraiana	Rw7G018420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1053
AccB7I	CCANNNNNTGG	2 cut(s)	43, 195
AciI	CCGC	2 cut(s)	817, 1034
AclWI	GGATC	3 cut(s)	783, 818, 861
AcsI	RAATTY	7 cut(s)	290, 321, 809, 1157, 1433, 1640, 1652
AcuI	CTGAAG	2 cut(s)	1542, 1658
AfaI	GTAC	1 cut(s)	790
AfeI	AGCGCT	1 cut(s)	1297
AfiI	CCNNNNNNNGG	3 cut(s)	43, 195, 1592
AflIII	ACRYGT	1 cut(s)	532
AgsI	TTSAA	7 cut(s)	483, 624, 706, 1141, 1190, 1227, 1310
AhlI	ACTAGT	1 cut(s)	1121
AjnI	CCWGG	3 cut(s)	367, 390, 543
Alw21I	GWGCWC	2 cut(s)	595, 1708
Alw26I	GTCTC	4 cut(s)	52, 238, 903, 924
AlwI	GGATC	3 cut(s)	783, 818, 861
AlwNI	CAGNNNCTG	1 cut(s)	195
Ama87I	CYCGRG	1 cut(s)	828
Aor51HI	AGCGCT	1 cut(s)	1297
AoxI	GGCC	3 cut(s)	1070, 1574, 1613
ApeKI	GCWGC	1 cut(s)	1395
ApoI	RAATTY	7 cut(s)	290, 321, 809, 1157, 1433, 1640, 1652
ArsI	GACNNNNNNTTYG	2 cut(s)	898, 930
Asp700I	GAANNNNTTC	2 cut(s)	631, 1684
AspLEI	GCGC	1 cut(s)	1298
AspS9I	GGNCC	5 cut(s)	371, 388, 843, 1575, 1613
AsuHPI	GGTGA	5 cut(s)	178, 357, 503, 674, 879
AvaI	CYCGRG	1 cut(s)	828
AvaII	GGWCC	3 cut(s)	371, 388, 843
BanII	GRGCYC	1 cut(s)	1559
BarI	GAAGNNNNNNTAC	2 cut(s)	989, 1021
BbsI	GAAGAC	1 cut(s)	873
Bbv12I	GWGCWC	2 cut(s)	595, 1708
BbvI	GCAGC	1 cut(s)	1407
BccI	CCATC	4 cut(s)	157, 1159, 1211, 1601
BceAI	ACGGC	1 cut(s)	215
BciT130I	CCWGG	3 cut(s)	369, 392, 545
BcoDI	GTCTC	4 cut(s)	52, 238, 903, 924
BcuI	ACTAGT	1 cut(s)	1121
BfaI	CTAG	7 cut(s)	113, 218, 318, 612, 677, 821, 1122
BfoI	RGCGCY	1 cut(s)	1299
BisI	GCNGC	1 cut(s)	1396
BlpI	GCTNAGC	1 cut(s)	1205
BlsI	GCNGC	1 cut(s)	1397
BmcAI	AGTACT	1 cut(s)	790
Bme1390I	CCNGG	3 cut(s)	369, 392, 545
Bme18I	GGWCC	3 cut(s)	371, 388, 843
BmeT110I	CYCGRG	1 cut(s)	828
BmgT120I	GGNCC	5 cut(s)	371, 388, 843, 1575, 1613
BmiI	GGNNCC	2 cut(s)	521, 845
BmrFI	CCNGG	3 cut(s)	369, 392, 545
BpiI	GAAGAC	1 cut(s)	873
BplI	GAGNNNNNCTC	2 cut(s)	320, 352
BpmI	CTGGAG	1 cut(s)	1278
Bpu10I	CCTNAGC	1 cut(s)	1299
Bpu1102I	GCTNAGC	1 cut(s)	1205
BpuEI	CTTGAG	3 cut(s)	347, 426, 948
BsaBI	GATNNNNATC	1 cut(s)	748
BsaI	GGTCTC	1 cut(s)	52
BsaJI	CCNNGG	4 cut(s)	737, 827, 1440, 1571
BsaXI	ACNNNNNCTCC	2 cut(s)	1588, 1618
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 195, 1592
Bse3DI	GCAATG	2 cut(s)	500, 1156
Bse8I	GATNNNNATC	1 cut(s)	748
BseBI	CCWGG	3 cut(s)	369, 392, 545
BseDI	CCNNGG	4 cut(s)	737, 827, 1440, 1571
BseGI	GGATG	3 cut(s)	988, 1495, 1516
BseJI	GATNNNNATC	1 cut(s)	748
BseLI	CCNNNNNNNGG	3 cut(s)	43, 195, 1592
BseMI	GCAATG	2 cut(s)	500, 1156
BseMII	CTCAG	5 cut(s)	153, 351, 587, 1196, 1721
BseRI	GAGGAG	4 cut(s)	203, 710, 1020, 1123
BseXI	GCAGC	1 cut(s)	1407
BseYI	CCCAGC	1 cut(s)	195
BsgI	GTGCAG	1 cut(s)	924
BshFI	GGCC	3 cut(s)	1072, 1576, 1615
BsiHKAI	GWGCWC	2 cut(s)	595, 1708
BsiHKCI	CYCGRG	1 cut(s)	828
BslFI	GGGAC	1 cut(s)	829
BslI	CCNNNNNNNGG	3 cut(s)	43, 195, 1592
BsmAI	GTCTC	4 cut(s)	52, 238, 903, 924
BsmBI	CGTCTC	1 cut(s)	238
BsmFI	GGGAC	1 cut(s)	829
BsmI	GAATGC	1 cut(s)	1398
BsnI	GGCC	3 cut(s)	1072, 1576, 1615
Bso31I	GGTCTC	1 cut(s)	52
BsoBI	CYCGRG	1 cut(s)	828
Bsp1286I	GDGCHC	3 cut(s)	595, 1559, 1708
Bsp143I	GATC	8 cut(s)	55, 679, 743, 749, 775, 823, 866, 1689
Bsp1720I	GCTNAGC	1 cut(s)	1205
BspACI	CCGC	2 cut(s)	817, 1034
BspANI	GGCC	3 cut(s)	1072, 1576, 1615
BspCNI	CTCAG	5 cut(s)	154, 350, 588, 1197, 1720
BspLI	GGNNCC	2 cut(s)	521, 845
BspPI	GGATC	3 cut(s)	783, 818, 861
BspQI	GCTCTTC	1 cut(s)	992
BspTNI	GGTCTC	1 cut(s)	52
BsrDI	GCAATG	2 cut(s)	500, 1156
BssECI	CCNNGG	4 cut(s)	737, 827, 1440, 1571
BssMI	GATC	8 cut(s)	55, 679, 743, 749, 775, 823, 866, 1689
BssT1I	CCWWGG	1 cut(s)	1571
Bst2UI	CCWGG	3 cut(s)	369, 392, 545
Bst4CI	ACNGT	2 cut(s)	577, 1044
Bst6I	CTCTTC	1 cut(s)	992
BstDEI	CTNAG	6 cut(s)	162, 337, 596, 1205, 1299, 1707
BstDSI	CCRYGG	1 cut(s)	737
BstF5I	GGATG	3 cut(s)	988, 1495, 1516
BstH2I	RGCGCY	1 cut(s)	1299
BstHHI	GCGC	1 cut(s)	1298
BstKTI	GATC	8 cut(s)	58, 682, 746, 752, 778, 826, 869, 1692
BstMAI	GTCTC	4 cut(s)	52, 238, 903, 924
BstMBI	GATC	8 cut(s)	55, 679, 743, 749, 775, 823, 866, 1689
BstMWI	GCNNNNNNNGC	3 cut(s)	249, 1392, 1669
BstNI	CCWGG	3 cut(s)	369, 392, 545
BstSCI	CCNGG	3 cut(s)	367, 390, 543
BstV1I	GCAGC	1 cut(s)	1407
BstV2I	GAAGAC	1 cut(s)	873
BstX2I	RGATCY	2 cut(s)	775, 823
BstXI	CCANNNNNNTGG	2 cut(s)	738, 1217
BstYI	RGATCY	2 cut(s)	775, 823
BsuRI	GGCC	3 cut(s)	1072, 1576, 1615
BtgI	CCRYGG	1 cut(s)	737
BtsCI	GGATG	3 cut(s)	988, 1495, 1516
BtsI	GCAGTG	1 cut(s)	1084
BtsIMutI	CAGTG	3 cut(s)	882, 1084, 1518
CaiI	CAGNNNCTG	1 cut(s)	195
CfoI	GCGC	1 cut(s)	1298
Cfr13I	GGNCC	5 cut(s)	371, 388, 843, 1575, 1613
Csp6I	GTAC	1 cut(s)	789
CviAII	CATG	3 cut(s)	65, 396, 1211
CviQI	GTAC	1 cut(s)	789
DdeI	CTNAG	6 cut(s)	162, 337, 596, 1205, 1299, 1707
DpnI	GATC	8 cut(s)	57, 681, 745, 751, 777, 825, 868, 1691
DpnII	GATC	8 cut(s)	55, 679, 743, 749, 775, 823, 866, 1689
Eam1104I	CTCTTC	1 cut(s)	992
EarI	CTCTTC	1 cut(s)	992
EciI	GGCGGA	1 cut(s)	1023
Eco130I	CCWWGG	1 cut(s)	1571
Eco24I	GRGCYC	1 cut(s)	1559
Eco31I	GGTCTC	1 cut(s)	52
Eco47I	GGWCC	3 cut(s)	371, 388, 843
Eco47III	AGCGCT	1 cut(s)	1297
Eco57I	CTGAAG	2 cut(s)	1542, 1658
Eco88I	CYCGRG	1 cut(s)	828
EcoO109I	RGGNCCY	3 cut(s)	843, 1575, 1613
EcoRI	GAATTC	2 cut(s)	321, 1640
EcoRII	CCWGG	3 cut(s)	367, 390, 543
EcoT14I	CCWWGG	1 cut(s)	1571
EcoT38I	GRGCYC	1 cut(s)	1559
ErhI	CCWWGG	1 cut(s)	1571
Esp3I	CGTCTC	1 cut(s)	238
FaeI	CATG	3 cut(s)	68, 399, 1214
FalI	AAGNNNNNCTT	2 cut(s)	986, 1018
FaqI	GGGAC	1 cut(s)	829
FatI	CATG	3 cut(s)	64, 395, 1210
Fnu4HI	GCNGC	1 cut(s)	1396
FokI	GGATG	3 cut(s)	995, 1502, 1523
FriOI	GRGCYC	1 cut(s)	1559
Fsp4HI	GCNGC	1 cut(s)	1396
FspBI	CTAG	7 cut(s)	113, 218, 318, 612, 677, 821, 1122
GlaI	GCGC	1 cut(s)	1297
GluI	GCNGC	1 cut(s)	1396
GsaI	CCCAGC	1 cut(s)	199
GsuI	CTGGAG	1 cut(s)	1278
HaeII	RGCGCY	1 cut(s)	1299
HaeIII	GGCC	3 cut(s)	1072, 1576, 1615
HhaI	GCGC	1 cut(s)	1298
Hin1II	CATG	3 cut(s)	68, 399, 1214
Hin6I	GCGC	1 cut(s)	1296
HinP1I	GCGC	1 cut(s)	1296
HindIII	AAGCTT	1 cut(s)	1114
HinfI	GANTC	9 cut(s)	14, 20, 557, 569, 872, 1358, 1484, 1666, 1685
HphI	GGTGA	5 cut(s)	178, 357, 503, 674, 879
Hpy188I	TCNGA	9 cut(s)	19, 55, 597, 871, 958, 1441, 1489, 1677, 1710
HpyCH4III	ACNGT	2 cut(s)	577, 1044
HpyCH4IV	ACGT	1 cut(s)	532
HpyCH4V	TGCA	2 cut(s)	941, 1601
HpyF10VI	GCNNNNNNNGC	3 cut(s)	249, 1392, 1669
HpyF3I	CTNAG	6 cut(s)	162, 337, 596, 1205, 1299, 1707
HpySE526I	ACGT	1 cut(s)	532
Hsp92II	CATG	3 cut(s)	68, 399, 1214
HspAI	GCGC	1 cut(s)	1296
Kzo9I	GATC	8 cut(s)	55, 679, 743, 749, 775, 823, 866, 1689
LguI	GCTCTTC	1 cut(s)	992
LmnI	GCTCC	6 cut(s)	163, 199, 519, 1288, 1474, 1660
Lsp1109I	GCAGC	1 cut(s)	1407
MaeI	CTAG	7 cut(s)	113, 218, 318, 612, 677, 821, 1122
MaeII	ACGT	1 cut(s)	532
MaeIII	GTNAC	2 cut(s)	184, 1330
MalI	GATC	8 cut(s)	57, 681, 745, 751, 777, 825, 868, 1691
MboI	GATC	8 cut(s)	55, 679, 743, 749, 775, 823, 866, 1689
MboII	GAAGA	7 cut(s)	118, 873, 1006, 1009, 1353, 1457, 1505
MfeI	CAATTG	1 cut(s)	1379
MflI	RGATCY	2 cut(s)	775, 823
MhlI	GDGCHC	3 cut(s)	595, 1559, 1708
MlyI	GAGTC	3 cut(s)	29, 566, 881
MmeI	TCCRAC	1 cut(s)	741
MroXI	GAANNNNTTC	2 cut(s)	631, 1684
MseI	TTAA	4 cut(s)	564, 579, 813, 1176
MslI	CAYNNNNRTG	3 cut(s)	309, 1215, 1226
MspR9I	CCNGG	3 cut(s)	369, 392, 545
MunI	CAATTG	1 cut(s)	1379
Mva1269I	GAATGC	1 cut(s)	1398
MvaI	CCWGG	3 cut(s)	369, 392, 545
MwoI	GCNNNNNNNGC	3 cut(s)	249, 1392, 1669
NdeII	GATC	8 cut(s)	55, 679, 743, 749, 775, 823, 866, 1689
NlaIII	CATG	3 cut(s)	68, 399, 1214
NlaIV	GGNNCC	2 cut(s)	521, 845
NmuCI	GTSAC	1 cut(s)	184
PciSI	GCTCTTC	1 cut(s)	992
PcsI	WCGNNNNNNNCGW	2 cut(s)	641, 862
PctI	GAATGC	1 cut(s)	1398
PdmI	GAANNNNTTC	2 cut(s)	631, 1684
PfeI	GAWTC	6 cut(s)	14, 569, 1358, 1484, 1666, 1685
PflMI	CCANNNNNTGG	2 cut(s)	43, 195
PkrI	GCNGC	1 cut(s)	1397
PleI	GAGTC	3 cut(s)	28, 565, 880
PpsI	GAGTC	3 cut(s)	28, 565, 880
PpuMI	RGGWCCY	1 cut(s)	843
PsiI	TTATAA	1 cut(s)	1053
Psp5II	RGGWCCY	1 cut(s)	843
Psp6I	CCWGG	3 cut(s)	367, 390, 543
PspFI	CCCAGC	1 cut(s)	195
PspGI	CCWGG	3 cut(s)	367, 390, 543
PspN4I	GGNNCC	2 cut(s)	521, 845
PspPI	GGNCC	5 cut(s)	371, 388, 843, 1575, 1613
PspPPI	RGGWCCY	1 cut(s)	843
PstNI	CAGNNNCTG	1 cut(s)	195
PsuI	RGATCY	2 cut(s)	775, 823
RsaI	GTAC	1 cut(s)	790
RsaNI	GTAC	1 cut(s)	789
RseI	CAYNNNNRTG	3 cut(s)	309, 1215, 1226
SapI	GCTCTTC	1 cut(s)	992
SaqAI	TTAA	4 cut(s)	564, 579, 813, 1176
SatI	GCNGC	1 cut(s)	1396
Sau3AI	GATC	8 cut(s)	55, 679, 743, 749, 775, 823, 866, 1689
Sau96I	GGNCC	5 cut(s)	371, 388, 843, 1575, 1613
ScaI	AGTACT	1 cut(s)	790
SchI	GAGTC	3 cut(s)	29, 566, 881
ScrFI	CCNGG	3 cut(s)	369, 392, 545
SduI	GDGCHC	3 cut(s)	595, 1559, 1708
SinI	GGWCC	3 cut(s)	371, 388, 843
SmiMI	CAYNNNNRTG	3 cut(s)	309, 1215, 1226
SmlI	CTYRAG	3 cut(s)	326, 441, 963
SmoI	CTYRAG	3 cut(s)	326, 441, 963
SpeI	ACTAGT	1 cut(s)	1121
SsiI	CCGC	2 cut(s)	817, 1034
SspMI	CTAG	7 cut(s)	113, 218, 318, 612, 677, 821, 1122
StyD4I	CCNGG	3 cut(s)	367, 390, 543
StyI	CCWWGG	1 cut(s)	1571
TaaI	ACNGT	2 cut(s)	577, 1044
TaiI	ACGT	1 cut(s)	535
TatI	WGTACW	1 cut(s)	788
TfiI	GAWTC	6 cut(s)	14, 569, 1358, 1484, 1666, 1685
Tru1I	TTAA	4 cut(s)	564, 579, 813, 1176
Tru9I	TTAA	4 cut(s)	564, 579, 813, 1176
TscAI	CASTG	3 cut(s)	882, 1084, 1525
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	1 cut(s)	1395
Tsp45I	GTSAC	1 cut(s)	184
TspGWI	ACGGA	2 cut(s)	550, 726
TspRI	CASTG	3 cut(s)	882, 1084, 1525
Van91I	CCANNNNNTGG	2 cut(s)	43, 195
VpaK11BI	GGWCC	3 cut(s)	371, 388, 843
XapI	RAATTY	7 cut(s)	290, 321, 809, 1157, 1433, 1640, 1652
XbaI	TCTAGA	2 cut(s)	317, 676
XmnI	GAANNNNTTC	2 cut(s)	631, 1684
XspI	CTAG	7 cut(s)	113, 218, 318, 612, 677, 821, 1122
ZrmI	AGTACT	1 cut(s)	790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.