Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002336

Physical Location & Seq

Genomic Coordinates Reverse (-)

9482429 .. 9483913

Gene Structure 1485 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G16857.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTACATTACATTCTTAATAAAGTCAATACATTCTCCTTCCATAGTTGAATACTTGGTAGATTGGGACTATTTTAGCTTCTGTAATTGCTTCAAATTGGAAAGAGATGCGCGAGAACTCATCCTACGATCATGCTTCAAGCCTGTGGCCTTACCAGGTGGAGAAATCCCTAAGTATTTCACGTATCGAGCTTCTGGAGATTCCCTAACTGTCACTTTACCTCAGAGCTTTCTTTCTCAAGAATTCTTGCGATTTAAGGCTTGTGTCGTGGTTGAACCTCTCTCCAAGGGCAAGGATTTTTATCCATCCTTGAAGGTAAACGTCGGCGGCAAACAGTATGAGGAATCATTTTTTGATGCAGACCTGCAGTTTTGTAAGACGGATCATCTGTTTTTCTGTTCCTTCAAGTTCCAGCCTGAAGACCTTCCATCTAAATTGACTTTCAACGATGTGGAGTTTAAGTTTTGTTGCTCCAATAGGATCAAAGAATGCGGTGTACGACTCTTGTATGTCTCTCAAGAAACAGAGTACAACCAACAGACTACGAGAAGCAAGAAGCGGATGCGGGTATCTTTTGACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009817 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0014070 GO:0019904 GO:0023052 GO:0030275 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_3 LRR_5 NB-ARC TIR

Protein Analysis

194

Amino Acids

22.75

Weight (kDa)

8.02

Isoelectric Point (pI)

47.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C-JID	PF20160	51 - 172	6.9e-16	C-JID domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002336)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16857 AT4G16857 AT4G16860 AT4G16860 AT4G16880 AT4G16890 AT4G16890 AT4G16890 AT4G16890 AT4G16890 AT4G16900 AT4G16900 AT4G16900 AT4G16920 AT4G16920 AT4G16920 AT4G16920 AT4G16920 AT4G16920 AT4G16920 AT4G16920 AT4G16920 AT4G16940 AT4G16940 AT4G16940 AT4G16940 AT4G16940 AT4G16940 AT4G16950 AT4G16950 AT4G16950 AT4G16950 AT4G16950 AT4G16950 AT4G16957 AT4G16960 AT5G51630 AT5G51630 AT5G51630 AT5G51630 AT5G51630 AT5G51630

Species

Orthologous Gene IDs

arabidopsis_thaliana

AT4G16857 AT4G16857 AT4G16860 AT4G16860 AT4G16880 AT4G16890 AT4G16890 AT4G16890 AT4G16890 AT4G16890 AT4G16900 AT4G16900 AT4G16900 AT4G16920 AT4G16920 AT4G16920 AT4G16920 AT4G16920 AT4G16920 AT4G16920 AT4G16920 AT4G16920 AT4G16940 AT4G16940 AT4G16940 AT4G16940 AT4G16940 AT4G16940 AT4G16950 AT4G16950 AT4G16950 AT4G16950 AT4G16950 AT4G16950 AT4G16957 AT4G16960 AT5G51630 AT5G51630 AT5G51630 AT5G51630 AT5G51630 AT5G51630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	372
AccII	CGCG	1 cut(s)	112
AciI	CCGC	4 cut(s)	327, 492, 559, 565
AclWI	GGATC	2 cut(s)	390, 488
AcsI	RAATTY	1 cut(s)	242
AcuI	CTGAAG	1 cut(s)	438
AfaI	GTAC	3 cut(s)	5, 498, 530
AgsI	TTSAA	7 cut(s)	50, 94, 139, 275, 313, 406, 445
AjnI	CCWGG	1 cut(s)	154
AluBI	AGCT	3 cut(s)	78, 191, 228
AluI	AGCT	3 cut(s)	78, 191, 228
Alw26I	GTCTC	1 cut(s)	517
AlwI	GGATC	2 cut(s)	390, 488
AoxI	GGCC	1 cut(s)	147
ApoI	RAATTY	1 cut(s)	242
Asp700I	GAANNNNTTC	1 cut(s)	423
AspLEI	GCGC	1 cut(s)	112
BbsI	GAAGAC	1 cut(s)	426
BccI	CCATC	2 cut(s)	313, 436
BciT130I	CCWGG	1 cut(s)	156
BcoDI	GTCTC	1 cut(s)	517
BfmI	CTRYAG	1 cut(s)	365
BfuAI	ACCTGC	1 cut(s)	372
BisI	GCNGC	1 cut(s)	328
BlsI	GCNGC	1 cut(s)	329
Bme1390I	CCNGG	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	156
BmsI	GCATC	3 cut(s)	97, 346, 552
BpiI	GAAGAC	1 cut(s)	426
BpmI	CTGGAG	1 cut(s)	216
BpuEI	CTTGAG	2 cut(s)	222, 501
BsaAI	YACGTR	1 cut(s)	183
BsaBI	GATNNNNATC	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	285
BsaXI	ACNNNNNCTCC	2 cut(s)	446, 476
Bse8I	GATNNNNATC	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	285
BseGI	GGATG	3 cut(s)	120, 305, 567
BseJI	GATNNNNATC	1 cut(s)	300
BseMII	CTCAG	1 cut(s)	236
Bsh1236I	CGCG	1 cut(s)	112
BshFI	GGCC	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	80
BsmAI	GTCTC	1 cut(s)	517
BsmFI	GGGAC	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	494
BsnI	GGCC	1 cut(s)	149
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	3 cut(s)	128, 382, 480
BspACI	CCGC	4 cut(s)	327, 492, 559, 565
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	235
BspFNI	CGCG	1 cut(s)	112
BspMAI	CTGCAG	1 cut(s)	369
BspMI	ACCTGC	1 cut(s)	372
BspPI	GGATC	2 cut(s)	390, 488
BsrGI	TGTACA	1 cut(s)	3
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	3 cut(s)	128, 382, 480
BssT1I	CCWWGG	1 cut(s)	285
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	2 cut(s)	211, 336
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	183
BstDEI	CTNAG	2 cut(s)	171, 222
BstF5I	GGATG	3 cut(s)	120, 305, 567
BstFNI	CGCG	1 cut(s)	112
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	3 cut(s)	131, 385, 483
BstMAI	GTCTC	1 cut(s)	517
BstMBI	GATC	3 cut(s)	128, 382, 480
BstNI	CCWGG	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	154
BstSFI	CTRYAG	1 cut(s)	365
BstUI	CGCG	1 cut(s)	112
BstV2I	GAAGAC	1 cut(s)	426
BsuRI	GGCC	1 cut(s)	149
BtsCI	GGATG	3 cut(s)	120, 305, 567
BveI	ACCTGC	1 cut(s)	372
CfoI	GCGC	1 cut(s)	112
CsiI	ACCWGGT	1 cut(s)	154
Csp6I	GTAC	3 cut(s)	4, 497, 529
CviAII	CATG	1 cut(s)	132
CviJI	RGCY	7 cut(s)	78, 142, 149, 191, 228, 260, 415
CviKI_1	RGCY	7 cut(s)	78, 142, 149, 191, 228, 260, 415
CviQI	GTAC	3 cut(s)	4, 497, 529
DdeI	CTNAG	2 cut(s)	171, 222
DpnI	GATC	3 cut(s)	130, 384, 482
DpnII	GATC	3 cut(s)	128, 382, 480
Eco130I	CCWWGG	1 cut(s)	285
Eco57I	CTGAAG	1 cut(s)	438
EcoRI	GAATTC	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	1 cut(s)	135
FaiI	YATR	4 cut(s)	44, 133, 339, 510
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	1 cut(s)	131
FauI	CCCGC	1 cut(s)	558
Fnu4HI	GCNGC	1 cut(s)	328
FokI	GGATG	3 cut(s)	107, 292, 574
Fsp4HI	GCNGC	1 cut(s)	328
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	1 cut(s)	328
GsuI	CTGGAG	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	149
HhaI	GCGC	1 cut(s)	112
Hin1II	CATG	1 cut(s)	135
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HinfI	GANTC	3 cut(s)	200, 344, 501
Hpy166II	GTNNAC	2 cut(s)	319, 497
Hpy188I	TCNGA	1 cut(s)	225
Hpy188III	TCNNGA	3 cut(s)	195, 239, 518
Hpy8I	GTNNAC	2 cut(s)	319, 497
Hpy99I	CGWCG	1 cut(s)	326
HpyAV	CCTTC	4 cut(s)	48, 307, 412, 434
HpyCH4III	ACNGT	2 cut(s)	211, 336
HpyCH4IV	ACGT	2 cut(s)	182, 321
HpyCH4V	TGCA	2 cut(s)	359, 367
HpyF3I	CTNAG	2 cut(s)	171, 222
HpySE526I	ACGT	2 cut(s)	182, 321
Hsp92II	CATG	1 cut(s)	135
HspAI	GCGC	1 cut(s)	110
Kzo9I	GATC	3 cut(s)	128, 382, 480
LmnI	GCTCC	1 cut(s)	476
LpnPI	CCDG	7 cut(s)	141, 156, 168, 180, 377, 425, 429
LweI	GCATC	3 cut(s)	97, 346, 552
MabI	ACCWGGT	1 cut(s)	154
MaeII	ACGT	2 cut(s)	182, 321
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	3 cut(s)	130, 384, 482
MboI	GATC	3 cut(s)	128, 382, 480
MboII	GAAGA	1 cut(s)	431
MluCI	AATT	4 cut(s)	85, 95, 242, 434
MlyI	GAGTC	1 cut(s)	495
MnlI	CCTC	3 cut(s)	231, 288, 334
MroXI	GAANNNNTTC	1 cut(s)	423
MseI	TTAA	3 cut(s)	17, 255, 459
MspR9I	CCNGG	1 cut(s)	156
Mva1269I	GAATGC	1 cut(s)	494
MvaI	CCWGG	1 cut(s)	156
MvnI	CGCG	1 cut(s)	112
NdeII	GATC	3 cut(s)	128, 382, 480
NlaIII	CATG	1 cut(s)	135
NmuCI	GTSAC	1 cut(s)	211
PctI	GAATGC	1 cut(s)	494
PdmI	GAANNNNTTC	1 cut(s)	423
PfeI	GAWTC	2 cut(s)	200, 344
PkrI	GCNGC	1 cut(s)	329
PleI	GAGTC	1 cut(s)	495
PpsI	GAGTC	1 cut(s)	495
Ppu21I	YACGTR	1 cut(s)	183
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PsrI	GAACNNNNNNTAC	2 cut(s)	108, 140
PstI	CTGCAG	1 cut(s)	369
RsaI	GTAC	3 cut(s)	5, 498, 530
RsaNI	GTAC	3 cut(s)	4, 497, 529
SaqAI	TTAA	3 cut(s)	17, 255, 459
SatI	GCNGC	1 cut(s)	328
Sau3AI	GATC	3 cut(s)	128, 382, 480
SchI	GAGTC	1 cut(s)	495
ScrFI	CCNGG	1 cut(s)	156
SexAI	ACCWGGT	1 cut(s)	154
SfaNI	GCATC	3 cut(s)	97, 346, 552
SfcI	CTRYAG	1 cut(s)	365
SmlI	CTYRAG	2 cut(s)	237, 516
SmoI	CTYRAG	2 cut(s)	237, 516
Sse9I	AATT	4 cut(s)	85, 95, 242, 434
SsiI	CCGC	4 cut(s)	327, 492, 559, 565
StyD4I	CCNGG	1 cut(s)	154
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	2 cut(s)	211, 336
TaiI	ACGT	2 cut(s)	185, 324
TaqI	TCGA	1 cut(s)	187
TasI	AATT	4 cut(s)	85, 95, 242, 434
TatI	WGTACW	2 cut(s)	3, 528
TauI	GCSGC	1 cut(s)	330
TfiI	GAWTC	2 cut(s)	200, 344
Tru1I	TTAA	3 cut(s)	17, 255, 459
Tru9I	TTAA	3 cut(s)	17, 255, 459
TseFI	GTSAC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	211
TspGWI	ACGGA	1 cut(s)	395
XapI	RAATTY	1 cut(s)	242
XmnI	GAANNNNTTC	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.